F295571

General Info

Members Datasets Scaffolds Average Seq Length
192 124 384 459

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10001294|Ga0114129_1000129417
Length 506
Sequence LSITGAWRSFHPIEHKKRVAPTAGRRIRFHQRARPLPGPSSVRAKDNSDVSSADVSLNTVRRISEAAAAAGGRALVIGGWVRDLLRGHPSKDIDIEIFGIPEEQLPALLAPIGRVEPVGQSFPVYKVVPSGGSAGEIDVALPRRESKRGRGHKGFEVHGDPSMNLVDAARRRDFTINAISWDPLTGSYEDPFDGRGDLERRLLRAVDPNTFPDDSLRALRAVQFAARFEFALEAQTAALCRALPLDDLPAERIWGEIEKLLLQAARPSIGLQLALDLGIIRKVMPELLPTVGCEQEPEWHPEGDVWTHTLMVVDKARELNGDLDRPRLTTLMLGALCHDLGKPSTTAVVDGRIRSLDHEQAGVEPTVAMLNRLNIHSIDGFDVRGQVIGLVAHHLKPGAFRKAAYQKVDLELLARVARADCLGRTGNFDCSAMDWFLERARALGVEHQAPAPLLLGRHLLALGLTPGPRIGEILKLVYEKQLDGEVTSVEAGIEEARRLISESATQ

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
20 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
21 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
22 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
37 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
38 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
39 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
40 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
41 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
51 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
52 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
83 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
86 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
89 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
90 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
91 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
92 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
93 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
94 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
95 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
96 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
97 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
98 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
99 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
106 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
107 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
108 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
109 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
110 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
113 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
114 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
115 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
118 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
121 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
122 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
123 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.85
Nodule 0
Rhizoplane 2.08
Rhizosphere 89.06
Stem 0
Stem Tuber 0
Unclassified 11.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10001294 3300009147 Bacteria 33348
2 Ga0065712_10022346 3300005290 Unclassified 1562
3 Ga0065715_10102555 3300005293 Bacteria 3104
4 Ga0065707_10000760 3300005295 Bacteria 16028
5 Ga0065707_10002970 3300005295 Bacteria 5731
6 Ga0070658_10178198 3300005327 Unclassified 1788
7 Ga0070690_100044141 3300005330 Bacteria 2829
8 Ga0070670_100026727 3300005331 Bacteria 4965
9 Ga0070670_100113139 3300005331 Bacteria 2339
10 Ga0070670_100164985 3300005331 Unclassified 1920
11 Ga0070687_100017544 3300005343 Bacteria 3294
12 Ga0070692_10022800 3300005345 Bacteria 3062
13 Ga0070668_100029974 3300005347 Bacteria 4134
14 Ga0070669_100001105 3300005353 Bacteria 19696
15 Ga0070675_100002054 3300005354 Bacteria 14942
16 Ga0070675_100003397 3300005354 Bacteria 12059
17 Ga0070671_100126229 3300005355 Bacteria 2154
18 Ga0070674_100088460 3300005356 Bacteria 2229
19 Ga0070688_100016277 3300005365 Unclassified 4248
20 Ga0070659_100127882 3300005366 Unclassified 2062
21 Ga0070667_100082362 3300005367 Unclassified 2755
22 Ga0070713_100039037 3300005436 Unclassified 3851
23 Ga0070701_10019384 3300005438 Bacteria 3212
24 Ga0070700_100026909 3300005441 Bacteria 3403
25 Ga0070694_100043199 3300005444 Bacteria 3013
26 Ga0070662_100005750 3300005457 Bacteria 7947
27 Ga0068867_100089991 3300005459 Bacteria 2328
28 Ga0070698_100029690 3300005471 Bacteria 5676
29 Ga0070698_100200290 3300005471 Bacteria 1933
30 Ga0070699_100029634 3300005518 Bacteria 4720
31 Ga0070665_100047037 3300005548 Bacteria 4331
32 Ga0070704_100000485 3300005549 Bacteria 18882
33 Ga0070704_100003547 3300005549 Bacteria 8967
34 Ga0070664_100025192 3300005564 Bacteria 4928
35 Ga0068859_100005710 3300005617 Bacteria 12657
36 Ga0068859_100008291 3300005617 Bacteria 10535
37 Ga0068859_100009287 3300005617 Bacteria 9927
38 Ga0068864_100045794 3300005618 Bacteria 3752
39 Ga0068864_100047005 3300005618 Bacteria 3705
40 Ga0068864_100136161 3300005618 Unclassified 2211
41 Ga0068861_100033997 3300005719 Bacteria 3766
42 Ga0068863_100066075 3300005841 Bacteria 3421
43 Ga0068858_100016698 3300005842 Bacteria 6893
44 Ga0068858_100057830 3300005842 Unclassified 3584
45 Ga0068860_100040719 3300005843 Unclassified 4440
46 Ga0068862_100000612 3300005844 Bacteria 37096
47 Ga0075365_10040003 3300006038 Bacteria 3056
48 Ga0075368_10005637 3300006042 Bacteria 4321
49 Ga0075368_10018274 3300006042 Unclassified 2633
50 Ga0075364_10072841 3300006051 Bacteria 2264
51 Ga0075367_10005220 3300006178 Bacteria 6419
52 Ga0075366_10001267 3300006195 Bacteria 12559
53 Ga0075366_10047213 3300006195 Bacteria 2552
54 Ga0097621_100056980 3300006237 Bacteria 3194
55 Ga0075370_10025078 3300006353 Bacteria 3296
56 Ga0068871_100146833 3300006358 Bacteria 2009
57 Ga0075428_100000009 3300006844 Bacteria 266370
58 Ga0075428_100000862 3300006844 Bacteria 31924
59 Ga0075428_100005747 3300006844 Bacteria 13780
60 Ga0075428_100014888 3300006844 Bacteria 8642
61 Ga0075428_100017931 3300006844 Bacteria 7823
62 Ga0075428_100136289 3300006844 Bacteria 2669
63 Ga0075428_100327497 3300006844 Unclassified 1646
64 Ga0075430_100004379 3300006846 Bacteria 11918
65 Ga0075430_100025920 3300006846 Bacteria 4989
66 Ga0075430_100093895 3300006846 Unclassified 2508
67 Ga0075431_100019396 3300006847 Bacteria 6932
68 Ga0075433_10001777 3300006852 Bacteria 16153
69 Ga0075433_10055054 3300006852 Bacteria 3472
70 Ga0075433_10120400 3300006852 Bacteria 2330
71 Ga0075434_100004425 3300006871 Bacteria 12669
72 Ga0075434_100051045 3300006871 Bacteria 4109
73 Ga0075429_100021584 3300006880 Bacteria 5582
74 Ga0075429_100068302 3300006880 Bacteria 3093
75 Ga0075429_100072924 3300006880 Bacteria 2990
76 Ga0075429_100105238 3300006880 Unclassified 2464
77 Ga0097620_100005711 3300006931 Bacteria 12657
78 Ga0097620_100008291 3300006931 Bacteria 10535
79 Ga0097620_100009288 3300006931 Bacteria 9927
80 Ga0075435_100005452 3300007076 Bacteria 8885
81 Ga0111539_10000010 3300009094 Bacteria 366246
82 Ga0111539_10001433 3300009094 Bacteria 31824
83 Ga0111539_10002786 3300009094 Bacteria 23211
84 Ga0114129_10000173 3300009147 Bacteria 70652
85 Ga0114129_10004040 3300009147 Bacteria 20719
86 Ga0114129_10024235 3300009147 Bacteria 8599
87 Ga0114129_10071193 3300009147 Bacteria 4849
88 Ga0114129_10120849 3300009147 Unclassified 3606
89 Ga0105248_10115907 3300009177 Bacteria 3021
90 Ga0157374_10036459 3300013296 Unclassified 4504
91 Ga0157375_10012112 3300013308 Bacteria 7642
92 Ga0157375_10231629 3300013308 Bacteria 2006
93 Ga0157380_10027595 3300014326 Bacteria 4319
94 Ga0157376_10137936 3300014969 Bacteria 2185
95 Ga0207697_10000485 3300025315 Bacteria 22453
96 Ga0207656_10020642 3300025321 Bacteria 2621
97 Ga0207688_10023137 3300025901 Bacteria 3400
98 Ga0207705_10138962 3300025909 Unclassified 1813
99 Ga0207660_10110349 3300025917 Bacteria 2069
100 Ga0207662_10009705 3300025918 Bacteria 5306
101 Ga0207681_10001212 3300025923 Bacteria 16585
102 Ga0207681_10087804 3300025923 Bacteria 2213
103 Ga0207650_10066971 3300025925 Bacteria 2694
104 Ga0207650_10133773 3300025925 Unclassified 1943
105 Ga0207659_10000188 3300025926 Bacteria 36927
106 Ga0207644_10089357 3300025931 Bacteria 2293
107 Ga0207706_10017600 3300025933 Bacteria 6439
108 Ga0207691_10009261 3300025940 Bacteria 9451
109 Ga0207691_10016519 3300025940 Bacteria 7008
110 Ga0207651_10023675 3300025960 Bacteria 3783
111 Ga0207651_10057716 3300025960 Bacteria 2679
112 Ga0207703_10016574 3300026035 Bacteria 5747
113 Ga0207703_10043790 3300026035 Unclassified 3594
114 Ga0207641_10038585 3300026088 Bacteria 3993
115 Ga0207648_10001860 3300026089 Bacteria 23055
116 Ga0207676_10036417 3300026095 Bacteria 3743
117 Ga0207676_10089463 3300026095 Bacteria 2523
118 Ga0207674_10006964 3300026116 Bacteria 13233
119 Ga0207674_10164260 3300026116 Bacteria 2174
120 Ga0207675_100006686 3300026118 Bacteria 10909
121 Ga0207675_100118169 3300026118 Bacteria 2507
122 Ga0207683_10048220 3300026121 Bacteria 3730
123 Ga0207683_10100985 3300026121 Bacteria 2576
124 Ga0207428_10000034 3300027907 Bacteria 231306
125 Ga0207428_10001344 3300027907 Bacteria 26177
126 Ga0207428_10018999 3300027907 Bacteria 5861
127 Ga0207428_10021750 3300027907 Bacteria 5425
128 Ga0268266_10057620 3300028379 Bacteria 3344
129 Ga0268265_10000618 3300028380 Bacteria 35420
130 Ga0268265_10281007 3300028380 Bacteria 1489
131 Ga0268264_10007582 3300028381 Bacteria 9050
132 Ga0307410_10172668 3300031852 Bacteria 1630
133 Ga0307406_10091343 3300031901 Unclassified 2051
134 Ga0307416_100002420 3300032002 Bacteria 10709
135 Ga0307411_10038771 3300032005 Bacteria 3009
136 Ga0373937_0019372 3300036401 Bacteria 6091
137 Ga0373925_0017697 3300037068 Bacteria 5169
138 Ga0439462_0014001 3300042015 Bacteria 2058
139 Ga0439446_0003829 3300042156 Bacteria 3769
140 Ga0439435_0006539 3300042436 Bacteria 2622
141 Ga0495584_0013922 3300046491 Bacteria 4098
142 Ga0495642_0013017 3300046528 Bacteria 3212
143 Ga0495659_0010379 3300046664 Bacteria 2986
144 Ga0495599_0087546 3300046678 Unclassified 1944
145 Ga0496109_0136283 3300048912 Bacteria 2294
146 Ga0496110_0127710 3300048913 Unclassified 2295
147 Ga0496113_0027529 3300048916 Bacteria 4077
148 Ga0496114_0010115 3300048917 Bacteria 7504
149 Ga0501038_0098714 3300049574 Bacteria 2435
150 Ga0501040_0035994 3300049576 Bacteria 3358
151 Ga0501040_0087125 3300049576 Bacteria 2168
152 Ga0501042_0114298 3300049578 Bacteria 1944
153 Ga0501047_0035197 3300049581 Bacteria 4837
154 Ga0501071_0128431 3300049587 Bacteria 1882
155 Ga0501072_0119021 3300049588 Bacteria 2104
156 Ga0501073_0002679 3300049589 Bacteria 13335
157 Ga0501073_0029625 3300049589 Unclassified 3911
158 Ga0501073_0051677 3300049589 Bacteria 2879
159 Ga0501075_0028292 3300049591 Bacteria 4137
160 Ga0501075_0100864 3300049591 Bacteria 2192
161 Ga0501076_0079371 3300049592 Bacteria 2634
162 Ga0501076_0119668 3300049592 Bacteria 2132
163 Ga0501079_0058927 3300049741 Bacteria 2963
164 Ga0501079_0150014 3300049741 Bacteria 1817
165 Ga0501044_0005022 3300049823 Bacteria 14777
166 nmdc:mga03683_6336_c1 3300050489 Bacteria 4046
167 nmdc:mga00v17_53380_c1 3300050491 Bacteria 2463
168 nmdc:mga00v17_979_c1 3300050491 Bacteria 15302
169 nmdc:mga0k408_16477_c1 3300050493 Bacteria 4102
170 nmdc:mga0k408_4388_c1 3300050493 Bacteria 7487
171 nmdc:mga06z11_16905_c1 3300050494 Bacteria 3298
172 nmdc:mga06z11_23333_c1 3300050494 Bacteria 2905
173 nmdc:mga04h51_16081_c1 3300050495 Bacteria 2167
174 nmdc:mga07m45_5162_c1 3300050496 Bacteria 6472
175 nmdc:mga05p37_130_c1 3300050507 Bacteria 68860
176 nmdc:mga05p37_1623_c1 3300050507 Bacteria 26057
177 nmdc:mga05p37_24463_c1 3300050507 Bacteria 7341
178 nmdc:mga05p37_28437_c1 3300050507 Bacteria 6816
179 nmdc:mga05p37_644_c1 3300050507 Bacteria 38645
180 nmdc:mga09592_50626_c1 3300050508 Bacteria 3503
181 nmdc:mga09592_83751_c1 3300050508 Bacteria 2718
182 nmdc:mga0qj67_78898_c1 3300050509 Bacteria 2636
183 nmdc:mga08y16_10_c1 3300050511 Bacteria 470512
184 nmdc:mga08y16_1842_c1 3300050511 Bacteria 21509
185 nmdc:mga08y16_63047_c1 3300050511 Bacteria 3871
186 nmdc:mga0n895_133002_c1 3300050512 Bacteria 2513
187 nmdc:mga0n895_99382_c1 3300050512 Bacteria 2918
188 nmdc:mga0rr50_5173_c1 3300050513 Bacteria 7747
189 nmdc:mga0a205_14352_c1 3300050515 Bacteria 7388
190 nmdc:mga0a205_4241_c1 3300050515 Bacteria 12858
191 Ga0495619_0099080 3300053085 Bacteria 1982
192 Ga0501084_0057770 3300054114 Bacteria 3246
193 Ga0114129_10001294
194 Ga0065712_10022346
195 Ga0065715_10102555
196 Ga0065707_10000760
197 Ga0065707_10002970
198 Ga0070658_10178198
199 Ga0070690_100044141
200 Ga0070670_100026727
201 Ga0070670_100113139
202 Ga0070670_100164985
203 Ga0070687_100017544
204 Ga0070692_10022800
205 Ga0070668_100029974
206 Ga0070669_100001105
207 Ga0070675_100002054
208 Ga0070675_100003397
209 Ga0070671_100126229
210 Ga0070674_100088460
211 Ga0070688_100016277
212 Ga0070659_100127882
213 Ga0070667_100082362
214 Ga0070713_100039037
215 Ga0070701_10019384
216 Ga0070700_100026909
217 Ga0070694_100043199
218 Ga0070662_100005750
219 Ga0068867_100089991
220 Ga0070698_100029690
221 Ga0070698_100200290
222 Ga0070699_100029634
223 Ga0070665_100047037
224 Ga0070704_100000485
225 Ga0070704_100003547
226 Ga0070664_100025192
227 Ga0068859_100005710
228 Ga0068859_100008291
229 Ga0068859_100009287
230 Ga0068864_100045794
231 Ga0068864_100047005
232 Ga0068864_100136161
233 Ga0068861_100033997
234 Ga0068863_100066075
235 Ga0068858_100016698
236 Ga0068858_100057830
237 Ga0068860_100040719
238 Ga0068862_100000612
239 Ga0075365_10040003
240 Ga0075368_10005637
241 Ga0075368_10018274
242 Ga0075364_10072841
243 Ga0075367_10005220
244 Ga0075366_10001267
245 Ga0075366_10047213
246 Ga0097621_100056980
247 Ga0075370_10025078
248 Ga0068871_100146833
249 Ga0075428_100000009
250 Ga0075428_100000862
251 Ga0075428_100005747
252 Ga0075428_100014888
253 Ga0075428_100017931
254 Ga0075428_100136289
255 Ga0075428_100327497
256 Ga0075430_100004379
257 Ga0075430_100025920
258 Ga0075430_100093895
259 Ga0075431_100019396
260 Ga0075433_10001777
261 Ga0075433_10055054
262 Ga0075433_10120400
263 Ga0075434_100004425
264 Ga0075434_100051045
265 Ga0075429_100021584
266 Ga0075429_100068302
267 Ga0075429_100072924
268 Ga0075429_100105238
269 Ga0097620_100005711
270 Ga0097620_100008291
271 Ga0097620_100009288
272 Ga0075435_100005452
273 Ga0111539_10000010
274 Ga0111539_10001433
275 Ga0111539_10002786
276 Ga0114129_10000173
277 Ga0114129_10004040
278 Ga0114129_10024235
279 Ga0114129_10071193
280 Ga0114129_10120849
281 Ga0105248_10115907
282 Ga0157374_10036459
283 Ga0157375_10012112
284 Ga0157375_10231629
285 Ga0157380_10027595
286 Ga0157376_10137936
287 Ga0207697_10000485
288 Ga0207656_10020642
289 Ga0207688_10023137
290 Ga0207705_10138962
291 Ga0207660_10110349
292 Ga0207662_10009705
293 Ga0207681_10001212
294 Ga0207681_10087804
295 Ga0207650_10066971
296 Ga0207650_10133773
297 Ga0207659_10000188
298 Ga0207644_10089357
299 Ga0207706_10017600
300 Ga0207691_10009261
301 Ga0207691_10016519
302 Ga0207651_10023675
303 Ga0207651_10057716
304 Ga0207703_10016574
305 Ga0207703_10043790
306 Ga0207641_10038585
307 Ga0207648_10001860
308 Ga0207676_10036417
309 Ga0207676_10089463
310 Ga0207674_10006964
311 Ga0207674_10164260
312 Ga0207675_100006686
313 Ga0207675_100118169
314 Ga0207683_10048220
315 Ga0207683_10100985
316 Ga0207428_10000034
317 Ga0207428_10001344
318 Ga0207428_10018999
319 Ga0207428_10021750
320 Ga0268266_10057620
321 Ga0268265_10000618
322 Ga0268265_10281007
323 Ga0268264_10007582
324 Ga0307410_10172668
325 Ga0307406_10091343
326 Ga0307416_100002420
327 Ga0307411_10038771
328 Ga0373937_0019372
329 Ga0373925_0017697
330 Ga0439462_0014001
331 Ga0439446_0003829
332 Ga0439435_0006539
333 Ga0495584_0013922
334 Ga0495642_0013017
335 Ga0495659_0010379
336 Ga0495599_0087546
337 Ga0496109_0136283
338 Ga0496110_0127710
339 Ga0496113_0027529
340 Ga0496114_0010115
341 Ga0501038_0098714
342 Ga0501040_0035994
343 Ga0501040_0087125
344 Ga0501042_0114298
345 Ga0501047_0035197
346 Ga0501071_0128431
347 Ga0501072_0119021
348 Ga0501073_0002679
349 Ga0501073_0029625
350 Ga0501073_0051677
351 Ga0501075_0028292
352 Ga0501075_0100864
353 Ga0501076_0079371
354 Ga0501076_0119668
355 Ga0501079_0058927
356 Ga0501079_0150014
357 Ga0501044_0005022
358 nmdc:mga03683_6336_c1
359 nmdc:mga00v17_53380_c1
360 nmdc:mga00v17_979_c1
361 nmdc:mga0k408_16477_c1
362 nmdc:mga0k408_4388_c1
363 nmdc:mga06z11_16905_c1
364 nmdc:mga06z11_23333_c1
365 nmdc:mga04h51_16081_c1
366 nmdc:mga07m45_5162_c1
367 nmdc:mga05p37_130_c1
368 nmdc:mga05p37_1623_c1
369 nmdc:mga05p37_24463_c1
370 nmdc:mga05p37_28437_c1
371 nmdc:mga05p37_644_c1
372 nmdc:mga09592_50626_c1
373 nmdc:mga09592_83751_c1
374 nmdc:mga0qj67_78898_c1
375 nmdc:mga08y16_10_c1
376 nmdc:mga08y16_1842_c1
377 nmdc:mga08y16_63047_c1
378 nmdc:mga0n895_133002_c1
379 nmdc:mga0n895_99382_c1
380 nmdc:mga0rr50_5173_c1
381 nmdc:mga0a205_14352_c1
382 nmdc:mga0a205_4241_c1
383 Ga0495619_0099080
384 Ga0501084_0057770

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12627

PolyA_pol_RNAbd

Probable RNA and SrmB- binding site of polymerase A

229

290

0.88

PF01743

PolyA_pol

Poly A polymerase head domain

74

204

0.86

PF01966

HD

HD domain

305

425

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wbz-assembly2.cif.gz_B trna-processing enzyme (apo form 2) 0.7225 9 427
1vfg-assembly1.cif.gz_A crystal structure of trna nucleotidyltransferase complexed with a primer trna and an incoming atp analog 0.7218 9 395
1miy-assembly1.cif.gz_A crystal structure of bacillus stearothermophilus cca-adding enzyme in complex with ctp 0.7213 6 456
1vfg-assembly1.cif.gz_A crystal structure of trna nucleotidyltransferase complexed with a primer trna and an incoming atp analog 0.7162 9 395
4wbz-assembly2.cif.gz_B trna-processing enzyme (apo form 2) 0.7135 9 427
ID Description Score Start End Superfamily
af_P06961_1_124_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.9088 20 144 3.30.460.10
af_P06961_1_124_3.30.460.10 Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 0.8815 20 144 3.30.460.10
af_P06961_125_350_1.10.3090.10 Mainly Alpha;Orthogonal Bundle;cca-adding enzyme, domain 2;cca-adding enzyme, domain 2 0.8658 148 375 1.10.3090.10
af_L7N672_164_416_1.10.3090.10 Mainly Alpha;Orthogonal Bundle;cca-adding enzyme, domain 2;cca-adding enzyme, domain 2 0.8596 147 393 1.10.3090.10
af_P06961_125_350_1.10.3090.10 Mainly Alpha;Orthogonal Bundle;cca-adding enzyme, domain 2;cca-adding enzyme, domain 2 0.8585 148 375 1.10.3090.10
ID Description Score Start End GO Terms
AF-A0A2V8G2G4-F1-model_v4 Polynucleotide adenylyltransferase 0.9879 271 454 GO:0016779
AF-A0A3D4FXP3-F1-model_v4 Polynucleotide adenylyltransferase 0.9876 55 453 GO:0003723
GO:0005524
GO:0008033
GO:0016779
GO:0042245
GO:0046872
AF-A0A2V8EXS1-F1-model_v4 Polynucleotide adenylyltransferase 0.9865 6 450 GO:0003723
GO:0005524
GO:0008033
GO:0016779
GO:0042245
GO:0046872
AF-A0A7W0NT31-F1-model_v4 HD domain-containing protein 0.9825 102 450 GO:0003723
GO:0005524
GO:0008033
GO:0016779
GO:0042245
GO:0046872
AF-A0A2V8PSG0-F1-model_v4 Polynucleotide adenylyltransferase 0.9795 8 341 GO:0003723
GO:0005524
GO:0008033
GO:0016779
GO:0042245
GO:0046872

Map