F293085

General Info

Members Datasets Scaffolds Average Seq Length
190 132 136 227

Family's Representative Sequence

Representative Sequence 3300048921|Ga0496118_0030336|Ga0496118_0030336_1531_2295
Length 254
Sequence LGQQQGRDWNGDPFCLKKIPGGHLGMSRILIVEDEVSIAELEKDYLELSGFEVEIENNGKEGLALALREDFDLLILDLMLPGIDGFEICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYERLIGSGTPDNEIVEIRGLKIDRTARRVWINGEEKNFTTKEFDLLTFLAQNPNHVYTKEELFNKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFKV

Samples

Sample ID Description Type Environment
1 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
2 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
3 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
4 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
5 2643221731 Bacillus sp. Root147 Isolate Unclassified
6 2643221732 Bacillus sp. Root239 Isolate Unclassified
7 2671180694 Paenibacillus sp. A3 Isolate Unclassified
8 2738543017 Bacillus sp. OV186 Isolate Unclassified
9 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
10 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
11 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
12 2818991465 Priestia megaterium 3291 Isolate Rhizosphere
13 2842882022 Bacillus sp. R-71893 Isolate Unclassified
14 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
15 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
16 2857472729 Cohnella sp. R-74144 Isolate Unclassified
17 2857586860 Bacillus sp. R-71935 Isolate Unclassified
18 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
19 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
20 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
21 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
22 2898907183 Brevibacillus sp. SYP-B805 Isolate Rhizosphere
23 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
24 2904524088 Priestia megaterium 1428 Isolate Rhizosphere
25 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
26 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
27 2916971899 Alkalihalobacillus miscanthi AK13 Isolate Rhizosphere
28 2919143609 Priestia megaterium 1751 Isolate Rhizosphere
29 2919517244 Priestia aryabhattai 3820 Isolate Unclassified
30 2919720352 Priestia megaterium 4340 Isolate Unclassified
31 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
32 2928093941 Priestia aryabhattai 1389 Isolate Rhizosphere
33 2929004312 Priestia megaterium 1104 Isolate Unclassified
34 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
35 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
36 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
37 2960319331 Priestia megaterium AFS057444 Isolate Unclassified
38 2960375949 Priestia megaterium AFS067084 Isolate Unclassified
39 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
40 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
41 3006973921 Bacillus sp. FJAT-49736 Isolate Rhizosphere
42 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
43 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
44 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
45 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
46 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
47 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
48 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
49 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
50 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
51 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
54 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
55 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
58 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
66 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
70 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
71 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
72 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
73 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
76 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
77 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
78 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
79 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
80 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
86 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
87 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
88 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
89 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
90 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
91 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
92 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
93 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
94 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
95 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
98 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
99 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
100 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
101 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
102 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
103 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
104 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
105 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
106 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
107 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
110 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
111 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
112 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049131 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300049132 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
116 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
118 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300049546 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_B_4_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
121 3300049547 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_A_5_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300049549 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
123 3300049551 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
124 3300049554 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_A_7_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
126 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
127 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified
129 8022893055 Bacillus aryabhattai AFS007213 Isolate Unclassified
130 8022914991 Bacillus aryabhattai SQU-R12 Isolate Unclassified
131 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
132 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 63.16
Metatranscriptomes 8.42
Isolates 28.42

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.32
Nodule 0
Rhizoplane 7.89
Rhizosphere 40
Stem 0
Stem Tuber 0
Unclassified 35.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000173 3300003187 Bacteria 83223
2 JGI25151J46595_10000393 3300003187 Bacteria 45469
3 JGI25151J46595_10002486 3300003187 Bacteria 11031
4 JGI25151J46595_10007786 3300003187 Bacteria 5212
5 rootH1_10023913 3300003316 Bacteria 64484
6 rootL2_10112120 3300003322 Bacteria 6377
7 rootH1_10284573 3300003323 Bacteria 1309
8 Ga0006562J51391_1026541 3300003578 Bacteria 1280
9 Ga0055532_1000201 3300003758 Bacteria 48883
10 Ga0055532_1000222 3300003758 Bacteria 43041
11 Ga0055532_1000648 3300003758 Bacteria 13405
12 Ga0055536_1010607 3300003781 Bacteria 3633
13 Ga0055528_1005055 3300003790 Bacteria 6229
14 Ga0055541_1008599 3300003841 Bacteria 1618
15 Ga0070675_100683500 3300005354 Bacteria 934
16 Ga0105251_10156298 3300009011 Bacteria 1029
17 Ga0105244_10149245 3300009036 Bacteria 1121
18 Ga0105244_10150528 3300009036 Bacteria 1115
19 Ga0105250_10171042 3300009092 Bacteria 909
20 Ga0105242_10306243 3300009176 Bacteria 1452
21 Ga0157374_10221297 3300013296 Bacteria 1857
22 Ga0157378_10599695 3300013297 Bacteria 1112
23 Ga0209784_101694 3300025224 Bacteria 2663
24 Ga0209566_100072 3300025225 Bacteria 167764
25 Ga0209566_100174 3300025225 Bacteria 70319
26 Ga0209566_101535 3300025225 Bacteria 6298
27 Ga0209147_100057 3300025229 Bacteria 253870
28 Ga0209147_100160 3300025229 Bacteria 90883
29 Ga0209147_100185 3300025229 Bacteria 74400
30 Ga0209147_100583 3300025229 Bacteria 20327
31 Ga0209147_104187 3300025229 Bacteria 2481
32 Ga0209673_1005525 3300025273 Bacteria 6327
33 Ga0209675_1029761 3300025291 Bacteria 1311
34 Ga0209676_1001640 3300025292 Bacteria 19667
35 Ga0209025_1000107 3300025294 Bacteria 222387
36 Ga0209025_1000266 3300025294 Bacteria 122782
37 Ga0209025_1001566 3300025294 Bacteria 28986
38 Ga0209025_1003833 3300025294 Bacteria 13692
39 Ga0209025_1004283 3300025294 Bacteria 12519
40 Ga0209025_1034428 3300025294 Bacteria 2312
41 Ga0209025_1063854 3300025294 Bacteria 1356
42 Ga0209025_1070710 3300025294 Bacteria 1241
43 Ga0207426_1085520 3300025302 Bacteria 846
44 Ga0207696_1002663 3300025711 Bacteria 8582
45 Ga0207713_1005309 3300025735 Bacteria 8104
46 Ga0307408_100060715 3300031548 Bacteria 2757
47 Ga0307409_100003780 3300031995 Bacteria 8333
48 Ga0307416_100018497 3300032002 Bacteria 4909
49 Ga0316593_10012247 3300032168 Bacteria 2514
50 Ga0316596_1094390 3300033541 Bacteria 807
51 Ga0395899_0203619 3300037312 Bacteria 1378
52 Ga0395900_0520250 3300037418 Bacteria 1138
53 Ga0395900_1078145 3300037418 Bacteria 721
54 Ga0395898_0808387 3300037466 Bacteria 878
55 Ga0439433_0025658 3300041999 Bacteria 1332
56 Ga0439449_0000071 3300042007 Bacteria 32033
57 Ga0439449_0016050 3300042007 Bacteria 2816
58 Ga0439457_004475 3300042014 Bacteria 3634
59 Ga0439462_0005601 3300042015 Bacteria 3100
60 Ga0439462_0012024 3300042015 Bacteria 2208
61 Ga0466969_0011177 3300044656 Bacteria 4753
62 Ga0466969_0022234 3300044656 Bacteria 3275
63 Ga0466969_0211758 3300044656 Bacteria 883
64 Ga0466961_0012126 3300044693 Bacteria 5512
65 Ga0466970_0424756 3300044765 Bacteria 760
66 Ga0466959_0012943 3300045049 Bacteria 6039
67 Ga0466959_0020133 3300045049 Bacteria 4912
68 Ga0451576_0229662 3300045051 Bacteria 1938
69 Ga0495603_0210223 3300046455 Bacteria 1123
70 Ga0495585_0021214 3300046492 Bacteria 3732
71 Ga0495607_0146147 3300046501 Bacteria 1215
72 Ga0495654_0089340 3300046530 Bacteria 1432
73 Ga0495622_0025102 3300046557 Bacteria 2784
74 Ga0495649_0039511 3300046694 Bacteria 2587
75 Ga0495676_0134986 3300047321 Bacteria 1776
76 Ga0495676_0257659 3300047321 Bacteria 1188
77 Ga0495683_0054268 3300047323 Bacteria 1998
78 Ga0495626_0047804 3300048091 Bacteria 1988
79 Ga0496100_0090791 3300048903 Bacteria 2083
80 Ga0496101_0007033 3300048904 Bacteria 7272
81 Ga0496102_0048209 3300048905 Bacteria 3873
82 Ga0496102_0075881 3300048905 Bacteria 3090
83 Ga0496104_0007768 3300048907 Bacteria 9502
84 Ga0496105_0001108 3300048908 Bacteria 18742
85 Ga0496105_0024402 3300048908 Bacteria 4912
86 Ga0496106_0004038 3300048909 Bacteria 10962
87 Ga0496107_0000102 3300048910 Bacteria 41673
88 Ga0496108_0002060 3300048911 Bacteria 16106
89 Ga0496109_0004305 3300048912 Bacteria 11887
90 Ga0496110_0038749 3300048913 Bacteria 4148
91 Ga0496111_0006723 3300048914 Bacteria 7485
92 Ga0496116_0002141 3300048919 Bacteria 21021
93 Ga0496116_0008268 3300048919 Bacteria 9051
94 Ga0496116_0024237 3300048919 Bacteria 4492
95 Ga0496117_0000917 3300048920 Bacteria 45092
96 Ga0496118_0030336 3300048921 Bacteria 4515
97 Ga0496119_0001012 3300048922 Bacteria 35976
98 Ga0496119_0009963 3300048922 Bacteria 8057
99 Ga0496119_0015449 3300048922 Bacteria 5876
100 Ga0496119_0020582 3300048922 Bacteria 4806
101 Ga0496119_0276318 3300048922 Bacteria 837
102 Ga0496120_0000003 3300048923 Bacteria 538703
103 Ga0496120_0000788 3300048923 Bacteria 45696
104 Ga0496120_0000857 3300048923 Bacteria 43039
105 Ga0496120_0004861 3300048923 Bacteria 10980
106 Ga0496122_0000006 3300048925 Bacteria 625811
107 Ga0496122_0000198 3300048925 Bacteria 135710
108 Ga0496122_0003600 3300048925 Bacteria 20191
109 Ga0496122_0008236 3300048925 Bacteria 11316
110 Ga0496122_0013039 3300048925 Bacteria 8187
111 Ga0496122_0181259 3300048925 Bacteria 1256
112 Ga0496122_0231454 3300048925 Bacteria 1050
113 Ga0496123_0000182 3300048926 Bacteria 126748
114 Ga0496123_0050041 3300048926 Bacteria 2795
115 Ga0496125_0000027 3300048928 Bacteria 397211
116 Ga0496125_0051514 3300048928 Bacteria 3394
117 Ga0496126_0000016 3300048929 Bacteria 625843
118 Ga0496126_0000182 3300048929 Bacteria 140941
119 Ga0496126_0006165 3300048929 Bacteria 13420
120 Ga0496126_0008776 3300048929 Bacteria 10850
121 Ga0496126_0022053 3300048929 Bacteria 6204
122 Ga0501341_05388 3300049131 Bacteria 765
123 Ga0501343_002185 3300049132 Bacteria 1384
124 Ga0501305_041249 3300049161 Bacteria 751
125 Ga0501312_026118 3300049528 Bacteria 894
126 Ga0501317_026858 3300049533 Bacteria 815
127 Ga0501318_003057 3300049534 Bacteria 1506
128 Ga0501318_027651 3300049534 Bacteria 755
129 Ga0501330_006785 3300049546 Bacteria 756
130 Ga0501331_03436 3300049547 Bacteria 851
131 Ga0501333_005193 3300049549 Bacteria 838
132 Ga0501335_015570 3300049551 Bacteria 777
133 Ga0501338_05629 3300049554 Bacteria 779
134 Ga0501227_063817 3300049665 Bacteria 948
135 Ga0501234_023703 3300049707 Bacteria 983
136 Ga0587090_006849 3300059510 Unclassified 1479

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048908 Ga0496105_0024402 Ga0496105_0024402_2425_3120 202
2 3300044765 Ga0466970_0424756 Ga0466970_0424756_43_657 204
3 iso_pu_bacteria 2857591370 2857594419 209
4 3300044656 Ga0466969_0211758 Ga0466969_0211758_51_743 212
5 3300046501 Ga0495607_0146147 Ga0495607_0146147_444_1133 213
6 3300059510 Ga0587090_006849 Ga0587090_006849_711_1448 222
7 iso_pu_bacteria 2643221731 2644717686 223
8 iso_pu_bacteria 2643221732 2644726977 223
9 iso_pu_bacteria 2818991465 2819706771 223
10 iso_pu_bacteria 2842882022 2842882838 223
11 iso_pu_bacteria 2904524088 2904526492 223
12 iso_pu_bacteria 2919143609 2919144910 223
13 iso_pu_bacteria 2919517244 2919520104 223
14 iso_pu_bacteria 2919720352 2919721235 223
15 iso_pu_bacteria 2928093941 2928095013 223
16 iso_pu_bacteria 2929004312 2929008375 223
17 iso_pu_bacteria 2960319331 2960320919 223
18 iso_pu_bacteria 2960375949 2960376475 223
19 iso_pu_bacteria 2980182181 2980184091 223
20 iso_pu_bacteria 8022893055 8022894873 223
21 iso_pu_bacteria 8022914991 8022919306 223
22 3300044656 Ga0466969_0022234 Ga0466969_0022234_178_861 224
23 3300045049 Ga0466959_0020133 Ga0466959_0020133_2900_3583 224
24 iso_pu_bacteria 2512564039 2512729868 224
25 iso_pu_bacteria 2585428059 2587741365 224
26 iso_pu_bacteria 2593339131 2595087960 224
27 iso_pu_bacteria 2593339131 2595088389 224
28 iso_pu_bacteria 2593339198 2595320678 224
29 iso_pu_bacteria 2671180694 2673818049 224
30 iso_pu_bacteria 2738543017 2739267997 224
31 iso_pu_bacteria 2757320391 2757565505 224
32 iso_pu_bacteria 2757320391 2757565930 224
33 iso_pu_bacteria 2775507177 2777761205 224
34 iso_pu_bacteria 2775507177 2777762286 224
35 iso_pu_bacteria 2775507192 2777836994 224
36 iso_pu_bacteria 2775507192 2777839438 224
37 iso_pu_bacteria 2857465823 2857472657 224
38 iso_pu_bacteria 2857472729 2857477160 224
39 iso_pu_bacteria 2857472729 2857478602 224
40 iso_pu_bacteria 2857586860 2857587109 224
41 iso_pu_bacteria 2865002811 2865004103 224
42 iso_pu_bacteria 2888578766 2888580296 224
43 iso_pu_bacteria 2889049205 2889054641 224
44 iso_pu_bacteria 2898907183 2898911248 224
45 iso_pu_bacteria 2904113452 2904115133 224
46 iso_pu_bacteria 2904755435 2904761280 224
47 iso_pu_bacteria 2915606848 2915608264 224
48 iso_pu_bacteria 2916971899 2916972398 224
49 iso_pu_bacteria 2925326138 2925328853 224
50 iso_pu_bacteria 2929206907 2929209174 224
51 iso_pu_bacteria 2936340661 2936341755 224
52 iso_pu_bacteria 2936340661 2936343205 224
53 iso_pu_bacteria 2936361878 2936365745 224
54 iso_pu_bacteria 3001892409 3001895935 224
55 iso_pu_bacteria 3001892409 3001898407 224
56 iso_pu_bacteria 3006973921 3006975394 224
57 iso_pu_bacteria 8007375930 8007376806 224
58 iso_pu_bacteria 2857460504 2857461882 225
59 3300003187 JGI25151J46595_10007786 JGI25151J46595_100077866 227
60 3300003316 rootH1_10023913 rootH1_1002391367 227
61 3300003322 rootL2_10112120 rootL2_101121203 227
62 3300003323 rootH1_10284573 rootH1_102845731 227
63 3300003578 Ga0006562J51391_1026541 Ga0006562J51391_10265412 227
64 3300003790 Ga0055528_1005055 Ga0055528_10050552 227
65 3300005354 Ga0070675_100683500 Ga0070675_1006835002 227
66 3300009011 Ga0105251_10156298 Ga0105251_101562982 227
67 3300009036 Ga0105244_10149245 Ga0105244_101492451 227
68 3300009092 Ga0105250_10171042 Ga0105250_101710422 227
69 3300009176 Ga0105242_10306243 Ga0105242_103062432 227
70 3300013296 Ga0157374_10221297 Ga0157374_102212972 227
71 3300013297 Ga0157378_10599695 Ga0157378_105996951 227
72 3300025229 Ga0209147_100583 Ga0209147_1005838 227
73 3300025273 Ga0209673_1005525 Ga0209673_10055251 227
74 3300025294 Ga0209025_1004283 Ga0209025_10042839 227
75 3300025294 Ga0209025_1034428 Ga0209025_10344282 227
76 3300025302 Ga0207426_1085520 Ga0207426_10855202 227
77 3300025711 Ga0207696_1002663 Ga0207696_10026632 227
78 3300025735 Ga0207713_1005309 Ga0207713_10053097 227
79 3300031995 Ga0307409_100003780 Ga0307409_1000037802 227
80 3300032002 Ga0307416_100018497 Ga0307416_1000184972 227
81 3300046455 Ga0495603_0210223 Ga0495603_0210223_13_696 227
82 3300046492 Ga0495585_0021214 Ga0495585_0021214_2693_3376 227
83 3300047321 Ga0495676_0134986 Ga0495676_0134986_1008_1691 227
84 3300047323 Ga0495683_0054268 Ga0495683_0054268_61_744 227
85 3300048903 Ga0496100_0090791 Ga0496100_0090791_911_1594 227
86 3300048904 Ga0496101_0007033 Ga0496101_0007033_5568_6251 227
87 3300048905 Ga0496102_0075881 Ga0496102_0075881_1173_1856 227
88 3300048907 Ga0496104_0007768 Ga0496104_0007768_3248_3931 227
89 3300048908 Ga0496105_0001108 Ga0496105_0001108_16149_16832 227
90 3300048909 Ga0496106_0004038 Ga0496106_0004038_9662_10345 227
91 3300048910 Ga0496107_0000102 Ga0496107_0000102_10522_11205 227
92 3300048911 Ga0496108_0002060 Ga0496108_0002060_9196_9879 227
93 3300048912 Ga0496109_0004305 Ga0496109_0004305_5637_6320 227
94 3300048913 Ga0496110_0038749 Ga0496110_0038749_2444_3127 227
95 3300048914 Ga0496111_0006723 Ga0496111_0006723_5630_6313 227
96 3300048922 Ga0496119_0015449 Ga0496119_0015449_4044_4727 227
97 3300048925 Ga0496122_0008236 Ga0496122_0008236_7711_8394 227
98 3300048928 Ga0496125_0051514 Ga0496125_0051514_2373_3056 227
99 3300048929 Ga0496126_0008776 Ga0496126_0008776_4039_4722 227
100 3300049131 Ga0501341_05388 Ga0501341_05388_42_728 227
101 3300049132 Ga0501343_002185 Ga0501343_002185_659_1345 227
102 3300049161 Ga0501305_041249 Ga0501305_041249_53_739 227
103 3300049528 Ga0501312_026118 Ga0501312_026118_171_857 227
104 3300049533 Ga0501317_026858 Ga0501317_026858_90_776 227
105 3300049534 Ga0501318_003057 Ga0501318_003057_146_832 227
106 3300049534 Ga0501318_027651 Ga0501318_027651_57_743 227
107 3300049546 Ga0501330_006785 Ga0501330_006785_38_724 227
108 3300049547 Ga0501331_03436 Ga0501331_03436_127_813 227
109 3300049549 Ga0501333_005193 Ga0501333_005193_91_777 227
110 3300049551 Ga0501335_015570 Ga0501335_015570_53_739 227
111 3300049554 Ga0501338_05629 Ga0501338_05629_34_720 227
112 3300049665 Ga0501227_063817 Ga0501227_063817_94_780 227
113 3300049707 Ga0501234_023703 Ga0501234_023703_238_924 227
114 iso_pu_bacteria 2929206907 2929211630 227
115 iso_pu_bacteria 8046991243 8046997799 227
116 iso_pu_bacteria 8057977335 8057979737 227
117 3300003187 JGI25151J46595_10000393 JGI25151J46595_1000039325 228
118 3300003758 Ga0055532_1000201 Ga0055532_100020123 228
119 3300003758 Ga0055532_1000222 Ga0055532_100022211 228
120 3300003758 Ga0055532_1000648 Ga0055532_10006487 228
121 3300003841 Ga0055541_1008599 Ga0055541_10085993 228
122 3300009036 Ga0105244_10150528 Ga0105244_101505282 228
123 3300025224 Ga0209784_101694 Ga0209784_1016942 228
124 3300025225 Ga0209566_100072 Ga0209566_10007282 228
125 3300025225 Ga0209566_100174 Ga0209566_10017435 228
126 3300025225 Ga0209566_101535 Ga0209566_1015357 228
127 3300025229 Ga0209147_100057 Ga0209147_10005746 228
128 3300025229 Ga0209147_100160 Ga0209147_10016023 228
129 3300025229 Ga0209147_100185 Ga0209147_10018530 228
130 3300025229 Ga0209147_104187 Ga0209147_1041872 228
131 3300025291 Ga0209675_1029761 Ga0209675_10297611 228
132 3300025294 Ga0209025_1000107 Ga0209025_100010735 228
133 3300025294 Ga0209025_1003833 Ga0209025_10038339 228
134 3300025294 Ga0209025_1063854 Ga0209025_10638541 228
135 3300025294 Ga0209025_1070710 Ga0209025_10707102 228
136 3300032168 Ga0316593_10012247 Ga0316593_100122472 228
137 3300033541 Ga0316596_1094390 Ga0316596_10943902 228
138 3300037312 Ga0395899_0203619 Ga0395899_0203619_564_1256 228
139 3300037418 Ga0395900_0520250 Ga0395900_0520250_18_707 228
140 3300037418 Ga0395900_1078145 Ga0395900_1078145_22_711 228
141 3300037466 Ga0395898_0808387 Ga0395898_0808387_115_801 228
142 3300041999 Ga0439433_0025658 Ga0439433_0025658_175_861 228
143 3300042007 Ga0439449_0000071 Ga0439449_0000071_13620_14309 228
144 3300042007 Ga0439449_0016050 Ga0439449_0016050_1247_1933 228
145 3300042014 Ga0439457_004475 Ga0439457_004475_2381_3070 228
146 3300042015 Ga0439462_0005601 Ga0439462_0005601_540_1229 228
147 3300042015 Ga0439462_0012024 Ga0439462_0012024_812_1498 228
148 3300044656 Ga0466969_0011177 Ga0466969_0011177_1213_1902 228
149 3300044693 Ga0466961_0012126 Ga0466961_0012126_722_1411 228
150 3300045049 Ga0466959_0012943 Ga0466959_0012943_334_1023 228
151 3300045051 Ga0451576_0229662 Ga0451576_0229662_193_882 228
152 3300047321 Ga0495676_0257659 Ga0495676_0257659_65_751 228
153 3300048091 Ga0495626_0047804 Ga0495626_0047804_1151_1846 228
154 3300048905 Ga0496102_0048209 Ga0496102_0048209_1553_2239 228
155 3300048919 Ga0496116_0002141 Ga0496116_0002141_16244_16933 228
156 3300048919 Ga0496116_0008268 Ga0496116_0008268_4281_4970 228
157 3300048919 Ga0496116_0024237 Ga0496116_0024237_1258_1947 228
158 3300048920 Ga0496117_0000917 Ga0496117_0000917_19188_19877 228
159 3300048921 Ga0496118_0030336 Ga0496118_0030336_1531_2295 228
160 3300048922 Ga0496119_0001012 Ga0496119_0001012_32336_33025 228
161 3300048922 Ga0496119_0009963 Ga0496119_0009963_7215_7904 228
162 3300048922 Ga0496119_0020582 Ga0496119_0020582_2647_3336 228
163 3300048922 Ga0496119_0276318 Ga0496119_0276318_35_724 228
164 3300048923 Ga0496120_0000003 Ga0496120_0000003_232571_233260 228
165 3300048923 Ga0496120_0000788 Ga0496120_0000788_23235_23924 228
166 3300048923 Ga0496120_0000857 Ga0496120_0000857_19784_20473 228
167 3300048923 Ga0496120_0004861 Ga0496120_0004861_9882_10571 228
168 3300048925 Ga0496122_0000006 Ga0496122_0000006_233935_234624 228
169 3300048925 Ga0496122_0000198 Ga0496122_0000198_127080_127769 228
170 3300048925 Ga0496122_0003600 Ga0496122_0003600_6250_7014 228
171 3300048925 Ga0496122_0013039 Ga0496122_0013039_5369_6061 228
172 3300048925 Ga0496122_0181259 Ga0496122_0181259_94_795 228
173 3300048925 Ga0496122_0231454 Ga0496122_0231454_331_1020 228
174 3300048926 Ga0496123_0000182 Ga0496123_0000182_6250_7014 228
175 3300048926 Ga0496123_0050041 Ga0496123_0050041_1438_2127 228
176 3300048928 Ga0496125_0000027 Ga0496125_0000027_197958_198647 228
177 3300048929 Ga0496126_0000016 Ga0496126_0000016_233935_234624 228
178 3300048929 Ga0496126_0000182 Ga0496126_0000182_85044_85733 228
179 3300048929 Ga0496126_0006165 Ga0496126_0006165_7943_8632 228
180 3300048929 Ga0496126_0022053 Ga0496126_0022053_1524_2288 228
181 3300031548 Ga0307408_100060715 Ga0307408_1000607153 229
182 3300046530 Ga0495654_0089340 Ga0495654_0089340_426_1115 229
183 3300046557 Ga0495622_0025102 Ga0495622_0025102_1178_1867 229
184 3300046694 Ga0495649_0039511 Ga0495649_0039511_362_1051 229
185 3300003187 JGI25151J46595_10000173 JGI25151J46595_1000017364 230
186 3300003187 JGI25151J46595_10002486 JGI25151J46595_1000248610 230
187 3300003781 Ga0055536_1010607 Ga0055536_10106072 230
188 3300025292 Ga0209676_1001640 Ga0209676_100164020 230
189 3300025294 Ga0209025_1000266 Ga0209025_100026661 230
190 3300025294 Ga0209025_1001566 Ga0209025_10015665 230

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

29

138

0.99

PF00486

Trans_reg_C

Transcriptional regulatory protein, C terminal

176

252

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6is2-assembly1.cif.gz_A crystal structure of staphylococcus aureus response regulator arlr receiver domain in complex with mg 0.9833 2 118
1nxt-assembly1.cif.gz_A-2 micarec ph 4.0 0.98 2 118
8fk2-assembly1.cif.gz_B the n-terminal vicr from streptococcus mutans 0.9781 1 120
2a9r-assembly1.cif.gz_A-2 rr02-rec phosphate in the active site 0.9776 2 118
1zh4-assembly1.cif.gz_A crystal structure of the mg+2/bef3-bound receiver domain of kdp potassium transport system response regulator kdpe 0.9774 1 120
ID Description Score Start End Superfamily
af_Q9KJN4_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.99 1 80 3.40.50.2300
af_P76340_1_79_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9832 3 80 3.40.50.2300
af_Q9KJN4_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9779 1 80 3.40.50.2300
5hm6B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9762 1 118 3.40.50.2300
af_P69228_9_89_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9711 1 80 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7C3HKX2-F1-model_v4 Response regulator 0.9848 1 119 GO:0000160
GO:0003677
AF-A0A2J0QTN9-F1-model_v4 deleted 0.9823 1 84
AF-A0A358G4E9-F1-model_v4 deleted 0.9797 1 101
AF-A0A7Y4QL27-F1-model_v4 Response regulator 0.973 1 115 GO:0000160
AF-A0A2N3AJC3-F1-model_v4 Two-component system response regulator 0.9728 1 127 GO:0000160
GO:0005524
GO:0006355
GO:0016887

Feature Viewer

pLDDT pTM Quality
88.61 0.55 Medium
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Predicted Structure (AlphaFold2)

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