F292853

General Info

Members Datasets Scaffolds Average Seq Length
190 158 185 366

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_0338121|Ga0436365_0338121_55_1263
Length 402
Sequence VEQRQSSVESLVEKTMASSSIPSLTTSAFGDTYRGKRVLMTGHTGFKDSWLCERLLTLGAEVSGITLEPPTSPALFNQLQLSNRLQHNLIDIRDEERVADAIRKFQPQFLFHLAAQPLVRLSYEKAVENYEINVMGTIHVLEALRRQSSQPCAAVFITTDKCYENREWIYAYREVDLLGGHDPYSSSKAAAEIAISAYRRSFFPPDHHAIKVASARAGNVIGGGDWALDRIVPDSMRALSRGESIPVRNKTSTRPWQHVLEPLSGYLWLGAVLQAPLLVERSSAAEFCAAFNFGPSLSSNRKVRDLVEEILKNRSGNWVDRSNPDAVHEASLLNLSTDKAHHLLRWQPVWSFKETVAHTVQWYDAVEKDSATIGDLTYNQINSYTRDANRQGIAWAGPARLP

Samples

Sample ID Description Type Environment
1 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
2 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
3 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
4 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
5 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
27 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
63 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
66 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
67 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
68 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
69 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
70 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
71 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
72 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
73 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
74 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
75 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
76 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
77 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
78 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
79 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
80 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
81 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
82 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
83 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
84 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
85 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
86 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
87 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
88 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
89 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
90 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
91 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
92 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
94 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
95 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
96 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
97 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
98 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
99 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
100 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
101 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
102 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
103 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
104 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
105 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
106 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
107 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
108 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
109 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
110 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
111 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
112 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
113 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
114 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
115 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
116 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
117 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
118 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
119 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
120 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
121 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
122 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
123 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
124 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
125 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
126 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
127 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
128 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
131 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
132 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
133 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
137 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
138 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
139 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
140 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
141 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
142 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
143 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
144 3300049687 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought Metagenome Rhizosphere
145 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
148 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
149 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
150 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
151 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
152 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
153 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
154 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
155 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
156 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
157 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
158 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.37
Metatranscriptomes 0
Isolates 2.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.79
Nodule 0.53
Rhizoplane 1.05
Rhizosphere 83.68
Stem 0
Stem Tuber 0
Unclassified 8.95

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10003585 3300003320 Bacteria 34811
2 rootL2_10041873 3300003322 Bacteria 3740
3 rootL2_10098614 3300003322 Bacteria 1820
4 rootH1_10300848 3300003323 Bacteria 2234
5 Ga0055525_1000021 3300003759 Bacteria 370802
6 Ga0065165_1000026 3300005262 Bacteria 233376
7 Ga0068869_100052577 3300005334 Bacteria 2958
8 Ga0070680_100025371 3300005336 Bacteria 4737
9 Ga0068868_100005261 3300005338 Bacteria 9083
10 Ga0068868_100007691 3300005338 Bacteria 7687
11 Ga0070689_100000443 3300005340 Bacteria 24402
12 Ga0070673_100008832 3300005364 Bacteria 6730
13 Ga0070685_10041746 3300005466 Bacteria 2615
14 Ga0070707_100295456 3300005468 Bacteria 1574
15 Ga0070679_100014235 3300005530 Bacteria 7636
16 Ga0068855_100025428 3300005563 Bacteria 7084
17 Ga0068864_100000406 3300005618 Bacteria 37364
18 Ga0068864_100168379 3300005618 Bacteria 1996
19 Ga0068863_100005106 3300005841 Bacteria 12948
20 Ga0068858_100001709 3300005842 Bacteria 22438
21 Ga0068860_100001302 3300005843 Bacteria 27105
22 Ga0068860_100303752 3300005843 Bacteria 1564
23 Ga0081539_10003806 3300005985 Bacteria 17742
24 Ga0070717_10000058 3300006028 Bacteria 95200
25 Ga0070716_100087938 3300006173 Bacteria 1873
26 Ga0070712_100094964 3300006175 Bacteria 2192
27 Ga0068871_100029965 3300006358 Unclassified 4280
28 Ga0075428_100164469 3300006844 Bacteria 2407
29 Ga0075430_100003424 3300006846 Bacteria 13262
30 Ga0075431_100000364 3300006847 Bacteria 35896
31 Ga0075429_100082795 3300006880 Bacteria 2797
32 Ga0075429_100146553 3300006880 Bacteria 2066
33 Ga0068865_100149827 3300006881 Bacteria 1769
34 Ga0105245_10001983 3300009098 Bacteria 18593
35 Ga0105245_10062991 3300009098 Unclassified 3348
36 Ga0114129_10001578 3300009147 Bacteria 30952
37 Ga0114129_10053859 3300009147 Bacteria 5643
38 Ga0105249_10000524 3300009553 Bacteria 35314
39 Ga0157373_10000248 3300013100 Bacteria 44217
40 Ga0157370_10000885 3300013104 Bacteria 38082
41 Ga0213876_10021896 3300021384 Bacteria 3381
42 Ga0209563_100005 3300025230 Bacteria 1774893
43 Ga0209148_1000425 3300025254 Bacteria 46888
44 Ga0209455_1000468 3300025272 Bacteria 30358
45 Ga0209130_1000150 3300025284 Bacteria 108274
46 Ga0209025_1009742 3300025294 Bacteria 6636
47 Ga0207695_10119486 3300025913 Bacteria 2606
48 Ga0207693_10033527 3300025915 Unclassified 4053
49 Ga0207660_10001811 3300025917 Bacteria 14238
50 Ga0207652_10001300 3300025921 Bacteria 22206
51 Ga0207646_10102680 3300025922 Bacteria 2564
52 Ga0207687_10078928 3300025927 Unclassified 2371
53 Ga0207670_10000648 3300025936 Bacteria 18425
54 Ga0207670_10007076 3300025936 Bacteria 6248
55 Ga0207665_10071060 3300025939 Bacteria 2376
56 Ga0207667_10163330 3300025949 Bacteria 2290
57 Ga0207712_10008469 3300025961 Bacteria 6502
58 Ga0207677_10001576 3300026023 Bacteria 12068
59 Ga0207677_10002693 3300026023 Bacteria 9368
60 Ga0207703_10000646 3300026035 Bacteria 34969
61 Ga0207703_10325826 3300026035 Bacteria 1408
62 Ga0207708_10203982 3300026075 Bacteria 1578
63 Ga0207641_10005604 3300026088 Bacteria 10696
64 Ga0207676_10000023 3300026095 Bacteria 266848
65 Ga0207674_10414814 3300026116 Bacteria 1301
66 Ga0268264_10029525 3300028381 Bacteria 4492
67 Ga0268264_10241380 3300028381 Bacteria 1674
68 Ga0265337_1004736 3300028556 Bacteria 5584
69 Ga0265337_1007115 3300028556 Bacteria 4225
70 Ga0265326_10020699 3300028558 Bacteria 1885
71 Ga0265338_10000200 3300028800 Bacteria 113123
72 Ga0265338_10000263 3300028800 Bacteria 95638
73 Ga0265338_10123514 3300028800 Bacteria 2059
74 Ga0265324_10000259 3300029957 Bacteria 39278
75 Ga0265324_10008818 3300029957 Bacteria 3975
76 Ga0265320_10004192 3300031240 Bacteria 9473
77 Ga0265320_10010178 3300031240 Bacteria 5618
78 Ga0265320_10084440 3300031240 Bacteria 1479
79 Ga0265331_10001541 3300031250 Bacteria 16945
80 Ga0265327_10000012 3300031251 Bacteria 530403
81 Ga0265327_10004079 3300031251 Bacteria 13216
82 Ga0265327_10005773 3300031251 Bacteria 10188
83 Ga0265316_10108925 3300031344 Bacteria 2099
84 Ga0307513_10127431 3300031456 Bacteria 2498
85 Ga0307509_10112451 3300031507 Bacteria 2723
86 Ga0307509_10258864 3300031507 Bacteria 1517
87 Ga0316579_10028099 3300031691 Bacteria 2560
88 Ga0265314_10079789 3300031711 Unclassified 2163
89 Ga0307414_10002024 3300032004 Bacteria 10536
90 Ga0316585_10023894 3300032137 Bacteria 1888
91 Ga0316580_10021575 3300032139 Bacteria 1985
92 Ga0373930_0000202 3300034816 Bacteria 7326
93 Ga0373950_0003296 3300034818 Bacteria 2298
94 Ga0373928_0000136 3300035084 Bacteria 13895
95 Ga0373929_0000121 3300035085 Bacteria 12972
96 Ga0373944_0006931 3300035089 Bacteria 3026
97 Ga0373949_0003810 3300035090 Bacteria 3517
98 Ga0373951_0002879 3300035091 Bacteria 4273
99 Ga0373932_0000001 3300035112 Bacteria 1459067
100 Ga0373955_0132291 3300035172 Unclassified 1457
101 Ga0373962_0000013 3300035242 Bacteria 49373
102 Ga0316574_0212974 3300035398 Bacteria 1239
103 Ga0373931_0000002 3300035691 Bacteria 599830
104 Ga0373935_0258463 3300035692 Unclassified 1221
105 Ga0373927_0002052 3300035695 Bacteria 14854
106 Ga0373927_0063366 3300035695 Bacteria 2391
107 Ga0316584_0016949 3300036712 Bacteria 5227
108 Ga0373925_0002062 3300037068 Bacteria 16567
109 Ga0373925_0259382 3300037068 Unclassified 1396
110 Ga0395905_0000036 3300037471 Bacteria 271733
111 Ga0436364_0049513 3300037853 Bacteria 17259
112 Ga0436365_0338121 3300039437 Bacteria 6143
113 Ga0436365_1174468 3300039437 Bacteria 56058
114 Ga0450911_000168 3300042115 Bacteria 25689
115 Ga0451577_0000869 3300042876 Bacteria 44966
116 Ga0451577_0413072 3300042876 Bacteria 1225
117 Ga0466963_0000221 3300044694 Bacteria 24495
118 Ga0453684_0305675 3300044712 Bacteria 1806
119 Ga0453684_0482393 3300044712 Bacteria 1375
120 Ga0466967_0012345 3300045976 Bacteria 6530
121 Ga0495627_000002 3300046453 Bacteria 903861
122 Ga0495603_0051116 3300046455 Unclassified 2456
123 Ga0495629_0099033 3300046459 Unclassified 2034
124 Ga0495638_0001044 3300046460 Bacteria 27394
125 Ga0495638_0205842 3300046460 Bacteria 1108
126 Ga0495582_0023536 3300046473 Unclassified 3369
127 Ga0495616_0001065 3300046513 Bacteria 19541
128 Ga0495618_0045978 3300046514 Unclassified 2755
129 Ga0495632_0049067 3300046519 Bacteria 2088
130 Ga0495663_0000877 3300046525 Bacteria 10141
131 Ga0495654_0000006 3300046530 Bacteria 451432
132 Ga0495665_0072457 3300046531 Unclassified 1814
133 Ga0495587_0053311 3300046536 Unclassified 2385
134 Ga0495597_0045455 3300046542 Bacteria 1948
135 Ga0495625_0045556 3300046660 Bacteria 3170
136 Ga0495635_0030248 3300046663 Unclassified 3763
137 Ga0495657_0107650 3300046675 Unclassified 1769
138 Ga0495624_0023592 3300046690 Unclassified 4056
139 Ga0495649_0105138 3300046694 Bacteria 1499
140 Ga0495600_0056938 3300046809 Bacteria 2554
141 Ga0495581_0051784 3300047315 Bacteria 2371
142 Ga0495604_0062338 3300047317 Unclassified 2849
143 Ga0495674_0040082 3300047319 Unclassified 4192
144 Ga0495672_0035241 3300047320 Bacteria 3083
145 Ga0495676_0040243 3300047321 Unclassified 3860
146 Ga0495684_0065102 3300047471 Unclassified 2771
147 Ga0495686_0016110 3300047472 Bacteria 5080
148 Ga0496109_0346182 3300048912 Bacteria 1404
149 Ga0496115_0001721 3300048918 Bacteria 15697
150 Ga0496121_0002612 3300048924 Bacteria 27213
151 Ga0496124_0028679 3300048927 Bacteria 4976
152 Ga0496125_0006720 3300048928 Bacteria 12368
153 Ga0496125_0021749 3300048928 Bacteria 5970
154 Ga0495678_090242 3300049459 Bacteria 1081
155 Ga0501033_0000058 3300049570 Bacteria 107337
156 Ga0501034_0001165 3300049571 Bacteria 36409
157 Ga0501034_0018845 3300049571 Bacteria 7073
158 Ga0501038_0009970 3300049574 Bacteria 8698
159 Ga0501038_0121996 3300049574 Bacteria 2148
160 Ga0501068_0000404 3300049584 Bacteria 21915
161 Ga0501070_0132880 3300049586 Bacteria 2055
162 Ga0501071_0002423 3300049587 Bacteria 11305
163 Ga0501072_0062431 3300049588 Bacteria 2939
164 Ga0501073_0003831 3300049589 Bacteria 11282
165 Ga0501074_0000758 3300049590 Bacteria 20308
166 Ga0501076_0075099 3300049592 Bacteria 2709
167 Ga0501077_0020449 3300049593 Bacteria 4190
168 Ga0501258_000567 3300049687 Bacteria 2584
169 Ga0501079_0000576 3300049741 Bacteria 24244
170 Ga0501080_0014459 3300049742 Bacteria 7269
171 Ga0501080_0260566 3300049742 Bacteria 1580
172 Ga0501083_0033951 3300049744 Bacteria 3490
173 Ga0501035_0123636 3300049822 Bacteria 2260
174 nmdc:mga05p37_52313_c1 3300050507 Bacteria 5022
175 nmdc:mga05p37_658_c1 3300050507 Bacteria 38217
176 nmdc:mga09592_77216_c1 3300050508 Bacteria 2833
177 nmdc:mga0qj67_26674_c1 3300050509 Bacteria 4473
178 nmdc:mga06r32_2236_c1 3300050510 Bacteria 17323
179 nmdc:mga06r32_373398_c1 3300050510 Bacteria 1409
180 Ga0495601_0171001 3300053077 Unclassified 1420
181 Ga0500641_0000062 3300053096 Bacteria 45077
182 Ga0500593_067184 3300053117 Bacteria 1564
183 Ga0500559_0155503 3300053136 Bacteria 1074
184 Ga0500616_0010226 3300053153 Bacteria 5626
185 Ga0501084_0004339 3300054114 Bacteria 11556

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049459 Ga0495678_090242 Ga0495678_090242_20_898 289
2 3300049744 Ga0501083_0033951 Ga0501083_0033951_2600_3478 289
3 3300049742 Ga0501080_0260566 Ga0501080_0260566_643_1563 303
4 3300049588 Ga0501072_0062431 Ga0501072_0062431_395_1375 309
5 3300035172 Ga0373955_0132291 Ga0373955_0132291_36_1058 310
6 3300046536 Ga0495587_0053311 Ga0495587_0053311_41_1069 310
7 3300046542 Ga0495597_0045455 Ga0495597_0045455_497_1582 323
8 3300053136 Ga0500559_0155503 Ga0500559_0155503_10_1029 334
9 3300035692 Ga0373935_0258463 Ga0373935_0258463_65_1162 335
10 3300046455 Ga0495603_0051116 Ga0495603_0051116_200_1303 335
11 3300046459 Ga0495629_0099033 Ga0495629_0099033_65_1162 335
12 3300046809 Ga0495600_0056938 Ga0495600_0056938_1432_2535 335
13 3300047315 Ga0495581_0051784 Ga0495581_0051784_170_1273 335
14 3300047319 Ga0495674_0040082 Ga0495674_0040082_1681_2784 335
15 3300047471 Ga0495684_0065102 Ga0495684_0065102_489_1592 335
16 3300031251 Ga0265327_10005773 Ga0265327_1000577310 341
17 3300009098 Ga0105245_10062991 Ga0105245_100629913 342
18 3300009553 Ga0105249_10000524 Ga0105249_1000052414 342
19 3300025927 Ga0207687_10078928 Ga0207687_100789282 342
20 3300005338 Ga0068868_100007691 Ga0068868_1000076914 344
21 3300026023 Ga0207677_10001576 Ga0207677_1000157611 344
22 3300049687 Ga0501258_000567 Ga0501258_000567_691_1761 344
23 3300005618 Ga0068864_100168379 Ga0068864_1001683792 345
24 3300005841 Ga0068863_100005106 Ga0068863_1000051063 345
25 3300005843 Ga0068860_100303752 Ga0068860_1003037522 345
26 3300025961 Ga0207712_10008469 Ga0207712_100084697 345
27 3300026035 Ga0207703_10325826 Ga0207703_103258262 345
28 3300026088 Ga0207641_10005604 Ga0207641_100056043 345
29 3300028381 Ga0268264_10241380 Ga0268264_102413802 345
30 3300042876 Ga0451577_0413072 Ga0451577_0413072_16_1179 345
31 3300005985 Ga0081539_10003806 Ga0081539_1000380619 347
32 iso_pu_bacteria 2881955468 2881955892 347
33 3300005340 Ga0070689_100000443 Ga0070689_1000004434 348
34 3300005364 Ga0070673_100008832 Ga0070673_1000088327 348
35 3300005618 Ga0068864_100000406 Ga0068864_1000004064 348
36 3300005842 Ga0068858_100001709 Ga0068858_1000017094 348
37 3300006173 Ga0070716_100087938 Ga0070716_1000879382 348
38 3300009098 Ga0105245_10001983 Ga0105245_100019834 348
39 3300025936 Ga0207670_10000648 Ga0207670_1000064815 348
40 3300025939 Ga0207665_10071060 Ga0207665_100710602 348
41 3300026035 Ga0207703_10000646 Ga0207703_1000064631 348
42 3300026095 Ga0207676_10000023 Ga0207676_10000023212 348
43 3300031250 Ga0265331_10001541 Ga0265331_100015416 348
44 3300031251 Ga0265327_10000012 Ga0265327_1000001220 348
45 3300046460 Ga0495638_0001044 Ga0495638_0001044_4557_5609 349
46 3300048918 Ga0496115_0001721 Ga0496115_0001721_7413_8492 349
47 3300053153 Ga0500616_0010226 Ga0500616_0010226_284_1336 349
48 3300003759 Ga0055525_1000021 Ga0055525_1000021202 350
49 3300025230 Ga0209563_100005 Ga0209563_100005125 350
50 3300025913 Ga0207695_10119486 Ga0207695_101194863 350
51 3300047320 Ga0495672_0035241 Ga0495672_0035241_1415_2482 350
52 3300049571 Ga0501034_0001165 Ga0501034_0001165_16850_17941 351
53 3300049574 Ga0501038_0121996 Ga0501038_0121996_393_1484 351
54 3300044694 Ga0466963_0000221 Ga0466963_0000221_7921_8997 352
55 3300045976 Ga0466967_0012345 Ga0466967_0012345_3080_4156 352
56 3300005336 Ga0070680_100025371 Ga0070680_1000253713 353
57 3300005530 Ga0070679_100014235 Ga0070679_1000142355 353
58 3300025917 Ga0207660_10001811 Ga0207660_100018118 353
59 3300025921 Ga0207652_10001300 Ga0207652_1000130019 353
60 3300031691 Ga0316579_10028099 Ga0316579_100280992 353
61 3300032137 Ga0316585_10023894 Ga0316585_100238941 353
62 3300032139 Ga0316580_10021575 Ga0316580_100215752 353
63 3300035398 Ga0316574_0212974 Ga0316574_0212974_108_1181 353
64 3300036712 Ga0316584_0016949 Ga0316584_0016949_15_1088 353
65 3300044712 Ga0453684_0305675 Ga0453684_0305675_85_1176 353
66 iso_pu_bacteria 2512564013 2512638181 353
67 iso_pu_bacteria 2915597211 2915600327 353
68 iso_pu_bacteria 2929183550 2929185508 353
69 3300005466 Ga0070685_10041746 Ga0070685_100417461 354
70 3300006880 Ga0075429_100082795 Ga0075429_1000827952 354
71 3300009147 Ga0114129_10001578 Ga0114129_100015788 354
72 3300026116 Ga0207674_10414814 Ga0207674_104148141 354
73 3300031507 Ga0307509_10258864 Ga0307509_102588642 354
74 3300046460 Ga0495638_0205842 Ga0495638_0205842_10_1083 354
75 3300046513 Ga0495616_0001065 Ga0495616_0001065_7850_8923 354
76 3300046519 Ga0495632_0049067 Ga0495632_0049067_960_2033 354
77 3300046660 Ga0495625_0045556 Ga0495625_0045556_1017_2090 354
78 3300046694 Ga0495649_0105138 Ga0495649_0105138_315_1388 354
79 3300049584 Ga0501068_0000404 Ga0501068_0000404_5366_6439 354
80 3300049586 Ga0501070_0132880 Ga0501070_0132880_40_1113 354
81 3300049587 Ga0501071_0002423 Ga0501071_0002423_392_1465 354
82 3300049589 Ga0501073_0003831 Ga0501073_0003831_4786_5859 354
83 3300049590 Ga0501074_0000758 Ga0501074_0000758_13651_14724 354
84 3300049592 Ga0501076_0075099 Ga0501076_0075099_945_2018 354
85 3300049593 Ga0501077_0020449 Ga0501077_0020449_2133_3206 354
86 3300049741 Ga0501079_0000576 Ga0501079_0000576_17846_18919 354
87 3300049742 Ga0501080_0014459 Ga0501080_0014459_5521_6594 354
88 3300050507 nmdc:mga05p37_658_c1 nmdc:mga05p37_658_c1_7591_8673 354
89 3300050508 nmdc:mga09592_77216_c1 nmdc:mga09592_77216_c1_1412_2494 354
90 3300050510 nmdc:mga06r32_373398_c1 nmdc:mga06r32_373398_c1_228_1310 354
91 3300054114 Ga0501084_0004339 Ga0501084_0004339_5576_6649 354
92 3300005262 Ga0065165_1000026 Ga0065165_1000026144 355
93 3300025284 Ga0209130_1000150 Ga0209130_100015014 355
94 3300025294 Ga0209025_1009742 Ga0209025_10097426 355
95 3300026075 Ga0207708_10203982 Ga0207708_102039822 355
96 3300031456 Ga0307513_10127431 Ga0307513_101274313 355
97 3300042115 Ga0450911_000168 Ga0450911_000168_15275_16354 355
98 3300042876 Ga0451577_0000869 Ga0451577_0000869_22878_23957 355
99 3300044712 Ga0453684_0482393 Ga0453684_0482393_110_1189 355
100 3300048927 Ga0496124_0028679 Ga0496124_0028679_91_1170 355
101 3300048928 Ga0496125_0006720 Ga0496125_0006720_7800_8888 355
102 3300048928 Ga0496125_0021749 Ga0496125_0021749_1346_2425 355
103 3300053117 Ga0500593_067184 Ga0500593_067184_148_1227 355
104 3300005468 Ga0070707_100295456 Ga0070707_1002954562 356
105 3300006844 Ga0075428_100164469 Ga0075428_1001644693 356
106 3300006846 Ga0075430_100003424 Ga0075430_10000342411 356
107 3300006847 Ga0075431_100000364 Ga0075431_10000036417 356
108 3300006880 Ga0075429_100146553 Ga0075429_1001465532 356
109 3300025922 Ga0207646_10102680 Ga0207646_101026802 356
110 3300050509 nmdc:mga0qj67_26674_c1 nmdc:mga0qj67_26674_c1_2080_3165 356
111 3300050510 nmdc:mga06r32_2236_c1 nmdc:mga06r32_2236_c1_9106_10191 356
112 3300028800 Ga0265338_10000200 Ga0265338_1000020032 357
113 3300021384 Ga0213876_10021896 Ga0213876_100218963 358
114 3300039437 Ga0436365_1174468 Ga0436365_1174468_14259_15374 358
115 3300048924 Ga0496121_0002612 Ga0496121_0002612_17064_18152 358
116 3300003322 rootL2_10098614 rootL2_100986141 362
117 3300009147 Ga0114129_10053859 Ga0114129_100538592 362
118 3300013104 Ga0157370_10000885 Ga0157370_1000088515 362
119 3300025254 Ga0209148_1000425 Ga0209148_100042515 362
120 3300025272 Ga0209455_1000468 Ga0209455_100046823 362
121 3300032004 Ga0307414_10002024 Ga0307414_100020244 362
122 3300037853 Ga0436364_0049513 Ga0436364_0049513_7532_8644 362
123 3300046453 Ga0495627_000002 Ga0495627_000002_836561_837676 362
124 3300046525 Ga0495663_0000877 Ga0495663_0000877_1373_2488 362
125 3300046530 Ga0495654_0000006 Ga0495654_0000006_143410_144525 362
126 3300047472 Ga0495686_0016110 Ga0495686_0016110_337_1452 362
127 3300050507 nmdc:mga05p37_52313_c1 nmdc:mga05p37_52313_c1_3763_4878 362
128 3300053096 Ga0500641_0000062 Ga0500641_0000062_24617_25741 362
129 3300013100 Ga0157373_10000248 Ga0157373_1000024827 363
130 3300031240 Ga0265320_10004192 Ga0265320_100041926 363
131 3300048912 Ga0496109_0346182 Ga0496109_0346182_21_1130 363
132 3300049571 Ga0501034_0018845 Ga0501034_0018845_1251_2360 363
133 3300005563 Ga0068855_100025428 Ga0068855_1000254286 364
134 3300025949 Ga0207667_10163330 Ga0207667_101633302 364
135 3300029957 Ga0265324_10008818 Ga0265324_100088182 364
136 3300031711 Ga0265314_10079789 Ga0265314_100797892 364
137 3300034816 Ga0373930_0000202 Ga0373930_0000202_1660_2754 364
138 3300034818 Ga0373950_0003296 Ga0373950_0003296_764_1858 364
139 3300035084 Ga0373928_0000136 Ga0373928_0000136_6520_7614 364
140 3300035085 Ga0373929_0000121 Ga0373929_0000121_8156_9250 364
141 3300035089 Ga0373944_0006931 Ga0373944_0006931_1660_2754 364
142 3300035090 Ga0373949_0003810 Ga0373949_0003810_646_1740 364
143 3300035091 Ga0373951_0002879 Ga0373951_0002879_608_1702 364
144 3300035112 Ga0373932_0000001 Ga0373932_0000001_1234680_1235774 364
145 3300035242 Ga0373962_0000013 Ga0373962_0000013_36214_37308 364
146 3300035691 Ga0373931_0000002 Ga0373931_0000002_259624_260718 364
147 3300035695 Ga0373927_0002052 Ga0373927_0002052_3742_4836 364
148 3300037068 Ga0373925_0002062 Ga0373925_0002062_14055_15149 364
149 3300025936 Ga0207670_10007076 Ga0207670_100070762 365
150 3300028556 Ga0265337_1007115 Ga0265337_10071152 365
151 3300029957 Ga0265324_10000259 Ga0265324_100002599 365
152 3300031240 Ga0265320_10084440 Ga0265320_100844402 365
153 3300031344 Ga0265316_10108925 Ga0265316_101089252 365
154 3300049570 Ga0501033_0000058 Ga0501033_0000058_51785_53047 365
155 3300049574 Ga0501038_0009970 Ga0501038_0009970_4902_6164 365
156 iso_pu_bacteria 2643221560 2643823407 365
157 3300005843 Ga0068860_100001302 Ga0068860_10000130231 366
158 3300006028 Ga0070717_10000058 Ga0070717_100000588 366
159 3300028381 Ga0268264_10029525 Ga0268264_100295253 366
160 3300049822 Ga0501035_0123636 Ga0501035_0123636_568_1689 366
161 3300003322 rootL2_10041873 rootL2_100418733 367
162 3300006358 Ga0068871_100029965 Ga0068871_1000299653 367
163 3300028556 Ga0265337_1004736 Ga0265337_10047362 367
164 3300028558 Ga0265326_10020699 Ga0265326_100206992 367
165 3300028800 Ga0265338_10000263 Ga0265338_1000026328 367
166 3300028800 Ga0265338_10123514 Ga0265338_101235142 367
167 3300031240 Ga0265320_10010178 Ga0265320_100101784 367
168 3300031251 Ga0265327_10004079 Ga0265327_100040797 367
169 3300003323 rootH1_10300848 rootH1_103008482 368
170 3300031507 Ga0307509_10112451 Ga0307509_101124512 368
171 3300035695 Ga0373927_0063366 Ga0373927_0063366_141_1307 368
172 3300037471 Ga0395905_0000036 Ga0395905_0000036_91410_92516 368
173 3300006175 Ga0070712_100094964 Ga0070712_1000949642 370
174 3300006881 Ga0068865_100149827 Ga0068865_1001498272 370
175 3300025915 Ga0207693_10033527 Ga0207693_100335272 370
176 3300037068 Ga0373925_0259382 Ga0373925_0259382_72_1331 370
177 3300046473 Ga0495582_0023536 Ga0495582_0023536_1178_2431 370
178 3300046514 Ga0495618_0045978 Ga0495618_0045978_269_1480 370
179 3300046531 Ga0495665_0072457 Ga0495665_0072457_17_1276 370
180 3300046663 Ga0495635_0030248 Ga0495635_0030248_1975_3234 370
181 3300046675 Ga0495657_0107650 Ga0495657_0107650_78_1337 370
182 3300046690 Ga0495624_0023592 Ga0495624_0023592_1262_2521 370
183 3300047317 Ga0495604_0062338 Ga0495604_0062338_378_1589 370
184 3300047321 Ga0495676_0040243 Ga0495676_0040243_2319_3572 370
185 3300053077 Ga0495601_0171001 Ga0495601_0171001_86_1339 370
186 3300003320 rootH2_10003585 rootH2_1000358521 371
187 3300005334 Ga0068869_100052577 Ga0068869_1000525772 371
188 3300005338 Ga0068868_100005261 Ga0068868_1000052615 371
189 3300026023 Ga0207677_10002693 Ga0207677_100026935 371
190 3300039437 Ga0436365_0338121 Ga0436365_0338121_55_1263 371

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

38

275

0.89

PF04321

RmlD_sub_bind

RmlD substrate binding domain

36

203

0.85

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

39

359

0.76

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

38

264

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wvg-assembly1.cif.gz_A-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.9592 1 359
1rkx-assembly1.cif.gz_D crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9557 4 352
1wvg-assembly1.cif.gz_A-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.9539 1 359
1rkx-assembly1.cif.gz_B crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.951 4 352
1wvg-assembly1.cif.gz_B-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.9487 1 352
ID Description Score Start End Superfamily
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9696 4 189 3.40.50.720
1wvgA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9393 191 359 3.90.25.10
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9349 4 189 3.40.50.720
1wvgA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9279 191 359 3.90.25.10
1rkxC02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9271 191 357 3.90.25.10
ID Description Score Start End GO Terms
AF-A0A751YIE8-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9913 4 121
AF-A0A7K4B2M0-F1-model_v4 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) 0.9816 1 231 GO:0047733
AF-A0A2D5KCR8-F1-model_v4 CDP-glucose 4,6-dehydratase 0.9814 1 357
AF-A0A1F9VDU5-F1-model_v4 CDP-glucose 4,6-dehydratase 0.9802 4 208
AF-A0A7W1YJK2-F1-model_v4 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) 0.9796 6 200 GO:0047733

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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