F293548

General Info

Members Datasets Scaffolds Average Seq Length
191 156 382 495

Family's Representative Sequence

Representative Sequence 3300005333|Ga0070677_10008735|Ga0070677_100087354
Length 530
Sequence MQSPPEPPTGAALPERVGPSSALHHDAEAALADVRNRYAASLALLRDRMRRFLGGETLAGRARAFYPRVAVVVDTVARADTPLAYGFVAGPGRYETTLTRPDLFGAYYLEQFRLLLRNHGVALEVSDSDTPIPVHFSFDEQEHLEVSMTPARQLLMRDLFDLPDLAATDDGIANGTHEPEPGPDGRPVHPLALFTAPRVDYSLHRLRHYTGTTPEHFQNFVVFTNYQFYIDEFIKLGHELMHTPRGQAPLFDDGTAPGAPDGDDEYVAFVEPGNLVMRRAGCTLEPGDFLGAPPPRMPQMPAYHLVRRDNAGITMVNIGVGPSNAKTITDHIAVLRPHAWIMLGHCAGLRTTQQLGDYVLAHGYVREDHVLDEELPPWVPIPPLAEVQLALEAAVAAVTHLERDELKRVMRTGTVASTDNRNWELLPFRHSATTPERRFSQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANHFYRERVNQHLRIGLRAIELLRRGGLDRLHSRKLRSFSEVAFQ

Samples

Sample ID Description Type Environment
1 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
2 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
6 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
7 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
10 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
17 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
24 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
25 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
26 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
28 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
29 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
31 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
33 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
37 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
41 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
42 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
48 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
49 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
50 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
51 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
52 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
53 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
54 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
55 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
56 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
57 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
58 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
59 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
60 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
61 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
62 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
63 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
64 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
65 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
66 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
67 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
68 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
69 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
73 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
80 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
83 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
84 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
85 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
87 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
88 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
89 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
90 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
91 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
92 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
93 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
94 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
95 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
96 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
97 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
98 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
99 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
100 2503198000 Mesorhizobium opportunistum WSM2075 Isolate Nodule
101 2508501123 Mesorhizobium sp. WSM3626 Isolate Nodule
102 2509276018 Mesorhizobium ciceri CMG6 Isolate Nodule
103 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
104 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
105 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
106 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
107 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
108 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
109 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
110 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
111 2643221660 Methylibium sp. Root1272 Isolate Unclassified
112 2738543024 Aminobacter sp. AP02 Isolate Unclassified
113 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
114 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
115 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
116 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
117 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
118 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
119 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
120 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
121 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
122 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
123 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
124 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
125 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
126 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
127 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
128 2847670302 Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 Isolate Nodule
129 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
130 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
131 2856314179 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Isolate Nodule
132 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
133 2869169390 Mesorhizobium sp. M7A.F.Ca.CA.001.10.2.1 Isolate Nodule
134 2871444079 Mesorhizobium sp. M1A.F.Ca.IN.020.06.1.1 Isolate Nodule
135 2878035449 Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 Isolate Nodule
136 2878781027 Mesorhizobium sp. M7A.F.Ca.CA.001.12.2.1 Isolate Nodule
137 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
138 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
139 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
140 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
141 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
142 2899803654 Agrobacterium sp. a22-2 Isolate Unclassified
143 2906414383 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Isolate Nodule
144 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
145 2924718760 Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 Isolate Nodule
146 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
147 2937877337 Mesorhizobium sp. M8A.F.Ca.ET.161.01.1.1 Isolate Nodule
148 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
149 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
150 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
151 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
152 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
153 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
154 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified
155 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
156 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 70.16
Metatranscriptomes 0
Isolates 29.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.85
Nodule 13.09
Rhizoplane 3.14
Rhizosphere 47.64
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070677_10008735 3300005333 Bacteria 3418
2 JGI25159J45721_1006648 3300002987 Bacteria 3425
3 JGI25151J46595_10000989 3300003187 Bacteria 21474
4 JGI25153J46596_10000095 3300003215 Bacteria 102154
5 JGI25160J50197_1012991 3300003354 Bacteria 2859
6 Ga0055536_1002940 3300003781 Bacteria 9358
7 Ga0055540_1000981 3300003792 Bacteria 18401
8 Ga0055531_10001123 3300003794 Bacteria 20718
9 Ga0055531_10008526 3300003794 Bacteria 5383
10 Ga0058692_1001113 3300003856 Bacteria 10425
11 Ga0058692_1001522 3300003856 Bacteria 8448
12 Ga0065165_1005508 3300005262 Bacteria 7079
13 Ga0070671_100095523 3300005355 Bacteria 2491
14 Ga0070662_100093646 3300005457 Bacteria 2260
15 Ga0068853_100165527 3300005539 Bacteria 1998
16 Ga0070672_100043900 3300005543 Bacteria 3451
17 Ga0070665_100011473 3300005548 Bacteria 8961
18 Ga0070665_100018231 3300005548 Bacteria 7042
19 Ga0070665_100030166 3300005548 Bacteria 5457
20 Ga0070665_100036758 3300005548 Bacteria 4925
21 Ga0068862_100002719 3300005844 Bacteria 15519
22 Ga0081540_1022925 3300005983 Bacteria 3670
23 Ga0075365_10011789 3300006038 Bacteria 5158
24 Ga0075368_10006877 3300006042 Bacteria 3999
25 Ga0075364_10013853 3300006051 Bacteria 4969
26 Ga0079104_1000010 3300006946 Bacteria 366021
27 Ga0105240_10062434 3300009093 Bacteria 4638
28 Ga0157371_10002849 3300013102 Bacteria 16156
29 Ga0214544_1000008 3300021320 Bacteria 326027
30 Ga0209130_1000325 3300025284 Bacteria 55752
31 Ga0209676_1002579 3300025292 Bacteria 12503
32 Ga0209025_1000261 3300025294 Bacteria 123705
33 Ga0209758_1000029 3300025297 Bacteria 520787
34 Ga0209758_1000121 3300025297 Bacteria 192028
35 Ga0209758_1002498 3300025297 Bacteria 18670
36 Ga0209050_1011309 3300025298 Bacteria 4255
37 Ga0207426_1000066 3300025302 Bacteria 351182
38 Ga0209051_1002337 3300025303 Bacteria 13740
39 Ga0209257_1001524 3300025304 Bacteria 27052
40 Ga0209257_1002142 3300025304 Bacteria 20550
41 Ga0207682_10005841 3300025893 Bacteria 4988
42 Ga0207706_10005534 3300025933 Bacteria 11776
43 Ga0207711_10023560 3300025941 Bacteria 5153
44 Ga0209281_1000053 3300027111 Bacteria 309587
45 Ga0209966_1000130 3300027695 Bacteria 32242
46 Ga0268266_10021103 3300028379 Bacteria 5550
47 Ga0268265_10053897 3300028380 Bacteria 3048
48 Ga0307517_10042353 3300028786 Bacteria 4886
49 Ga0265330_10003036 3300031235 Bacteria 8906
50 Ga0265330_10030196 3300031235 Bacteria 2435
51 Ga0265325_10051001 3300031241 Bacteria 2128
52 Ga0265327_10000622 3300031251 Bacteria 58359
53 Ga0265316_10000349 3300031344 Bacteria 51876
54 Ga0265316_10069482 3300031344 Bacteria 2718
55 Ga0307513_10107639 3300031456 Bacteria 2790
56 Ga0265314_10023461 3300031711 Bacteria 4703
57 Ga0307414_10034907 3300032004 Bacteria 3340
58 Ga0316582_0017698 3300036647 Bacteria 4130
59 Ga0395900_0001463 3300037418 Bacteria 28175
60 Ga0395900_0010764 3300037418 Bacteria 9357
61 Ga0395900_0219116 3300037418 Bacteria 1919
62 Ga0395898_0000466 3300037466 Bacteria 80988
63 Ga0395898_0192192 3300037466 Bacteria 1950
64 Ga0395905_0018714 3300037471 Bacteria 6570
65 Ga0395905_0127508 3300037471 Bacteria 2393
66 Ga0436361_0483826 3300039447 Bacteria 9339
67 Ga0436361_0658394 3300039447 Bacteria 19974
68 Ga0436361_1207479 3300039447 Bacteria 5525
69 Ga0466969_0000264 3300044656 Bacteria 28719
70 Ga0466966_0003189 3300044684 Bacteria 10797
71 Ga0466960_0010906 3300044901 Bacteria 3784
72 Ga0466959_0000886 3300045049 Bacteria 17631
73 Ga0466967_0015057 3300045976 Bacteria 6051
74 Ga0495610_0024084 3300046512 Bacteria 3291
75 Ga0495654_0001318 3300046530 Bacteria 17336
76 Ga0496111_0000448 3300048914 Bacteria 20939
77 Ga0496112_0004064 3300048915 Bacteria 12281
78 Ga0496117_0073648 3300048920 Bacteria 2278
79 Ga0496119_0021867 3300048922 Bacteria 4602
80 Ga0496121_0000001 3300048924 Bacteria 1830318
81 Ga0496121_0003369 3300048924 Bacteria 22908
82 Ga0496122_0000009 3300048925 Bacteria 584024
83 Ga0496122_0075486 3300048925 Bacteria 2377
84 Ga0496123_0000034 3300048926 Bacteria 274836
85 Ga0496124_0021355 3300048927 Bacteria 5967
86 Ga0496125_0000001 3300048928 Bacteria 1766138
87 Ga0501032_0003125 3300049569 Bacteria 12755
88 Ga0501033_0001611 3300049570 Bacteria 19830
89 Ga0501033_0066251 3300049570 Bacteria 2656
90 Ga0501034_0024272 3300049571 Bacteria 6167
91 Ga0501034_0053497 3300049571 Bacteria 4064
92 Ga0501036_0004370 3300049572 Bacteria 11406
93 Ga0501037_0053932 3300049573 Bacteria 2941
94 Ga0501038_0002001 3300049574 Bacteria 18799
95 Ga0501039_0001900 3300049575 Bacteria 15451
96 Ga0501043_0002220 3300049579 Bacteria 16566
97 Ga0501046_0000636 3300049580 Bacteria 34297
98 Ga0501047_0004957 3300049581 Bacteria 12500
99 Ga0501047_0040168 3300049581 Bacteria 4525
100 Ga0501047_0060086 3300049581 Bacteria 3669
101 Ga0501047_0120505 3300049581 Bacteria 2506
102 Ga0501067_0039784 3300049583 Bacteria 2611
103 Ga0501069_0004251 3300049585 Bacteria 7400
104 Ga0501070_0000208 3300049586 Bacteria 55386
105 Ga0501070_0252924 3300049586 Bacteria 1441
106 Ga0501073_0003007 3300049589 Bacteria 12631
107 Ga0501073_0030326 3300049589 Bacteria 3861
108 Ga0501080_0002359 3300049742 Bacteria 16458
109 Ga0501080_0139126 3300049742 Bacteria 2245
110 Ga0501083_0002202 3300049744 Bacteria 13325
111 Ga0501083_0004569 3300049744 Bacteria 9775
112 Ga0501035_0001370 3300049822 Bacteria 25073
113 Ga0501035_0008505 3300049822 Bacteria 9556
114 Ga0501044_0006334 3300049823 Bacteria 13086
115 Ga0501044_0011829 3300049823 Bacteria 9455
116 Ga0501044_0014507 3300049823 Bacteria 8500
117 Ga0501044_0023659 3300049823 Bacteria 6532
118 nmdc:mga00v17_3624_c1 3300050491 Bacteria 7980
119 Ga0500646_0015363 3300053090 Bacteria 1992
120 Ga0500641_0000599 3300053096 Bacteria 13004
121 Ga0500595_000349 3300053119 Bacteria 30121
122 Ga0500618_000272 3300053125 Bacteria 39600
123 Ga0500642_0005089 3300053130 Bacteria 4205
124 Ga0500642_0012835 3300053130 Bacteria 3055
125 Ga0500658_0025160 3300053134 Bacteria 2286
126 Ga0500568_0000114 3300053139 Bacteria 73279
127 Ga0500616_0000224 3300053153 Bacteria 88293
128 Ga0500616_0000883 3300053153 Bacteria 33047
129 Ga0500620_000102 3300053155 Bacteria 16797
130 Ga0500636_0000004 3300053177 Bacteria 202392
131 Ga0501084_0013899 3300054114 Bacteria 6664
132 Ga0501084_0104613 3300054114 Bacteria 2377
133 Ga0501082_0002591 3300060353 Bacteria 15811
134 Ga0501082_0011372 3300060353 Bacteria 7655
135 2503203414 2503198000 Bacteria 6884444
136 2509115832 2508501123 Bacteria 6283661
137 2509373283 2509276018 Bacteria 6910194
138 2511172985 2510917026 Bacteria 7046020
139 2514591716 2513237351 Bacteria 6968952
140 2523104879 2522572158 Bacteria 6514390
141 2585995014 2585427633 Bacteria 6413184
142 2585999556 2585427634 Bacteria 6455027
143 2599723171 2599185236 Bacteria 6875203
144 2600375192 2600254933 Bacteria 4750527
145 2644132804 2643221623 Bacteria 5239945
146 2644338041 2643221660 Bacteria 4208257
147 2739306569 2738543024 Bacteria 5603683
148 2757570705 2757320392 Bacteria 3737298
149 2765468362 2765235802 Bacteria 5618596
150 2770195058 2767802442 Bacteria 5747986
151 2793282825 2791355253 Bacteria 5171699
152 2819684234 2818991461 Bacteria 7026071
153 2821124169 2821123053 Bacteria 7836056
154 2821450779 2821443989 Bacteria 7658172
155 2837653350 2837651117 Bacteria 3772164
156 2838738808 2838736955 Bacteria 5760694
157 2840765893 2840764183 Bacteria 6358399
158 2841842707 2841840854 Bacteria 5761912
159 2841847434 2841846520 Bacteria 5345850
160 2842126536 2842124991 Bacteria 5346824
161 2842142487 2842140634 Bacteria 5759631
162 2844533991 2844533157 Bacteria 7517899
163 2847671940 2847670302 Bacteria 6165597
164 2854898799 2854896431 Bacteria 5869725
165 2854921620 2854916844 Bacteria 5725939
166 2856318330 2856314179 Bacteria 6477897
167 2857531748 2857531043 Bacteria 6754041
168 2869172783 2869169390 Bacteria 6659796
169 2871449639 2871444079 Bacteria 6423508
170 2878037667 2878035449 Bacteria 6555736
171 2878783175 2878781027 Bacteria 6834456
172 2881413574 2881412998 Bacteria 6492157
173 2887376352 2887375801 Bacteria 5334027
174 2889793900 2889790730 Bacteria 5689708
175 2889916882 2889914905 Bacteria 5702301
176 2891051950 2891048133 Bacteria 4447501
177 2899803689 2899803654 Bacteria 5577784
178 2906418367 2906414383 Bacteria 6580790
179 2919171528 2919171160 Bacteria 6499771
180 2924719674 2924718760 Bacteria 6331356
181 2929139348 2929138655 Bacteria 5810547
182 2937882727 2937877337 Bacteria 7246526
183 2939634138 2939631187 Bacteria 6118131
184 2995394971 2995392953 Bacteria 4539380
185 2996313214 2996310559 Bacteria 6357320
186 2996340221 2996336353 Bacteria 5511628
187 8002287924 8002285264 Bacteria 6717907
188 8002392445 8002392321 Bacteria 4159911
189 8048747640 8048746797 Bacteria 3557226
190 8054461810 8054460903 Bacteria 4872905
191 8056880043 8056875544 Bacteria 4355797
192 Ga0070677_10008735
193 JGI25159J45721_1006648
194 JGI25151J46595_10000989
195 JGI25153J46596_10000095
196 JGI25160J50197_1012991
197 Ga0055536_1002940
198 Ga0055540_1000981
199 Ga0055531_10001123
200 Ga0055531_10008526
201 Ga0058692_1001113
202 Ga0058692_1001522
203 Ga0065165_1005508
204 Ga0070671_100095523
205 Ga0070662_100093646
206 Ga0068853_100165527
207 Ga0070672_100043900
208 Ga0070665_100011473
209 Ga0070665_100018231
210 Ga0070665_100030166
211 Ga0070665_100036758
212 Ga0068862_100002719
213 Ga0081540_1022925
214 Ga0075365_10011789
215 Ga0075368_10006877
216 Ga0075364_10013853
217 Ga0079104_1000010
218 Ga0105240_10062434
219 Ga0157371_10002849
220 Ga0214544_1000008
221 Ga0209130_1000325
222 Ga0209676_1002579
223 Ga0209025_1000261
224 Ga0209758_1000029
225 Ga0209758_1000121
226 Ga0209758_1002498
227 Ga0209050_1011309
228 Ga0207426_1000066
229 Ga0209051_1002337
230 Ga0209257_1001524
231 Ga0209257_1002142
232 Ga0207682_10005841
233 Ga0207706_10005534
234 Ga0207711_10023560
235 Ga0209281_1000053
236 Ga0209966_1000130
237 Ga0268266_10021103
238 Ga0268265_10053897
239 Ga0307517_10042353
240 Ga0265330_10003036
241 Ga0265330_10030196
242 Ga0265325_10051001
243 Ga0265327_10000622
244 Ga0265316_10000349
245 Ga0265316_10069482
246 Ga0307513_10107639
247 Ga0265314_10023461
248 Ga0307414_10034907
249 Ga0316582_0017698
250 Ga0395900_0001463
251 Ga0395900_0010764
252 Ga0395900_0219116
253 Ga0395898_0000466
254 Ga0395898_0192192
255 Ga0395905_0018714
256 Ga0395905_0127508
257 Ga0436361_0483826
258 Ga0436361_0658394
259 Ga0436361_1207479
260 Ga0466969_0000264
261 Ga0466966_0003189
262 Ga0466960_0010906
263 Ga0466959_0000886
264 Ga0466967_0015057
265 Ga0495610_0024084
266 Ga0495654_0001318
267 Ga0496111_0000448
268 Ga0496112_0004064
269 Ga0496117_0073648
270 Ga0496119_0021867
271 Ga0496121_0000001
272 Ga0496121_0003369
273 Ga0496122_0000009
274 Ga0496122_0075486
275 Ga0496123_0000034
276 Ga0496124_0021355
277 Ga0496125_0000001
278 Ga0501032_0003125
279 Ga0501033_0001611
280 Ga0501033_0066251
281 Ga0501034_0024272
282 Ga0501034_0053497
283 Ga0501036_0004370
284 Ga0501037_0053932
285 Ga0501038_0002001
286 Ga0501039_0001900
287 Ga0501043_0002220
288 Ga0501046_0000636
289 Ga0501047_0004957
290 Ga0501047_0040168
291 Ga0501047_0060086
292 Ga0501047_0120505
293 Ga0501067_0039784
294 Ga0501069_0004251
295 Ga0501070_0000208
296 Ga0501070_0252924
297 Ga0501073_0003007
298 Ga0501073_0030326
299 Ga0501080_0002359
300 Ga0501080_0139126
301 Ga0501083_0002202
302 Ga0501083_0004569
303 Ga0501035_0001370
304 Ga0501035_0008505
305 Ga0501044_0006334
306 Ga0501044_0011829
307 Ga0501044_0014507
308 Ga0501044_0023659
309 nmdc:mga00v17_3624_c1
310 Ga0500646_0015363
311 Ga0500641_0000599
312 Ga0500595_000349
313 Ga0500618_000272
314 Ga0500642_0005089
315 Ga0500642_0012835
316 Ga0500658_0025160
317 Ga0500568_0000114
318 Ga0500616_0000224
319 Ga0500616_0000883
320 Ga0500620_000102
321 Ga0500636_0000004
322 Ga0501084_0013899
323 Ga0501084_0104613
324 Ga0501082_0002591
325 Ga0501082_0011372
326 2503203414
327 2509115832
328 2509373283
329 2511172985
330 2514591716
331 2523104879
332 2585995014
333 2585999556
334 2599723171
335 2600375192
336 2644132804
337 2644338041
338 2739306569
339 2757570705
340 2765468362
341 2770195058
342 2793282825
343 2819684234
344 2821124169
345 2821450779
346 2837653350
347 2838738808
348 2840765893
349 2841842707
350 2841847434
351 2842126536
352 2842142487
353 2844533991
354 2847671940
355 2854898799
356 2854921620
357 2856318330
358 2857531748
359 2869172783
360 2871449639
361 2878037667
362 2878783175
363 2881413574
364 2887376352
365 2889793900
366 2889916882
367 2891051950
368 2899803689
369 2906418367
370 2919171528
371 2924719674
372 2929139348
373 2937882727
374 2939634138
375 2995394971
376 2996313214
377 2996340221
378 8002287924
379 8002392445
380 8048747640
381 8054461810
382 8056880043

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10423

AMNp_N

Bacterial AMP nucleoside phosphorylase N-terminus

29

184

0.96

PF01048

PNP_UDP_1

Phosphorylase superfamily

302

506

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
1t8s-assembly1.cif.gz_C crystal structure of e.coli amp nucleosidase complexed with formicin 5'-monophosphate 0.7695 15 487
1t8s-assembly1.cif.gz_C crystal structure of e.coli amp nucleosidase complexed with formicin 5'-monophosphate 0.7662 15 487
2guw-assembly1.cif.gz_B crystal structure of amp nucleosidase from salmonella typhimurium lt2 0.7595 15 469
1t8s-assembly1.cif.gz_B crystal structure of e.coli amp nucleosidase complexed with formicin 5'-monophosphate 0.7579 15 487
2guw-assembly1.cif.gz_C crystal structure of amp nucleosidase from salmonella typhimurium lt2 0.7569 13 469
ID Description Score Start End Superfamily
2guwB01 Alpha Beta;2-Layer Sandwich;amp nucleosidase, domain 1;AMP nucleoside phosphorylase, N-terminal domain 0.8223 15 154 3.30.1730.10
1t8sB01 Alpha Beta;2-Layer Sandwich;amp nucleosidase, domain 1;AMP nucleoside phosphorylase, N-terminal domain 0.8118 15 147 3.30.1730.10
2guwB01 Alpha Beta;2-Layer Sandwich;amp nucleosidase, domain 1;AMP nucleoside phosphorylase, N-terminal domain 0.8039 15 154 3.30.1730.10
af_P0AE12_1_172_3.30.1730.10 Alpha Beta;2-Layer Sandwich;amp nucleosidase, domain 1;AMP nucleoside phosphorylase, N-terminal domain 0.8008 1 177 3.30.1730.10
af_P0AE12_1_172_3.30.1730.10 Alpha Beta;2-Layer Sandwich;amp nucleosidase, domain 1;AMP nucleoside phosphorylase, N-terminal domain 0.7965 1 177 3.30.1730.10
ID Description Score Start End GO Terms
AF-A0A529XBJ6-F1-model_v4 AMP nucleosidase 0.9672 171 311 GO:0003824
GO:0005829
GO:0009116
AF-A0A5C8B859-F1-model_v4 AMP nucleosidase 0.9666 8 244 GO:0003824
GO:0009116
AF-A0A357FXF4-F1-model_v4 AMP nucleosidase 0.9658 8 307 GO:0003824
GO:0005829
GO:0009116
AF-A0A357FXF4-F1-model_v4 AMP nucleosidase 0.9625 8 307 GO:0003824
GO:0005829
GO:0009116
AF-A0A4Q3QIL2-F1-model_v4 deleted 0.9554 6 220

Map