F291358

General Info

Members Datasets Scaffolds Average Seq Length
189 149 378 454

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0066953|Ga0451576_0066953_2272_3627
Length 434
Sequence MQLSFMGAAGTVTGSKYLLEHEGKRVLVDCGLFQGLKQLRLRNWDAFPLPAREIDAVVLTHAHIDHSGYLPALARQGFRGPVFCTEATRDLDALLLPDAGHLQEEDAFYANKHGFSRHAPALPLYTEEDGRRVLKQFQPRPFGEGFEAIPGVTVRFSRAGHILGAASVHVAWDGHSLLFSGDLGRDVIESTYGDRLHEPEDVRTLLAETVNRTAARGGIVVVPAFAVGRAQTLLYLLAQLKDARRIPDIPVFLNSPMAADVTQIYHRHAGEHRLDPQQCQRMCQSARVINTVEESRRLNDLRFPAVIVSASGMATGGRVVHHLKAFAPDRRNTILLAGYQAAGTRGAALAAGAKEIKIHGDHVPVRAEVVSLGSLSAHADRGELLRWIGKLPRAPRQVFVTHGEPVAADSLRQAIEEEYRWPCTVPEHRQAIAL

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
8 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
9 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
39 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
42 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
43 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
45 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
71 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
72 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
73 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
74 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
79 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
80 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
81 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
82 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
83 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
84 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
85 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
90 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
91 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
92 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
99 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
100 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
101 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
102 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
103 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
104 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
105 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
106 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
107 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
108 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
109 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
110 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
111 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
112 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
115 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
116 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
117 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
118 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
119 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
120 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
121 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
122 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
123 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
124 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
125 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
126 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
127 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
128 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
133 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
134 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
135 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
136 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
137 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
138 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
139 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
140 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
141 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
142 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
143 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
144 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
145 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
146 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
147 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
148 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
149 2904456579 Variovorax sp. 2002 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.35
Metatranscriptomes 0.53
Isolates 2.12

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.87
Nodule 0.53
Rhizoplane 1.59
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0066953 3300045051 Bacteria 3738
2 JGI24739J22299_10017456 3300001989 Bacteria 2589
3 JGI25156J39149_1000121 3300002705 Bacteria 56667
4 JGI25157J39369_1000015 3300002741 Bacteria 194042
5 rootH1_10047439 3300003316 Bacteria 2312
6 Ga0006562J51391_1025907 3300003578 Bacteria 5330
7 Ga0055535_1000123 3300003761 Bacteria 83521
8 Ga0055529_1000159 3300003763 Bacteria 93013
9 Ga0055540_1001891 3300003792 Bacteria 11731
10 Ga0070658_10047061 3300005327 Bacteria 3490
11 Ga0070658_10062305 3300005327 Bacteria 3039
12 Ga0068869_100024390 3300005334 Bacteria 4190
13 Ga0070660_100030978 3300005339 Bacteria 4015
14 Ga0070660_100217419 3300005339 Bacteria 1553
15 Ga0070671_100023455 3300005355 Bacteria 5049
16 Ga0070671_100080547 3300005355 Bacteria 2723
17 Ga0070667_100000623 3300005367 Bacteria 34501
18 Ga0070708_100137162 3300005445 Bacteria 2267
19 Ga0068867_100000006 3300005459 Bacteria 152530
20 Ga0070706_100235408 3300005467 Bacteria 1710
21 Ga0070679_100121096 3300005530 Bacteria 2601
22 Ga0070684_100055424 3300005535 Bacteria 3456
23 Ga0068855_100002212 3300005563 Bacteria 24064
24 Ga0068855_100032159 3300005563 Bacteria 6264
25 Ga0068857_100001302 3300005577 Bacteria 19609
26 Ga0068857_100054051 3300005577 Bacteria 3562
27 Ga0068856_100000748 3300005614 Bacteria 35225
28 Ga0068864_100116393 3300005618 Bacteria 2385
29 Ga0075362_10000908 3300006177 Bacteria 8973
30 Ga0075362_10008199 3300006177 Bacteria 3987
31 Ga0075367_10078734 3300006178 Bacteria 1991
32 Ga0075369_10006601 3300006186 Bacteria 4393
33 Ga0075366_10002517 3300006195 Bacteria 9411
34 Ga0075370_10000129 3300006353 Bacteria 25189
35 Ga0075370_10032184 3300006353 Bacteria 2930
36 Ga0068865_100092217 3300006881 Bacteria 2200
37 Ga0099826_10028244 3300006948 Bacteria 4108
38 Ga0105240_10005729 3300009093 Bacteria 18432
39 Ga0105240_10025246 3300009093 Bacteria 7813
40 Ga0105240_10130438 3300009093 Bacteria 3016
41 Ga0105245_10073383 3300009098 Bacteria 3111
42 Ga0114129_10132165 3300009147 Bacteria 3427
43 Ga0105243_10002248 3300009148 Bacteria 16227
44 Ga0105248_10005577 3300009177 Bacteria 13833
45 Ga0105237_10003967 3300009545 Bacteria 17311
46 Ga0105237_10017836 3300009545 Bacteria 7359
47 Ga0105237_10090093 3300009545 Bacteria 3057
48 Ga0105239_10001665 3300010375 Bacteria 29281
49 Ga0105239_10006450 3300010375 Bacteria 13609
50 Ga0105239_10082908 3300010375 Bacteria 3531
51 Ga0157377_10000013 3300014745 Bacteria 267125
52 Ga0209672_102609 3300025228 Bacteria 4269
53 Ga0209258_100060 3300025242 Bacteria 319881
54 Ga0209646_1000177 3300025246 Bacteria 81778
55 Ga0209026_1000021 3300025250 Bacteria 375165
56 Ga0209677_100168 3300025253 Bacteria 56142
57 Ga0209759_1000025 3300025256 Bacteria 317082
58 Ga0209759_1000282 3300025256 Bacteria 71259
59 Ga0209759_1001883 3300025256 Bacteria 10392
60 Ga0209455_1000136 3300025272 Bacteria 146375
61 Ga0209673_1014766 3300025273 Bacteria 3007
62 Ga0209676_1011908 3300025292 Bacteria 3463
63 Ga0209051_1000144 3300025303 Bacteria 134811
64 Ga0209051_1016704 3300025303 Bacteria 3305
65 Ga0207705_10031313 3300025909 Bacteria 3796
66 Ga0207695_10004148 3300025913 Bacteria 19891
67 Ga0207695_10006608 3300025913 Bacteria 14981
68 Ga0207671_10003147 3300025914 Bacteria 16737
69 Ga0207671_10051206 3300025914 Bacteria 3059
70 Ga0207657_10001557 3300025919 Bacteria 24609
71 Ga0207657_10228045 3300025919 Bacteria 1490
72 Ga0207652_10055316 3300025921 Bacteria 3412
73 Ga0207681_10170335 3300025923 Bacteria 1650
74 Ga0207694_10009065 3300025924 Bacteria 7508
75 Ga0207687_10093258 3300025927 Bacteria 2201
76 Ga0207644_10053103 3300025931 Bacteria 2916
77 Ga0207706_10008759 3300025933 Bacteria 9313
78 Ga0207709_10002108 3300025935 Bacteria 12806
79 Ga0207711_10056924 3300025941 Bacteria 3360
80 Ga0207689_10057062 3300025942 Bacteria 3212
81 Ga0207667_10009670 3300025949 Bacteria 11341
82 Ga0207667_10015178 3300025949 Bacteria 8758
83 Ga0207658_10002534 3300025986 Bacteria 13295
84 Ga0207702_10001631 3300026078 Bacteria 22179
85 Ga0207641_10047999 3300026088 Bacteria 3603
86 Ga0207648_10000006 3300026089 Bacteria 223855
87 Ga0207674_10002128 3300026116 Bacteria 25034
88 Ga0207674_10012254 3300026116 Bacteria 9589
89 Ga0209974_10019076 3300027876 Bacteria 2274
90 Ga0268266_10034756 3300028379 Bacteria 4287
91 Ga0268266_10215893 3300028379 Bacteria 1761
92 Ga0265336_10000048 3300028666 Bacteria 121572
93 Ga0307515_10001417 3300028794 Bacteria 54238
94 Ga0307515_10012222 3300028794 Bacteria 16171
95 Ga0307515_10065324 3300028794 Bacteria 5067
96 Ga0307515_10116285 3300028794 Bacteria 3071
97 Ga0265324_10000929 3300029957 Bacteria 18414
98 Ga0307512_10033274 3300030522 Bacteria 4434
99 Ga0265328_10012560 3300031239 Bacteria 3369
100 Ga0265327_10001420 3300031251 Bacteria 30486
101 Ga0307509_10001185 3300031507 Bacteria 44376
102 Ga0307509_10043359 3300031507 Bacteria 4868
103 Ga0307509_10069127 3300031507 Bacteria 3693
104 Ga0307408_100068478 3300031548 Bacteria 2614
105 Ga0307508_10000041 3300031616 Bacteria 147868
106 Ga0307508_10000082 3300031616 Bacteria 111720
107 Ga0307508_10016992 3300031616 Bacteria 6618
108 Ga0307508_10030114 3300031616 Bacteria 4904
109 Ga0307514_10005419 3300031649 Bacteria 11401
110 Ga0307516_10001084 3300031730 Bacteria 37862
111 Ga0307405_10011162 3300031731 Bacteria 4691
112 Ga0307413_10009223 3300031824 Bacteria 4713
113 Ga0307410_10125023 3300031852 Bacteria 1881
114 Ga0307406_10000565 3300031901 Bacteria 21318
115 Ga0307407_10022079 3300031903 Bacteria 3295
116 Ga0307412_10015881 3300031911 Bacteria 4472
117 Ga0307409_100100801 3300031995 Bacteria 2394
118 Ga0307416_100031040 3300032002 Bacteria 4018
119 Ga0307416_100092280 3300032002 Bacteria 2604
120 Ga0307411_10028252 3300032005 Bacteria 3408
121 Ga0307411_10052552 3300032005 Bacteria 2664
122 Ga0307507_10022173 3300033179 Bacteria 7033
123 Ga0307507_10075370 3300033179 Bacteria 3018
124 Ga0307510_10000881 3300033180 Bacteria 31584
125 Ga0373925_0029043 3300037068 Bacteria 4056
126 Ga0395899_0153323 3300037312 Bacteria 1632
127 Ga0395900_0004033 3300037418 Bacteria 15670
128 Ga0395898_0025833 3300037466 Bacteria 5913
129 Ga0395905_0027700 3300037471 Bacteria 5343
130 Ga0395901_0067542 3300038443 Bacteria 3723
131 Ga0395901_0150372 3300038443 Bacteria 2447
132 Ga0439436_0000104 3300041404 Bacteria 20033
133 Ga0439466_0003549 3300041411 Bacteria 6030
134 Ga0439442_010401 3300042002 Bacteria 1886
135 Ga0439449_0005039 3300042007 Bacteria 5079
136 Ga0439452_005609 3300042010 Bacteria 4022
137 Ga0439457_001827 3300042014 Bacteria 6285
138 Ga0450911_000823 3300042115 Bacteria 8515
139 Ga0439446_0002169 3300042156 Bacteria 4670
140 Ga0450918_002164 3300042531 Bacteria 3755
141 Ga0451577_0007747 3300042876 Bacteria 10526
142 Ga0466972_0000402 3300044658 Bacteria 22938
143 Ga0453683_0005850 3300044673 Bacteria 8508
144 Ga0466961_0019442 3300044693 Bacteria 4368
145 Ga0466971_0029848 3300044719 Bacteria 2439
146 Ga0466959_0055559 3300045049 Bacteria 2890
147 Ga0495638_0067642 3300046460 Bacteria 2193
148 Ga0495583_0000409 3300046506 Bacteria 65136
149 Ga0495606_0003721 3300046507 Bacteria 15904
150 Ga0495632_0003073 3300046519 Bacteria 12129
151 Ga0495643_0083489 3300046522 Bacteria 1658
152 Ga0495648_0035379 3300046524 Bacteria 3238
153 Ga0495648_0070226 3300046524 Bacteria 2036
154 Ga0495656_0027646 3300046615 Bacteria 2268
155 Ga0495625_0002431 3300046660 Bacteria 20158
156 Ga0495649_0000686 3300046694 Bacteria 27567
157 Ga0495649_0004189 3300046694 Bacteria 9464
158 Ga0495626_0063007 3300048091 Bacteria 1683
159 Ga0496104_0122200 3300048907 Bacteria 2500
160 Ga0496110_0045425 3300048913 Bacteria 3840
161 Ga0496113_0054183 3300048916 Bacteria 3001
162 Ga0496125_0124043 3300048928 Bacteria 1835
163 Ga0501298_005834 3300049521 Bacteria 1994
164 Ga0501043_0000371 3300049579 Bacteria 40668
165 Ga0501046_0000488 3300049580 Bacteria 39620
166 Ga0501047_0000564 3300049581 Bacteria 39704
167 Ga0501047_0136147 3300049581 Bacteria 2337
168 Ga0501048_0006811 3300049582 Bacteria 8679
169 Ga0501198_000047 3300049649 Bacteria 40126
170 Ga0501222_000056 3300049662 Bacteria 40303
171 Ga0501045_0004496 3300049824 Bacteria 9633
172 nmdc:mga03683_3780_c1 3300050489 Bacteria 4935
173 nmdc:mga0k408_16394_c1 3300050493 Bacteria 4111
174 nmdc:mga07m45_329_c1 3300050496 Bacteria 19212
175 nmdc:mga07m45_380_c1 3300050496 Bacteria 18186
176 nmdc:mga07m45_56343_c1 3300050496 Bacteria 2222
177 nmdc:mga05p37_222988_c1 3300050507 Bacteria 2274
178 nmdc:mga09592_1374_c1 3300050508 Bacteria 19482
179 nmdc:mga0sz30_13039_c1 3300050516 Bacteria 3246
180 nmdc:mga0sz30_31969_c1 3300050516 Bacteria 2180
181 Ga0500658_0010369 3300053134 Bacteria 3435
182 Ga0500586_004289 3300053145 Bacteria 3471
183 Ga0500622_0004608 3300053156 Bacteria 8558
184 Ga0500636_0002598 3300053177 Bacteria 10020
185 Ga0500661_009368 3300055283 Bacteria 1793
186 2587756415 2585428062 Bacteria 6842168
187 2644302154 2643221654 Bacteria 5273570
188 2904453640 2904449895 Bacteria 6927402
189 2904459063 2904456579 Bacteria 6819253
190 Ga0451576_0066953
191 JGI24739J22299_10017456
192 JGI25156J39149_1000121
193 JGI25157J39369_1000015
194 rootH1_10047439
195 Ga0006562J51391_1025907
196 Ga0055535_1000123
197 Ga0055529_1000159
198 Ga0055540_1001891
199 Ga0070658_10047061
200 Ga0070658_10062305
201 Ga0068869_100024390
202 Ga0070660_100030978
203 Ga0070660_100217419
204 Ga0070671_100023455
205 Ga0070671_100080547
206 Ga0070667_100000623
207 Ga0070708_100137162
208 Ga0068867_100000006
209 Ga0070706_100235408
210 Ga0070679_100121096
211 Ga0070684_100055424
212 Ga0068855_100002212
213 Ga0068855_100032159
214 Ga0068857_100001302
215 Ga0068857_100054051
216 Ga0068856_100000748
217 Ga0068864_100116393
218 Ga0075362_10000908
219 Ga0075362_10008199
220 Ga0075367_10078734
221 Ga0075369_10006601
222 Ga0075366_10002517
223 Ga0075370_10000129
224 Ga0075370_10032184
225 Ga0068865_100092217
226 Ga0099826_10028244
227 Ga0105240_10005729
228 Ga0105240_10025246
229 Ga0105240_10130438
230 Ga0105245_10073383
231 Ga0114129_10132165
232 Ga0105243_10002248
233 Ga0105248_10005577
234 Ga0105237_10003967
235 Ga0105237_10017836
236 Ga0105237_10090093
237 Ga0105239_10001665
238 Ga0105239_10006450
239 Ga0105239_10082908
240 Ga0157377_10000013
241 Ga0209672_102609
242 Ga0209258_100060
243 Ga0209646_1000177
244 Ga0209026_1000021
245 Ga0209677_100168
246 Ga0209759_1000025
247 Ga0209759_1000282
248 Ga0209759_1001883
249 Ga0209455_1000136
250 Ga0209673_1014766
251 Ga0209676_1011908
252 Ga0209051_1000144
253 Ga0209051_1016704
254 Ga0207705_10031313
255 Ga0207695_10004148
256 Ga0207695_10006608
257 Ga0207671_10003147
258 Ga0207671_10051206
259 Ga0207657_10001557
260 Ga0207657_10228045
261 Ga0207652_10055316
262 Ga0207681_10170335
263 Ga0207694_10009065
264 Ga0207687_10093258
265 Ga0207644_10053103
266 Ga0207706_10008759
267 Ga0207709_10002108
268 Ga0207711_10056924
269 Ga0207689_10057062
270 Ga0207667_10009670
271 Ga0207667_10015178
272 Ga0207658_10002534
273 Ga0207702_10001631
274 Ga0207641_10047999
275 Ga0207648_10000006
276 Ga0207674_10002128
277 Ga0207674_10012254
278 Ga0209974_10019076
279 Ga0268266_10034756
280 Ga0268266_10215893
281 Ga0265336_10000048
282 Ga0307515_10001417
283 Ga0307515_10012222
284 Ga0307515_10065324
285 Ga0307515_10116285
286 Ga0265324_10000929
287 Ga0307512_10033274
288 Ga0265328_10012560
289 Ga0265327_10001420
290 Ga0307509_10001185
291 Ga0307509_10043359
292 Ga0307509_10069127
293 Ga0307408_100068478
294 Ga0307508_10000041
295 Ga0307508_10000082
296 Ga0307508_10016992
297 Ga0307508_10030114
298 Ga0307514_10005419
299 Ga0307516_10001084
300 Ga0307405_10011162
301 Ga0307413_10009223
302 Ga0307410_10125023
303 Ga0307406_10000565
304 Ga0307407_10022079
305 Ga0307412_10015881
306 Ga0307409_100100801
307 Ga0307416_100031040
308 Ga0307416_100092280
309 Ga0307411_10028252
310 Ga0307411_10052552
311 Ga0307507_10022173
312 Ga0307507_10075370
313 Ga0307510_10000881
314 Ga0373925_0029043
315 Ga0395899_0153323
316 Ga0395900_0004033
317 Ga0395898_0025833
318 Ga0395905_0027700
319 Ga0395901_0067542
320 Ga0395901_0150372
321 Ga0439436_0000104
322 Ga0439466_0003549
323 Ga0439442_010401
324 Ga0439449_0005039
325 Ga0439452_005609
326 Ga0439457_001827
327 Ga0450911_000823
328 Ga0439446_0002169
329 Ga0450918_002164
330 Ga0451577_0007747
331 Ga0466972_0000402
332 Ga0453683_0005850
333 Ga0466961_0019442
334 Ga0466971_0029848
335 Ga0466959_0055559
336 Ga0495638_0067642
337 Ga0495583_0000409
338 Ga0495606_0003721
339 Ga0495632_0003073
340 Ga0495643_0083489
341 Ga0495648_0035379
342 Ga0495648_0070226
343 Ga0495656_0027646
344 Ga0495625_0002431
345 Ga0495649_0000686
346 Ga0495649_0004189
347 Ga0495626_0063007
348 Ga0496104_0122200
349 Ga0496110_0045425
350 Ga0496113_0054183
351 Ga0496125_0124043
352 Ga0501298_005834
353 Ga0501043_0000371
354 Ga0501046_0000488
355 Ga0501047_0000564
356 Ga0501047_0136147
357 Ga0501048_0006811
358 Ga0501198_000047
359 Ga0501222_000056
360 Ga0501045_0004496
361 nmdc:mga03683_3780_c1
362 nmdc:mga0k408_16394_c1
363 nmdc:mga07m45_329_c1
364 nmdc:mga07m45_380_c1
365 nmdc:mga07m45_56343_c1
366 nmdc:mga05p37_222988_c1
367 nmdc:mga09592_1374_c1
368 nmdc:mga0sz30_13039_c1
369 nmdc:mga0sz30_31969_c1
370 Ga0500658_0010369
371 Ga0500586_004289
372 Ga0500622_0004608
373 Ga0500636_0002598
374 Ga0500661_009368
375 2587756415
376 2644302154
377 2904453640
378 2904459063

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10996

Beta-Casp

Beta-Casp domain

230

349

0.99

PF07521

RMMBL

Zn-dependent metallo-hydrolase RNA specificity domain

362

426

0.97

PF00753

Lactamase_B

Metallo-beta-lactamase superfamily

9

221

0.89

PF12706

Lactamase_B_2

Beta-lactamase superfamily domain

24

209

0.68

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ie0-assembly2.cif.gz_B crystal structure of s378y mutant ttha0252 from thermus thermophilus hb8 0.9162 1 450
3ie0-assembly2.cif.gz_B crystal structure of s378y mutant ttha0252 from thermus thermophilus hb8 0.9142 1 450
3idz-assembly4.cif.gz_D crystal structure of s378q mutant ttha0252 from thermus thermophilus hb8 0.9127 1 450
3idz-assembly4.cif.gz_D crystal structure of s378q mutant ttha0252 from thermus thermophilus hb8 0.9107 1 450
2xr1-assembly2.cif.gz_A dimeric archaeal cleavage and polyadenylation specificity factor with n-terminal kh domains (kh-cpsf) from methanosarcina mazei 0.9098 2 450
ID Description Score Start End Superfamily
2dkfD01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9403 3 450 3.60.15.10
2dkfD01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9329 3 450 3.60.15.10
af_Q57626_2_182_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9086 3 210 3.60.15.10
af_Q60355_2_196_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9028 3 210 3.60.15.10
af_Q57626_2_182_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.8943 3 210 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A352ISF0-F1-model_v4 MBL fold metallo-hydrolase 0.993 1 386 GO:0004521
AF-A0A5E7Y317-F1-model_v4 mRNA 3'-end processing factor 0.9909 2 447 GO:0004521
AF-A0A0W0ZXB0-F1-model_v4 Metallo-beta-lactamase 0.9899 60 450 GO:0004521
AF-Q2T837-F1-model_v4 Metallo-beta-lactamase family protein 0.9898 2 450 GO:0004521
AF-A0A0T6Z930-F1-model_v4 Beta-Casp domain-containing protein 0.9896 2 450 GO:0004521

Map