F291384

General Info

Members Datasets Scaffolds Average Seq Length
189 135 378 329

Family's Representative Sequence

Representative Sequence 3300046471|Ga0495650_0029985|Ga0495650_0029985_1174_2277
Length 367
Sequence LEPYEQRESDRRGGSRCRTGRFVVTRPTCVVIGLVALLNCLFAVAVAAPAQSALKPAGIQAERILDLWNLTLAVCSAVFAAILIACFVALLRAPRVTNSTRPELSTIESAEPGLRRAVVAATAVSAVLLFGLVFADVLTDRALSRLPVTDAVHIELTGHQWWWEARYLPAGGAAGFTLANELHVPVGRPVVVSLVAADVIHTFWAPNLHGKKDMIPGRRATIEFRADRAGTYRGQCAEFCGYEHALMAFLVVADPPAEYDAWAARQREAATSPSDEPEARGQQLFMTAACARCHAIAGTPATGRLGPDLTHLASRRTIAAGTLANDRDALARWIADPRALKPAAMMPPSHLAPGDLQALVTYLGTLK

Samples

Sample ID Description Type Environment
1 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
19 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
20 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
32 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
66 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
67 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
68 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
75 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
78 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
81 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
82 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
83 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
84 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
85 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
86 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
87 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
88 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
89 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
90 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
91 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
92 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
93 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
94 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
95 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
96 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
97 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
98 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
99 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
100 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
101 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
102 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
103 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
104 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
105 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
106 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
107 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
108 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
109 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
110 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
111 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
112 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
113 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
114 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
115 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
116 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
117 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
118 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
119 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
120 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
121 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
122 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
123 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
124 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
125 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
126 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
127 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
128 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
129 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
130 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
131 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
135 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.53
Nodule 0
Rhizoplane 7.41
Rhizosphere 91.01
Stem 0
Stem Tuber 0
Unclassified 2.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495650_0029985 3300046471 Bacteria 2471
2 JGI24740J21852_10041241 3300001979 Unclassified 1392
3 Ga0070658_10273979 3300005327 Bacteria 1436
4 Ga0070676_10005734 3300005328 Bacteria 6618
5 Ga0070676_10069553 3300005328 Bacteria 2110
6 Ga0070680_100234833 3300005336 Bacteria 1549
7 Ga0070660_100000421 3300005339 Bacteria 28145
8 Ga0070691_10005390 3300005341 Bacteria 5818
9 Ga0070661_100007181 3300005344 Bacteria 7675
10 Ga0070661_100175272 3300005344 Bacteria 1630
11 Ga0070661_100280179 3300005344 Bacteria 1293
12 Ga0070669_100073257 3300005353 Bacteria 2537
13 Ga0070669_100165384 3300005353 Bacteria 1722
14 Ga0070674_100077621 3300005356 Bacteria 2365
15 Ga0070673_100043421 3300005364 Bacteria 3474
16 Ga0070714_100004093 3300005435 Bacteria 10964
17 Ga0070714_100171043 3300005435 Bacteria 1971
18 Ga0070701_10002270 3300005438 Bacteria 7367
19 Ga0070700_100000696 3300005441 Bacteria 16615
20 Ga0070663_100016206 3300005455 Bacteria 4832
21 Ga0070662_100140801 3300005457 Bacteria 1869
22 Ga0068867_100015455 3300005459 Bacteria 5413
23 Ga0070686_100033379 3300005544 Bacteria 3162
24 Ga0070695_100003407 3300005545 Bacteria 9296
25 Ga0070704_100003217 3300005549 Bacteria 9339
26 Ga0068855_100091583 3300005563 Bacteria 3507
27 Ga0070664_100003991 3300005564 Bacteria 11864
28 Ga0068857_100151480 3300005577 Bacteria 2101
29 Ga0068854_100008303 3300005578 Bacteria 6668
30 Ga0068856_100011210 3300005614 Bacteria 8700
31 Ga0070702_100005448 3300005615 Bacteria 5928
32 Ga0068852_100004297 3300005616 Bacteria 10055
33 Ga0068861_100002274 3300005719 Bacteria 12474
34 Ga0068851_10032194 3300005834 Bacteria 2609
35 Ga0068871_100126747 3300006358 Bacteria 2161
36 Ga0105243_10050837 3300009148 Bacteria 3276
37 Ga0105243_10146303 3300009148 Bacteria 2022
38 Ga0105243_10186338 3300009148 Bacteria 1809
39 Ga0105242_10129856 3300009176 Bacteria 2173
40 Ga0105238_10195416 3300009551 Bacteria 1999
41 Ga0157371_10010478 3300013102 Bacteria 7215
42 Ga0157370_10245855 3300013104 Bacteria 1655
43 Ga0157369_10000106 3300013105 Bacteria 117964
44 Ga0157369_10057656 3300013105 Bacteria 4189
45 Ga0157374_10249058 3300013296 Unclassified 1748
46 Ga0157378_10348244 3300013297 Bacteria 1446
47 Ga0213876_10054977 3300021384 Bacteria 2101
48 Ga0207645_10002928 3300025907 Bacteria 13196
49 Ga0207657_10002546 3300025919 Bacteria 19710
50 Ga0207657_10013094 3300025919 Bacteria 8150
51 Ga0207649_10137186 3300025920 Bacteria 1669
52 Ga0207649_10272142 3300025920 Bacteria 1228
53 Ga0207681_10024622 3300025923 Bacteria 3864
54 Ga0207686_10055059 3300025934 Bacteria 2494
55 Ga0207709_10039463 3300025935 Bacteria 2820
56 Ga0207709_10088177 3300025935 Bacteria 2019
57 Ga0207669_10019067 3300025937 Bacteria 3563
58 Ga0207691_10002271 3300025940 Bacteria 18831
59 Ga0207679_10172904 3300025945 Bacteria 1780
60 Ga0207667_10006657 3300025949 Bacteria 13967
61 Ga0207651_10034331 3300025960 Bacteria 3284
62 Ga0207651_10057897 3300025960 Bacteria 2675
63 Ga0207640_10172121 3300025981 Bacteria 1615
64 Ga0207658_10018523 3300025986 Bacteria 4809
65 Ga0207677_10008945 3300026023 Bacteria 5617
66 Ga0207703_10178144 3300026035 Bacteria 1874
67 Ga0207678_10026563 3300026067 Bacteria 5050
68 Ga0207678_10094186 3300026067 Bacteria 2559
69 Ga0207708_10001373 3300026075 Bacteria 18323
70 Ga0207702_10010126 3300026078 Bacteria 7897
71 Ga0207702_10288395 3300026078 Bacteria 1554
72 Ga0207641_10138822 3300026088 Bacteria 2190
73 Ga0207648_10004534 3300026089 Bacteria 14239
74 Ga0207648_10081651 3300026089 Bacteria 2819
75 Ga0207674_10007483 3300026116 Bacteria 12729
76 Ga0207675_100001911 3300026118 Bacteria 20781
77 Ga0207683_10001298 3300026121 Bacteria 22583
78 Ga0207698_10039173 3300026142 Bacteria 3508
79 Ga0207698_10552206 3300026142 Bacteria 1129
80 Ga0307409_100001336 3300031995 Bacteria 11970
81 Ga0307416_100434280 3300032002 Bacteria 1361
82 Ga0373943_0005760 3300035170 Bacteria 5563
83 Ga0373946_0029838 3300035171 Bacteria 2174
84 Ga0373927_0296334 3300035695 Bacteria 1064
85 Ga0395899_0026220 3300037312 Bacteria 4398
86 Ga0395899_0162341 3300037312 Bacteria 1578
87 Ga0395900_0048313 3300037418 Bacteria 4383
88 Ga0395900_0088544 3300037418 Bacteria 3183
89 Ga0395900_0119572 3300037418 Bacteria 2704
90 Ga0395900_0120586 3300037418 Bacteria 2691
91 Ga0395898_0036187 3300037466 Bacteria 4903
92 Ga0395898_0037843 3300037466 Bacteria 4783
93 Ga0395905_0014304 3300037471 Bacteria 7584
94 Ga0395905_0016298 3300037471 Bacteria 7061
95 Ga0395905_0020385 3300037471 Bacteria 6281
96 Ga0395901_0260356 3300038443 Bacteria 1806
97 Ga0466969_0003975 3300044656 Bacteria 7850
98 Ga0466966_0000003 3300044684 Bacteria 233677
99 Ga0466966_0017826 3300044684 Bacteria 4688
100 Ga0466966_0033708 3300044684 Bacteria 3314
101 Ga0466966_0157465 3300044684 Bacteria 1383
102 Ga0466961_0037439 3300044693 Bacteria 3111
103 Ga0466963_0014219 3300044694 Bacteria 4904
104 Ga0466963_0071117 3300044694 Bacteria 2341
105 Ga0466963_0256666 3300044694 Unclassified 1227
106 Ga0466970_0000833 3300044765 Bacteria 14815
107 Ga0466957_0004243 3300044842 Bacteria 7948
108 Ga0466957_0023219 3300044842 Bacteria 3665
109 Ga0466957_0027192 3300044842 Bacteria 3398
110 Ga0466959_0083221 3300045049 Bacteria 2305
111 Ga0466959_0086781 3300045049 Bacteria 2251
112 Ga0466959_0112998 3300045049 Bacteria 1936
113 Ga0466958_0000393 3300045836 Bacteria 17891
114 Ga0466967_0020740 3300045976 Bacteria 5320
115 Ga0466967_0075599 3300045976 Bacteria 3027
116 Ga0495638_0003418 3300046460 Bacteria 12517
117 Ga0495638_0050661 3300046460 Bacteria 2592
118 Ga0495650_0039320 3300046471 Bacteria 2042
119 Ga0495582_0017938 3300046473 Bacteria 3869
120 Ga0495605_0000262 3300046474 Bacteria 61506
121 Ga0495605_0001773 3300046474 Bacteria 13843
122 Ga0495584_0080070 3300046491 Bacteria 1643
123 Ga0495585_0021301 3300046492 Bacteria 3722
124 Ga0495585_0141558 3300046492 Bacteria 1259
125 Ga0495596_0019705 3300046500 Bacteria 2768
126 Ga0495607_0002797 3300046501 Bacteria 13878
127 Ga0495607_0026613 3300046501 Bacteria 3588
128 Ga0495583_0027702 3300046506 Bacteria 2794
129 Ga0495606_0014608 3300046507 Bacteria 6110
130 Ga0495616_0067708 3300046513 Bacteria 1735
131 Ga0495631_0005617 3300046518 Bacteria 6548
132 Ga0495631_0026806 3300046518 Bacteria 2642
133 Ga0495643_0000829 3300046522 Bacteria 33683
134 Ga0495644_0031286 3300046523 Bacteria 2010
135 Ga0495663_0006402 3300046525 Bacteria 3251
136 Ga0495642_0021521 3300046528 Bacteria 2536
137 Ga0495597_0015270 3300046542 Bacteria 3637
138 Ga0495597_0044025 3300046542 Bacteria 1985
139 Ga0495645_0180531 3300046543 Bacteria 1446
140 Ga0495622_0007346 3300046557 Bacteria 5118
141 Ga0495633_0015574 3300046558 Bacteria 3941
142 Ga0495656_0048958 3300046615 Bacteria 1798
143 Ga0495668_0021441 3300046616 Bacteria 3704
144 Ga0495668_0045011 3300046616 Bacteria 2453
145 Ga0495668_0076424 3300046616 Bacteria 1838
146 Ga0495611_0013906 3300046648 Bacteria 3433
147 Ga0495625_0123634 3300046660 Bacteria 1758
148 Ga0495661_0001664 3300046665 Bacteria 18107
149 Ga0495661_0051401 3300046665 Bacteria 2488
150 Ga0495588_0017872 3300046674 Bacteria 3451
151 Ga0495669_0008107 3300046684 Bacteria 4408
152 Ga0495670_0010950 3300046691 Bacteria 4458
153 Ga0495670_0026685 3300046691 Bacteria 2859
154 Ga0495671_0035671 3300046692 Bacteria 2524
155 Ga0495649_0008775 3300046694 Bacteria 6060
156 Ga0495589_0000116 3300046794 Bacteria 75640
157 Ga0495589_0001819 3300046794 Bacteria 12133
158 Ga0495589_0104668 3300046794 Bacteria 1368
159 Ga0495660_0000145 3300046810 Bacteria 76912
160 Ga0495660_0158188 3300046810 Bacteria 1113
161 Ga0495581_0101589 3300047315 Bacteria 1671
162 Ga0495672_0021982 3300047320 Bacteria 4154
163 Ga0495676_0000542 3300047321 Bacteria 30993
164 Ga0495683_0006225 3300047323 Bacteria 6530
165 Ga0495683_0013240 3300047323 Bacteria 4320
166 Ga0495687_000635 3300047443 Bacteria 40213
167 Ga0495687_015511 3300047443 Bacteria 3871
168 Ga0495686_0000415 3300047472 Bacteria 67643
169 Ga0495626_0000171 3300048091 Bacteria 80200
170 Ga0496100_0109946 3300048903 Bacteria 1913
171 Ga0496102_0179454 3300048905 Bacteria 1995
172 Ga0496105_0074926 3300048908 Bacteria 2796
173 Ga0496105_0119562 3300048908 Bacteria 2173
174 Ga0496106_0130833 3300048909 Bacteria 1968
175 Ga0496107_0178501 3300048910 Bacteria 1576
176 Ga0496109_0067035 3300048912 Bacteria 3287
177 Ga0496110_0036598 3300048913 Bacteria 4262
178 Ga0496110_0423740 3300048913 Bacteria 1213
179 Ga0496112_0026749 3300048915 Bacteria 5557
180 Ga0496112_0239396 3300048915 Unclassified 1768
181 Ga0496113_0079819 3300048916 Bacteria 2505
182 Ga0496114_0025205 3300048917 Bacteria 4860
183 Ga0496115_0272502 3300048918 Bacteria 1390
184 Ga0496124_0124729 3300048927 Bacteria 2053
185 Ga0501034_0186078 3300049571 Bacteria 2040
186 Ga0501047_0077912 3300049581 Bacteria 3188
187 Ga0501047_0105621 3300049581 Bacteria 2697
188 Ga0501047_0318275 3300049581 Bacteria 1396
189 Ga0500622_0001863 3300053156 Bacteria 15960
190 Ga0495650_0029985
191 JGI24740J21852_10041241
192 Ga0070658_10273979
193 Ga0070676_10005734
194 Ga0070676_10069553
195 Ga0070680_100234833
196 Ga0070660_100000421
197 Ga0070691_10005390
198 Ga0070661_100007181
199 Ga0070661_100175272
200 Ga0070661_100280179
201 Ga0070669_100073257
202 Ga0070669_100165384
203 Ga0070674_100077621
204 Ga0070673_100043421
205 Ga0070714_100004093
206 Ga0070714_100171043
207 Ga0070701_10002270
208 Ga0070700_100000696
209 Ga0070663_100016206
210 Ga0070662_100140801
211 Ga0068867_100015455
212 Ga0070686_100033379
213 Ga0070695_100003407
214 Ga0070704_100003217
215 Ga0068855_100091583
216 Ga0070664_100003991
217 Ga0068857_100151480
218 Ga0068854_100008303
219 Ga0068856_100011210
220 Ga0070702_100005448
221 Ga0068852_100004297
222 Ga0068861_100002274
223 Ga0068851_10032194
224 Ga0068871_100126747
225 Ga0105243_10050837
226 Ga0105243_10146303
227 Ga0105243_10186338
228 Ga0105242_10129856
229 Ga0105238_10195416
230 Ga0157371_10010478
231 Ga0157370_10245855
232 Ga0157369_10000106
233 Ga0157369_10057656
234 Ga0157374_10249058
235 Ga0157378_10348244
236 Ga0213876_10054977
237 Ga0207645_10002928
238 Ga0207657_10002546
239 Ga0207657_10013094
240 Ga0207649_10137186
241 Ga0207649_10272142
242 Ga0207681_10024622
243 Ga0207686_10055059
244 Ga0207709_10039463
245 Ga0207709_10088177
246 Ga0207669_10019067
247 Ga0207691_10002271
248 Ga0207679_10172904
249 Ga0207667_10006657
250 Ga0207651_10034331
251 Ga0207651_10057897
252 Ga0207640_10172121
253 Ga0207658_10018523
254 Ga0207677_10008945
255 Ga0207703_10178144
256 Ga0207678_10026563
257 Ga0207678_10094186
258 Ga0207708_10001373
259 Ga0207702_10010126
260 Ga0207702_10288395
261 Ga0207641_10138822
262 Ga0207648_10004534
263 Ga0207648_10081651
264 Ga0207674_10007483
265 Ga0207675_100001911
266 Ga0207683_10001298
267 Ga0207698_10039173
268 Ga0207698_10552206
269 Ga0307409_100001336
270 Ga0307416_100434280
271 Ga0373943_0005760
272 Ga0373946_0029838
273 Ga0373927_0296334
274 Ga0395899_0026220
275 Ga0395899_0162341
276 Ga0395900_0048313
277 Ga0395900_0088544
278 Ga0395900_0119572
279 Ga0395900_0120586
280 Ga0395898_0036187
281 Ga0395898_0037843
282 Ga0395905_0014304
283 Ga0395905_0016298
284 Ga0395905_0020385
285 Ga0395901_0260356
286 Ga0466969_0003975
287 Ga0466966_0000003
288 Ga0466966_0017826
289 Ga0466966_0033708
290 Ga0466966_0157465
291 Ga0466961_0037439
292 Ga0466963_0014219
293 Ga0466963_0071117
294 Ga0466963_0256666
295 Ga0466970_0000833
296 Ga0466957_0004243
297 Ga0466957_0023219
298 Ga0466957_0027192
299 Ga0466959_0083221
300 Ga0466959_0086781
301 Ga0466959_0112998
302 Ga0466958_0000393
303 Ga0466967_0020740
304 Ga0466967_0075599
305 Ga0495638_0003418
306 Ga0495638_0050661
307 Ga0495650_0039320
308 Ga0495582_0017938
309 Ga0495605_0000262
310 Ga0495605_0001773
311 Ga0495584_0080070
312 Ga0495585_0021301
313 Ga0495585_0141558
314 Ga0495596_0019705
315 Ga0495607_0002797
316 Ga0495607_0026613
317 Ga0495583_0027702
318 Ga0495606_0014608
319 Ga0495616_0067708
320 Ga0495631_0005617
321 Ga0495631_0026806
322 Ga0495643_0000829
323 Ga0495644_0031286
324 Ga0495663_0006402
325 Ga0495642_0021521
326 Ga0495597_0015270
327 Ga0495597_0044025
328 Ga0495645_0180531
329 Ga0495622_0007346
330 Ga0495633_0015574
331 Ga0495656_0048958
332 Ga0495668_0021441
333 Ga0495668_0045011
334 Ga0495668_0076424
335 Ga0495611_0013906
336 Ga0495625_0123634
337 Ga0495661_0001664
338 Ga0495661_0051401
339 Ga0495588_0017872
340 Ga0495669_0008107
341 Ga0495670_0010950
342 Ga0495670_0026685
343 Ga0495671_0035671
344 Ga0495649_0008775
345 Ga0495589_0000116
346 Ga0495589_0001819
347 Ga0495589_0104668
348 Ga0495660_0000145
349 Ga0495660_0158188
350 Ga0495581_0101589
351 Ga0495672_0021982
352 Ga0495676_0000542
353 Ga0495683_0006225
354 Ga0495683_0013240
355 Ga0495687_000635
356 Ga0495687_015511
357 Ga0495686_0000415
358 Ga0495626_0000171
359 Ga0496100_0109946
360 Ga0496102_0179454
361 Ga0496105_0074926
362 Ga0496105_0119562
363 Ga0496106_0130833
364 Ga0496107_0178501
365 Ga0496109_0067035
366 Ga0496110_0036598
367 Ga0496110_0423740
368 Ga0496112_0026749
369 Ga0496112_0239396
370 Ga0496113_0079819
371 Ga0496114_0025205
372 Ga0496115_0272502
373 Ga0496124_0124729
374 Ga0501034_0186078
375 Ga0501047_0077912
376 Ga0501047_0105621
377 Ga0501047_0318275
378 Ga0500622_0001863

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00116

COX2

Cytochrome C oxidase subunit II, periplasmic domain

168

254

0.92

PF00034

Cytochrom_C

Cytochrome c

278

367

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6pty-assembly2.cif.gz_B soluble model of human cua (tt3lh) 0.9139 125 227
8gym-assembly1.cif.gz_c2 cryo-em structure of tetrahymena thermophila respiratory mega-complex mc iv2+(i+iii2+ii)2 0.9139 153 234
8bqs-assembly1.cif.gz_Db cryo-em structure of the i-ii-iii2-iv2 respiratory supercomplex from tetrahymena thermophila 0.9129 153 234
7w5z-assembly1.cif.gz_c2 cryo-em structure of tetrahymena thermophila mitochondrial complex iv, composite dimer model 0.9126 153 234
6ptt-assembly2.cif.gz_B soluble model of arabidopsis thaliana cua (tt3lat) 0.9117 125 227
ID Description Score Start End Superfamily
af_Q8I6V2_60_165_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9415 153 233 2.60.40.420
af_A0A2P2CLF0_113_253_2.60.40.420 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9246 121 238 2.60.40.420
2yevE02 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.919 124 339 2.60.40.420
3hb3B01 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.9029 121 238 2.60.40.420
5wehH02 Mainly Beta;Sandwich;Immunoglobulin-like;Cupredoxins - 0.8981 121 236 2.60.40.420
ID Description Score Start End GO Terms
AF-A0A7V9QDC1-F1-model_v4 C-type cytochrome 0.9774 150 339 GO:0004129
GO:0005507
GO:0016020
GO:0020037
GO:0042773
AF-A0A529M468-F1-model_v4 C-type cytochrome 0.9734 131 339 GO:0004129
GO:0005507
GO:0016020
GO:0020037
GO:0042773
AF-A0A2V8GJU3-F1-model_v4 Cytochrome c oxidase subunit II 0.9684 177 339 GO:0004129
GO:0005507
GO:0016020
GO:0020037
GO:0042773
AF-A0A435K946-F1-model_v4 deleted 0.9666 124 339
AF-A0A2V8GJU3-F1-model_v4 Cytochrome c oxidase subunit II 0.9626 177 339 GO:0004129
GO:0005507
GO:0016020
GO:0020037
GO:0042773

Map