F291287

General Info

Members Datasets Scaffolds Average Seq Length
189 144 378 421

Family's Representative Sequence

Representative Sequence 3300039438|Ga0436360_0569241|Ga0436360_0569241_336_1748
Length 470
Sequence MAAGARDQPIRRKEKGFINLQHNLWMPALYPMSDAIISVENLCKKYLVGHNSGIRSRSNYIALRDVIGNEIRNIVHKTIDMIRGKQIIYGDEIEEVWALREVSFEVKQGEVLGIIGWNGAGKSTLLKILSRVTEPTCGRVALRGRVASLLEVGTGFHPELSGRENIFLNGAILNMTRAEIKRKFDEIVAFAEVERFLDTPVKRYSPGMYMRLAFAVAAHLEPEILIIDEVLAVGDFEFQKKCLGKMSEVARENRTVLFVSHNMAAVKALTSKSILLDRGGVVAWGDTEGVIATYLTRVSNNGGGSGPRDLQGFRRQRHYVPGAKIVAIRISREQGNGEDEVQIELGERFTIEIHLVVDIPMNAADCCVYVKSSLGEVVSCLWCSDITSGLSLEPGYQVIRMSAQNLLPTPGRYVVEIHLDPVIGDDPCDVIDDYPLFTVVNTGQICRELDRRWGTIFCNAVEWEVIKSKP

Samples

Sample ID Description Type Environment
1 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
55 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
56 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
57 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
58 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
60 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
86 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
87 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
88 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
89 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
90 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
91 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
99 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
100 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
105 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
106 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
107 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
108 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
109 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
110 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
111 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
112 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
113 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
114 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
115 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
116 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
117 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
118 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
119 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
120 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
121 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
122 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
123 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
124 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
125 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
126 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
127 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
128 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
129 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
130 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
131 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
132 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
133 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
138 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
139 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
140 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
141 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
142 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
143 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
144 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.94
Metatranscriptomes 0.53
Isolates 0.53

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.76
Nodule 0
Rhizoplane 6.88
Rhizosphere 85.19
Stem 0
Stem Tuber 0
Unclassified 4.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436360_0569241 3300039438 Bacteria 1923
2 JGI25152J39213_1000481 3300002773 Bacteria 22817
3 JGI25150J39212_1000175 3300002774 Bacteria 35998
4 JGI25151J46595_10000518 3300003187 Bacteria 35998
5 Ga0070658_10155630 3300005327 Bacteria 1916
6 Ga0070683_100043453 3300005329 Bacteria 4141
7 Ga0070670_100026849 3300005331 Bacteria 4953
8 Ga0070670_100039734 3300005331 Bacteria 4045
9 Ga0070677_10036987 3300005333 Bacteria 1902
10 Ga0070675_100000180 3300005354 Bacteria 39447
11 Ga0070675_100044399 3300005354 Bacteria 3635
12 Ga0070671_100000162 3300005355 Bacteria 43917
13 Ga0070674_100000056 3300005356 Bacteria 49642
14 Ga0070674_100035323 3300005356 Bacteria 3347
15 Ga0070673_100000570 3300005364 Bacteria 19934
16 Ga0070673_100056142 3300005364 Bacteria 3106
17 Ga0070688_100015613 3300005365 Bacteria 4326
18 Ga0070678_100010571 3300005456 Bacteria 5646
19 Ga0070678_100042392 3300005456 Bacteria 3234
20 Ga0068867_100039637 3300005459 Bacteria 3435
21 Ga0070706_100071849 3300005467 Bacteria 3201
22 Ga0070707_100021657 3300005468 Bacteria 6077
23 Ga0070699_100005838 3300005518 Bacteria 10758
24 Ga0070679_100008251 3300005530 Bacteria 9798
25 Ga0070679_100141980 3300005530 Unclassified 2380
26 Ga0070684_100077808 3300005535 Bacteria 2930
27 Ga0068853_100171720 3300005539 Bacteria 1962
28 Ga0070672_100011454 3300005543 Bacteria 6185
29 Ga0070665_100000130 3300005548 Bacteria 141805
30 Ga0068855_100142250 3300005563 Bacteria 2733
31 Ga0070664_100272461 3300005564 Bacteria 1525
32 Ga0068854_100000095 3300005578 Bacteria 61892
33 Ga0068854_100007370 3300005578 Bacteria 7031
34 Ga0068859_100002909 3300005617 Bacteria 17388
35 Ga0068864_100005155 3300005618 Bacteria 10702
36 Ga0068851_10000129 3300005834 Bacteria 40634
37 Ga0068858_100217001 3300005842 Unclassified 1811
38 Ga0068862_100033922 3300005844 Bacteria 4318
39 Ga0097621_100000467 3300006237 Bacteria 28329
40 Ga0097621_100016576 3300006237 Bacteria 5575
41 Ga0068871_100008829 3300006358 Bacteria 7261
42 Ga0075431_100028171 3300006847 Bacteria 5768
43 Ga0097620_100002909 3300006931 Bacteria 17388
44 Ga0105240_10004538 3300009093 Bacteria 21093
45 Ga0111539_10007100 3300009094 Bacteria 14354
46 Ga0114129_10001829 3300009147 Bacteria 28960
47 Ga0105243_10112253 3300009148 Bacteria 2283
48 Ga0105248_10000979 3300009177 Bacteria 31690
49 Ga0105237_10072198 3300009545 Bacteria 3445
50 Ga0105238_10000011 3300009551 Bacteria 261080
51 Ga0105238_10011208 3300009551 Bacteria 9018
52 Ga0105238_10223931 3300009551 Bacteria 1858
53 Ga0105249_10000203 3300009553 Bacteria 67783
54 Ga0105249_10198261 3300009553 Bacteria 1963
55 Ga0105239_10213736 3300010375 Bacteria 2162
56 Ga0157371_10091410 3300013102 Bacteria 2156
57 Ga0157374_10044699 3300013296 Bacteria 4094
58 Ga0157378_10006476 3300013297 Bacteria 10241
59 Ga0157378_10106556 3300013297 Bacteria 2564
60 Ga0163162_10008529 3300013306 Bacteria 9991
61 Ga0163162_10062394 3300013306 Bacteria 3767
62 Ga0163162_10128741 3300013306 Bacteria 2639
63 Ga0157372_10000112 3300013307 Bacteria 85902
64 Ga0163163_10124423 3300014325 Bacteria 2615
65 Ga0157380_10007620 3300014326 Bacteria 7693
66 Ga0163161_10000357 3300017792 Bacteria 38514
67 Ga0163161_10083840 3300017792 Bacteria 2350
68 Ga0206353_10931809 3300020082 Bacteria 6699
69 Ga0213872_10016255 3300021361 Unclassified 3455
70 Ga0213871_10016213 3300021441 Unclassified 1792
71 Ga0207425_1000300 3300025245 Bacteria 36053
72 Ga0209129_1000588 3300025258 Bacteria 24948
73 Ga0209025_1000992 3300025294 Bacteria 42037
74 Ga0209758_1000860 3300025297 Bacteria 42010
75 Ga0207656_10000178 3300025321 Bacteria 22900
76 Ga0207656_10072424 3300025321 Bacteria 1534
77 Ga0207682_10007690 3300025893 Bacteria 4288
78 Ga0207705_10109364 3300025909 Bacteria 2041
79 Ga0207684_10041868 3300025910 Bacteria 3882
80 Ga0207695_10010414 3300025913 Bacteria 11376
81 Ga0207652_10022198 3300025921 Bacteria 5247
82 Ga0207652_10115902 3300025921 Unclassified 2380
83 Ga0207646_10006280 3300025922 Bacteria 12326
84 Ga0207646_10021970 3300025922 Bacteria 5886
85 Ga0207694_10000004 3300025924 Bacteria 967075
86 Ga0207650_10054631 3300025925 Bacteria 2963
87 Ga0207650_10074715 3300025925 Bacteria 2556
88 Ga0207650_10120534 3300025925 Bacteria 2042
89 Ga0207650_10189096 3300025925 Bacteria 1644
90 Ga0207659_10005006 3300025926 Bacteria 8031
91 Ga0207659_10047588 3300025926 Bacteria 3034
92 Ga0207644_10000195 3300025931 Bacteria 43384
93 Ga0207644_10019532 3300025931 Bacteria 4598
94 Ga0207670_10149809 3300025936 Bacteria 1730
95 Ga0207691_10023179 3300025940 Bacteria 5847
96 Ga0207691_10031498 3300025940 Bacteria 4948
97 Ga0207691_10040180 3300025940 Bacteria 4323
98 Ga0207711_10002105 3300025941 Bacteria 17979
99 Ga0207661_10002655 3300025944 Bacteria 12301
100 Ga0207661_10079746 3300025944 Bacteria 2699
101 Ga0207651_10003018 3300025960 Bacteria 8156
102 Ga0207651_10035885 3300025960 Bacteria 3230
103 Ga0207712_10000007 3300025961 Bacteria 539589
104 Ga0207640_10000038 3300025981 Bacteria 108630
105 Ga0207703_10091332 3300026035 Unclassified 2561
106 Ga0207641_10084926 3300026088 Bacteria 2757
107 Ga0207648_10011740 3300026089 Bacteria 8238
108 Ga0207648_10083226 3300026089 Bacteria 2791
109 Ga0207676_10013361 3300026095 Bacteria 5898
110 Ga0207676_10259920 3300026095 Bacteria 1567
111 Ga0207683_10020541 3300026121 Bacteria 5650
112 Ga0268266_10000136 3300028379 Bacteria 141853
113 Ga0268265_10257820 3300028380 Bacteria 1548
114 Ga0265338_10068435 3300028800 Bacteria 3059
115 Ga0265320_10056353 3300031240 Bacteria 1889
116 Ga0265327_10000735 3300031251 Bacteria 51211
117 Ga0265327_10000897 3300031251 Bacteria 43913
118 Ga0265316_10027789 3300031344 Bacteria 4677
119 Ga0265313_10004709 3300031595 Bacteria 10297
120 Ga0265313_10040084 3300031595 Bacteria 2318
121 Ga0307508_10000031 3300031616 Bacteria 163301
122 Ga0265342_10005430 3300031712 Bacteria 9722
123 Ga0373937_0031664 3300036401 Bacteria 4794
124 Ga0395900_0057726 3300037418 Bacteria 3996
125 Ga0395898_0180651 3300037466 Bacteria 2017
126 Ga0395905_0077556 3300037471 Bacteria 3113
127 Ga0436364_0931406 3300037853 Bacteria 3678
128 Ga0395901_0159903 3300038443 Bacteria 2366
129 Ga0436360_0541470 3300039438 Unclassified 1791
130 Ga0436361_0252506 3300039447 Bacteria 13984
131 Ga0436362_1101458 3300039453 Unclassified 2625
132 Ga0439457_001038 3300042014 Bacteria 8384
133 Ga0451577_0002019 3300042876 Bacteria 25179
134 Ga0451577_0005739 3300042876 Bacteria 12587
135 Ga0451577_0033719 3300042876 Bacteria 4617
136 Ga0451577_0200805 3300042876 Bacteria 1800
137 Ga0466972_0090913 3300044658 Bacteria 1448
138 Ga0453684_0000910 3300044712 Bacteria 98445
139 Ga0453684_0001983 3300044712 Bacteria 52484
140 Ga0453684_0017886 3300044712 Bacteria 10939
141 Ga0453684_0018002 3300044712 Bacteria 10879
142 Ga0453684_0105826 3300044712 Bacteria 3430
143 Ga0453684_0526110 3300044712 Bacteria 1306
144 Ga0466957_0001603 3300044842 Bacteria 11875
145 Ga0466957_0141535 3300044842 Bacteria 1550
146 Ga0451576_0095709 3300045051 Bacteria 3088
147 Ga0495603_0001023 3300046455 Bacteria 16137
148 Ga0495629_0000381 3300046459 Bacteria 37177
149 Ga0495651_0100144 3300046462 Bacteria 2159
150 Ga0495662_0000019 3300046476 Bacteria 55148
151 Ga0495664_0018190 3300046477 Bacteria 4022
152 Ga0495608_0002991 3300046511 Bacteria 12075
153 Ga0495640_0005664 3300046533 Bacteria 9936
154 Ga0495587_0016361 3300046536 Bacteria 4615
155 Ga0495645_0084009 3300046543 Bacteria 2281
156 Ga0495634_0002033 3300046642 Bacteria 17181
157 Ga0495634_0067072 3300046642 Bacteria 2374
158 Ga0495635_0000044 3300046663 Bacteria 83945
159 Ga0495647_0000139 3300046681 Bacteria 18418
160 Ga0495647_0003629 3300046681 Bacteria 4955
161 Ga0495649_0003897 3300046694 Bacteria 9870
162 Ga0495674_0000059 3300047319 Bacteria 73353
163 Ga0495674_0004213 3300047319 Bacteria 13849
164 Ga0495680_0001082 3300047322 Bacteria 30201
165 Ga0495593_0037124 3300047673 Bacteria 2638
166 Ga0496100_0000002 3300048903 Bacteria 489057
167 Ga0496101_0000001 3300048904 Bacteria 489057
168 Ga0496102_0008791 3300048905 Bacteria 8662
169 Ga0496103_0020050 3300048906 Bacteria 4015
170 Ga0496105_0102809 3300048908 Bacteria 2360
171 Ga0496106_0000110 3300048909 Bacteria 63946
172 Ga0496107_0000003 3300048910 Bacteria 304038
173 Ga0496109_0057315 3300048912 Bacteria 3556
174 Ga0496110_0074992 3300048913 Bacteria 3005
175 Ga0496110_0122066 3300048913 Bacteria 2348
176 Ga0496111_0066602 3300048914 Bacteria 2616
177 Ga0496112_0075076 3300048915 Bacteria 3343
178 Ga0496114_0001129 3300048917 Bacteria 20185
179 Ga0496117_0001757 3300048920 Bacteria 29817
180 Ga0496118_0000550 3300048921 Bacteria 61734
181 Ga0496124_0025604 3300048927 Bacteria 5342
182 nmdc:mga05p37_1658_c1 3300050507 Bacteria 25851
183 nmdc:mga06r32_269233_c1 3300050510 Bacteria 1691
184 nmdc:mga08y16_8585_c1 3300050511 Bacteria 10705
185 Ga0495612_0007378 3300053078 Bacteria 4494
186 Ga0495595_0000053 3300053084 Bacteria 59851
187 Ga0500641_0002423 3300053096 Bacteria 6618
188 Ga0500650_0058492 3300053098 Bacteria 1798
189 2919051294 2919046199 Bacteria 5567169
190 Ga0436360_0569241
191 JGI25152J39213_1000481
192 JGI25150J39212_1000175
193 JGI25151J46595_10000518
194 Ga0070658_10155630
195 Ga0070683_100043453
196 Ga0070670_100026849
197 Ga0070670_100039734
198 Ga0070677_10036987
199 Ga0070675_100000180
200 Ga0070675_100044399
201 Ga0070671_100000162
202 Ga0070674_100000056
203 Ga0070674_100035323
204 Ga0070673_100000570
205 Ga0070673_100056142
206 Ga0070688_100015613
207 Ga0070678_100010571
208 Ga0070678_100042392
209 Ga0068867_100039637
210 Ga0070706_100071849
211 Ga0070707_100021657
212 Ga0070699_100005838
213 Ga0070679_100008251
214 Ga0070679_100141980
215 Ga0070684_100077808
216 Ga0068853_100171720
217 Ga0070672_100011454
218 Ga0070665_100000130
219 Ga0068855_100142250
220 Ga0070664_100272461
221 Ga0068854_100000095
222 Ga0068854_100007370
223 Ga0068859_100002909
224 Ga0068864_100005155
225 Ga0068851_10000129
226 Ga0068858_100217001
227 Ga0068862_100033922
228 Ga0097621_100000467
229 Ga0097621_100016576
230 Ga0068871_100008829
231 Ga0075431_100028171
232 Ga0097620_100002909
233 Ga0105240_10004538
234 Ga0111539_10007100
235 Ga0114129_10001829
236 Ga0105243_10112253
237 Ga0105248_10000979
238 Ga0105237_10072198
239 Ga0105238_10000011
240 Ga0105238_10011208
241 Ga0105238_10223931
242 Ga0105249_10000203
243 Ga0105249_10198261
244 Ga0105239_10213736
245 Ga0157371_10091410
246 Ga0157374_10044699
247 Ga0157378_10006476
248 Ga0157378_10106556
249 Ga0163162_10008529
250 Ga0163162_10062394
251 Ga0163162_10128741
252 Ga0157372_10000112
253 Ga0163163_10124423
254 Ga0157380_10007620
255 Ga0163161_10000357
256 Ga0163161_10083840
257 Ga0206353_10931809
258 Ga0213872_10016255
259 Ga0213871_10016213
260 Ga0207425_1000300
261 Ga0209129_1000588
262 Ga0209025_1000992
263 Ga0209758_1000860
264 Ga0207656_10000178
265 Ga0207656_10072424
266 Ga0207682_10007690
267 Ga0207705_10109364
268 Ga0207684_10041868
269 Ga0207695_10010414
270 Ga0207652_10022198
271 Ga0207652_10115902
272 Ga0207646_10006280
273 Ga0207646_10021970
274 Ga0207694_10000004
275 Ga0207650_10054631
276 Ga0207650_10074715
277 Ga0207650_10120534
278 Ga0207650_10189096
279 Ga0207659_10005006
280 Ga0207659_10047588
281 Ga0207644_10000195
282 Ga0207644_10019532
283 Ga0207670_10149809
284 Ga0207691_10023179
285 Ga0207691_10031498
286 Ga0207691_10040180
287 Ga0207711_10002105
288 Ga0207661_10002655
289 Ga0207661_10079746
290 Ga0207651_10003018
291 Ga0207651_10035885
292 Ga0207712_10000007
293 Ga0207640_10000038
294 Ga0207703_10091332
295 Ga0207641_10084926
296 Ga0207648_10011740
297 Ga0207648_10083226
298 Ga0207676_10013361
299 Ga0207676_10259920
300 Ga0207683_10020541
301 Ga0268266_10000136
302 Ga0268265_10257820
303 Ga0265338_10068435
304 Ga0265320_10056353
305 Ga0265327_10000735
306 Ga0265327_10000897
307 Ga0265316_10027789
308 Ga0265313_10004709
309 Ga0265313_10040084
310 Ga0307508_10000031
311 Ga0265342_10005430
312 Ga0373937_0031664
313 Ga0395900_0057726
314 Ga0395898_0180651
315 Ga0395905_0077556
316 Ga0436364_0931406
317 Ga0395901_0159903
318 Ga0436360_0541470
319 Ga0436361_0252506
320 Ga0436362_1101458
321 Ga0439457_001038
322 Ga0451577_0002019
323 Ga0451577_0005739
324 Ga0451577_0033719
325 Ga0451577_0200805
326 Ga0466972_0090913
327 Ga0453684_0000910
328 Ga0453684_0001983
329 Ga0453684_0017886
330 Ga0453684_0018002
331 Ga0453684_0105826
332 Ga0453684_0526110
333 Ga0466957_0001603
334 Ga0466957_0141535
335 Ga0451576_0095709
336 Ga0495603_0001023
337 Ga0495629_0000381
338 Ga0495651_0100144
339 Ga0495662_0000019
340 Ga0495664_0018190
341 Ga0495608_0002991
342 Ga0495640_0005664
343 Ga0495587_0016361
344 Ga0495645_0084009
345 Ga0495634_0002033
346 Ga0495634_0067072
347 Ga0495635_0000044
348 Ga0495647_0000139
349 Ga0495647_0003629
350 Ga0495649_0003897
351 Ga0495674_0000059
352 Ga0495674_0004213
353 Ga0495680_0001082
354 Ga0495593_0037124
355 Ga0496100_0000002
356 Ga0496101_0000001
357 Ga0496102_0008791
358 Ga0496103_0020050
359 Ga0496105_0102809
360 Ga0496106_0000110
361 Ga0496107_0000003
362 Ga0496109_0057315
363 Ga0496110_0074992
364 Ga0496110_0122066
365 Ga0496111_0066602
366 Ga0496112_0075076
367 Ga0496114_0001129
368 Ga0496117_0001757
369 Ga0496118_0000550
370 Ga0496124_0025604
371 nmdc:mga05p37_1658_c1
372 nmdc:mga06r32_269233_c1
373 nmdc:mga08y16_8585_c1
374 Ga0495612_0007378
375 Ga0495595_0000053
376 Ga0500641_0002423
377 Ga0500650_0058492
378 2919051294

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

99

232

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dd0-assembly1.cif.gz_C crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.8775 1 257
7dd0-assembly2.cif.gz_D crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.8654 1 250
7dd0-assembly1.cif.gz_A crystal structure of the n-terminal domain of tagh from bacillus subtilis 0.8525 1 263
6an5-assembly1.cif.gz_A crystal structure of the nucelotide binding domain of an o-antigen polysaccharide abc-transporter 0.843 49 249
6m96-assembly1.cif.gz_A-2 atp-bound conformation of the wzmwzt o antigen abc transporter 0.8421 4 248
ID Description Score Start End Superfamily
af_P72047_42_272_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8778 50 253 3.40.50.300
af_Q2G2L1_4_262_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8492 4 263 3.40.50.300
af_Q58429_1_224_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8398 1 241 3.40.50.300
af_A0A1D6DXP2_296_452_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8369 97 213 3.40.50.300
af_O53164_299_541_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8327 3 238 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A6P0J235-F1-model_v4 ABC transporter ATP-binding protein 0.9202 50 253 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A6N7ZGK5-F1-model_v4 ATP-binding cassette domain-containing protein 0.8979 1 249 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A7G4RK67-F1-model_v4 ABC transporter domain-containing protein 0.8956 5 258 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A6N7ZGK5-F1-model_v4 ATP-binding cassette domain-containing protein 0.8908 1 249 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A6P0J235-F1-model_v4 ABC transporter ATP-binding protein 0.8797 50 253 GO:0005524
GO:0016020
GO:0016887
GO:0140359

Map