F296345

General Info

Members Datasets Scaffolds Average Seq Length
192 151 384 229

Family's Representative Sequence

Representative Sequence 3300053121|Ga0500607_009230|Ga0500607_009230_3568_4368
Length 266
Sequence MSMQCFSQFGLMRKKRSVYSPQPRYMTTIAANLQAVKQRIYAACTAAGRVPESVMLLAVSKAQPAEQLRIAASCGQYAFGENYLQEAEEKIAALSDKLRDISHAGGAAKRLEWHFIGPLQSNKTRAVAEQFDWLHSLDRLKLAERLSIQRPTTLPPLQVCIQVNISGEASKSGCQPDELSALAKAIAHLPGLTLRGLMGIPEPTEDIALLRSRFALLRQLRDRLNTEGLALDTLSMGMSHDLEAAILEGATIVRVGTAIFGERKNN

Samples

Sample ID Description Type Environment
1 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
7 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
8 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
9 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
10 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
11 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
12 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
13 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
14 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
15 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
16 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
17 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
18 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
19 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
20 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
21 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
22 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
31 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
32 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
33 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
34 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
35 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
36 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
37 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
38 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
39 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
40 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
41 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
42 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
43 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
44 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
45 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
46 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
47 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
48 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
49 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
50 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
53 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
54 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
55 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
56 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
57 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
58 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
59 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
60 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
61 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
62 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
63 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
64 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
65 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
66 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
67 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
68 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
69 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
70 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
71 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
72 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
73 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
74 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
79 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
80 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
81 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
82 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
83 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
84 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
85 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
86 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
87 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
88 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
89 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
90 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
91 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
92 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
93 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
94 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
99 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
100 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
101 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
102 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
103 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
104 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
119 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
120 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
121 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
122 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
123 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
124 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
125 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
126 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
127 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
128 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
129 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
130 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
131 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
132 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
133 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
134 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
135 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
136 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
137 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
138 2643221596 Acidovorax sp. Root70 Isolate Unclassified
139 2643221609 Acidovorax sp. Root217 Isolate Unclassified
140 2643221611 Acidovorax sp. Root219 Isolate Unclassified
141 2643221652 Acidovorax sp. Root402 Isolate Unclassified
142 2738543012 Acidovorax sp. CF301 Isolate Unclassified
143 2816332133 Acidovorax radicis 2721A Isolate Unclassified
144 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
145 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
146 2852103415 Edaphovirga cremea DSM 105170 Isolate Rhizosphere
147 2891633521 Azoarcus rhizosphaerae CC-YHH848 Isolate Rhizosphere
148 2904434214 Robbsia andropogonis 1567 Isolate Rhizosphere
149 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
150 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
151 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.19
Metatranscriptomes 0
Isolates 7.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.21
Nodule 0.52
Rhizoplane 1.04
Rhizosphere 83.33
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500607_009230 3300053121 Bacteria 5947
2 JGI24739J22299_10001174 3300001989 Bacteria 9807
3 JGI24735J21928_10026361 3300002067 Bacteria 1747
4 rootL2_10000804 3300003322 Bacteria 38622
5 Ga0070687_100060644 3300005343 Bacteria 1996
6 Ga0068867_100036778 3300005459 Bacteria 3556
7 Ga0070665_100035990 3300005548 Bacteria 4980
8 Ga0070665_100257031 3300005548 Bacteria 1748
9 Ga0068855_100002002 3300005563 Bacteria 25309
10 Ga0075366_10009327 3300006195 Bacteria 5479
11 Ga0075436_100431728 3300006914 Bacteria 957
12 Ga0075435_100066610 3300007076 Bacteria 2931
13 Ga0105251_10000097 3300009011 Bacteria 85550
14 Ga0105244_10105103 3300009036 Bacteria 1378
15 Ga0105242_10272261 3300009176 Bacteria 1534
16 Ga0105248_11636710 3300009177 Bacteria 730
17 Ga0163162_10273627 3300013306 Bacteria 1821
18 Ga0163163_10425952 3300014325 Bacteria 1386
19 Ga0157376_10088113 3300014969 Bacteria 2680
20 Ga0182007_10001387 3300015262 Bacteria 13021
21 Ga0163161_10156477 3300017792 Bacteria 1735
22 Ga0213872_10000836 3300021361 Bacteria 22348
23 Ga0213872_10005387 3300021361 Bacteria 6593
24 Ga0213872_10031719 3300021361 Bacteria 2422
25 Ga0207713_1000305 3300025735 Bacteria 56170
26 Ga0207688_10001510 3300025901 Bacteria 12224
27 Ga0207647_10034481 3300025904 Bacteria 3230
28 Ga0207645_10002062 3300025907 Bacteria 16087
29 Ga0207662_10139846 3300025918 Bacteria 1533
30 Ga0207704_10747429 3300025938 Bacteria 813
31 Ga0207639_10585553 3300026041 Bacteria 1027
32 Ga0207683_10111087 3300026121 Bacteria 2454
33 Ga0209983_1007202 3300027665 Bacteria 2281
34 Ga0265331_10132816 3300031250 Bacteria 1135
35 Ga0265316_10130591 3300031344 Bacteria 1892
36 Ga0307408_100000654 3300031548 Bacteria 29073
37 Ga0307408_100022879 3300031548 Bacteria 4252
38 Ga0316575_10036551 3300031665 Bacteria 1932
39 Ga0316579_10185749 3300031691 Bacteria 1005
40 Ga0316576_10007715 3300031727 Bacteria 6789
41 Ga0316576_10062038 3300031727 Bacteria 2740
42 Ga0316576_10112561 3300031727 Bacteria 2041
43 Ga0316578_10012036 3300031728 Bacteria 4551
44 Ga0316578_10066437 3300031728 Bacteria 2130
45 Ga0307405_10094180 3300031731 Bacteria 1991
46 Ga0307405_10670600 3300031731 Bacteria 855
47 Ga0316577_10010830 3300031733 Bacteria 4930
48 Ga0316577_10073325 3300031733 Bacteria 1911
49 Ga0307410_10037652 3300031852 Bacteria 3161
50 Ga0307406_10062016 3300031901 Bacteria 2417
51 Ga0307406_10176216 3300031901 Bacteria 1552
52 Ga0307406_10269259 3300031901 Bacteria 1293
53 Ga0307407_10077614 3300031903 Bacteria 1998
54 Ga0307412_10157975 3300031911 Bacteria 1681
55 Ga0307412_10204962 3300031911 Bacteria 1500
56 Ga0307409_100525224 3300031995 Bacteria 1157
57 Ga0307416_100134499 3300032002 Bacteria 2233
58 Ga0307416_100181968 3300032002 Bacteria 1971
59 Ga0307416_100557354 3300032002 Bacteria 1220
60 Ga0307414_10260012 3300032004 Bacteria 1448
61 Ga0307411_10141877 3300032005 Bacteria 1772
62 Ga0307411_10433852 3300032005 Bacteria 1095
63 Ga0307415_100005509 3300032126 Bacteria 6728
64 Ga0316580_10005405 3300032139 Bacteria 3725
65 Ga0373960_0015967 3300035121 Bacteria 1925
66 Ga0316574_0028613 3300035398 Bacteria 3362
67 Ga0316574_0044160 3300035398 Bacteria 2757
68 Ga0316574_0092102 3300035398 Bacteria 1934
69 Ga0373947_0112099 3300035725 Bacteria 1725
70 Ga0316582_0004969 3300036647 Bacteria 6795
71 Ga0316584_0265814 3300036712 Bacteria 1250
72 Ga0400491_18081 3300038727 Bacteria 1081
73 Ga0400483_011190 3300039062 Bacteria 182340
74 Ga0400483_215675 3300039062 Bacteria 181282
75 Ga0400487_61968 3300039110 Bacteria 3115
76 Ga0436361_0019055 3300039447 Bacteria 20996
77 Ga0436361_0098161 3300039447 Bacteria 4223
78 Ga0436361_0319598 3300039447 Bacteria 24219
79 Ga0436361_0934413 3300039447 Bacteria 8263
80 Ga0439447_053375 3300041407 Bacteria 961
81 Ga0439461_0003126 3300041410 Bacteria 2702
82 Ga0439431_0058136 3300041997 Bacteria 1013
83 Ga0439433_0036260 3300041999 Bacteria 1139
84 Ga0439443_002104 3300042003 Bacteria 2333
85 Ga0439451_003707 3300042009 Bacteria 3098
86 Ga0450923_007861 3300042125 Bacteria 1818
87 Ga0450923_049669 3300042125 Bacteria 898
88 Ga0450890_014554 3300042127 Bacteria 1031
89 Ga0450896_001934 3300042133 Bacteria 2629
90 Ga0450899_004822 3300042135 Bacteria 1446
91 Ga0450899_006863 3300042135 Bacteria 1236
92 Ga0439446_0017619 3300042156 Bacteria 1997
93 Ga0439446_0020717 3300042156 Bacteria 1854
94 Ga0450908_005405 3300042184 Bacteria 2450
95 Ga0439434_0002415 3300042435 Bacteria 5431
96 Ga0439435_0005430 3300042436 Bacteria 2803
97 Ga0439444_0000814 3300042437 Bacteria 3753
98 Ga0439464_0010061 3300042439 Bacteria 2495
99 Ga0451577_0001211 3300042876 Bacteria 36125
100 Ga0451577_0058850 3300042876 Bacteria 3426
101 Ga0451577_0304078 3300042876 Bacteria 1445
102 Ga0451577_0744413 3300042876 Bacteria 887
103 Ga0453683_0095096 3300044673 Bacteria 1869
104 Ga0453683_0230583 3300044673 Bacteria 1179
105 Ga0453684_0000014 3300044712 Bacteria 993311
106 Ga0453684_0000158 3300044712 Bacteria 302033
107 Ga0453684_0005198 3300044712 Bacteria 26151
108 Ga0453684_0008186 3300044712 Bacteria 18855
109 Ga0453684_0139268 3300044712 Bacteria 2900
110 Ga0451576_0002773 3300045051 Bacteria 25304
111 Ga0451576_0035101 3300045051 Bacteria 5322
112 Ga0451576_0079726 3300045051 Bacteria 3407
113 Ga0451576_0106178 3300045051 Bacteria 2922
114 Ga0451576_0518574 3300045051 Bacteria 1252
115 Ga0495617_125310 3300046452 Bacteria 826
116 Ga0495627_000192 3300046453 Bacteria 67494
117 Ga0495629_0000369 3300046459 Bacteria 38164
118 Ga0495653_0001073 3300046463 Bacteria 21089
119 Ga0495580_0017523 3300046472 Bacteria 5355
120 Ga0495582_0043023 3300046473 Bacteria 2487
121 Ga0495628_0040077 3300046516 Bacteria 3744
122 Ga0495630_0335678 3300046517 Bacteria 1156
123 Ga0495631_0064968 3300046518 Bacteria 1579
124 Ga0495632_0234084 3300046519 Bacteria 827
125 Ga0495652_0519521 3300046529 Bacteria 823
126 Ga0495654_0001627 3300046530 Bacteria 15227
127 Ga0495640_0171978 3300046533 Bacteria 1384
128 Ga0495634_0147569 3300046642 Bacteria 1489
129 Ga0495646_0104494 3300046680 Bacteria 1619
130 Ga0495669_0104375 3300046684 Bacteria 1319
131 Ga0495613_0140724 3300046689 Bacteria 1724
132 Ga0495624_0012781 3300046690 Bacteria 5732
133 Ga0495674_0098585 3300047319 Bacteria 2488
134 Ga0495672_0003217 3300047320 Bacteria 14202
135 Ga0495593_0009944 3300047673 Bacteria 5515
136 Ga0496106_0000031 3300048909 Bacteria 135370
137 Ga0496113_0107807 3300048916 Bacteria 2165
138 Ga0496116_0032777 3300048919 Bacteria 3698
139 Ga0496117_0042674 3300048920 Bacteria 3307
140 Ga0496118_0008488 3300048921 Bacteria 10605
141 Ga0496121_0028597 3300048924 Bacteria 5185
142 Ga0496123_0286771 3300048926 Bacteria 793
143 Ga0496126_0379631 3300048929 Bacteria 1151
144 Ga0501032_0187771 3300049569 Bacteria 1351
145 Ga0501036_0022038 3300049572 Bacteria 5357
146 Ga0501037_0282355 3300049573 Bacteria 1156
147 Ga0501038_0040436 3300049574 Bacteria 4072
148 Ga0501039_0012565 3300049575 Bacteria 6469
149 Ga0501039_0429171 3300049575 Bacteria 1038
150 Ga0501041_0053706 3300049577 Bacteria 2457
151 Ga0501042_0048657 3300049578 Bacteria 3023
152 Ga0501042_0079436 3300049578 Bacteria 2350
153 Ga0501043_0506468 3300049579 Bacteria 901
154 Ga0501048_0086564 3300049582 Bacteria 2210
155 Ga0501071_0003903 3300049587 Bacteria 9394
156 Ga0501072_0128472 3300049588 Bacteria 2019
157 Ga0501075_0470401 3300049591 Bacteria 959
158 Ga0501076_0171288 3300049592 Bacteria 1769
159 Ga0501209_002462 3300049656 Bacteria 2856
160 Ga0501079_0150935 3300049741 Bacteria 1811
161 Ga0501080_0152397 3300049742 Bacteria 2136
162 Ga0501080_0566280 3300049742 Bacteria 1011
163 Ga0501081_0084249 3300049743 Bacteria 2229
164 Ga0501081_0095605 3300049743 Bacteria 2095
165 Ga0501035_0347161 3300049822 Bacteria 1242
166 nmdc:mga00v17_23302_c1 3300050491 Bacteria 3580
167 nmdc:mga0k408_41438_c1 3300050493 Bacteria 2651
168 nmdc:mga08x19_122076_c1 3300050514 Bacteria 1747
169 Ga0500641_0003703 3300053096 Bacteria 5397
170 Ga0500650_0000069 3300053098 Bacteria 31414
171 Ga0500618_003946 3300053125 Bacteria 4914
172 Ga0500559_0028585 3300053136 Bacteria 2383
173 Ga0500636_0000052 3300053177 Bacteria 55675
174 Ga0500625_001236 3300053729 Bacteria 8502
175 Ga0501082_0130663 3300060353 Bacteria 2179
176 Ga0501082_0526453 3300060353 Bacteria 1033
177 Ga0530510_0025747 3300061734 Bacteria 4208
178 2526212537 2526164512 Bacteria 4025691
179 2643991898 2643221596 Bacteria 5006805
180 2644057333 2643221609 Bacteria 6756331
181 2644072570 2643221611 Bacteria 6820941
182 2644293242 2643221652 Bacteria 5140275
183 2739241598 2738543012 Bacteria 7115078
184 2816471098 2816332133 Bacteria 7249298
185 2846033799 2846033681 Bacteria 4377894
186 2846039101 2846037992 Bacteria 4526407
187 2852106308 2852103415 Bacteria 5193810
188 2891635691 2891633521 Bacteria 4602265
189 2904438417 2904434214 Bacteria 6230908
190 2919498399 2919497567 Bacteria 4408621
191 2921643745 2921643360 Bacteria 11448031
192 2998345199 2998344455 Bacteria 4222996
193 Ga0500607_009230
194 JGI24739J22299_10001174
195 JGI24735J21928_10026361
196 rootL2_10000804
197 Ga0070687_100060644
198 Ga0068867_100036778
199 Ga0070665_100035990
200 Ga0070665_100257031
201 Ga0068855_100002002
202 Ga0075366_10009327
203 Ga0075436_100431728
204 Ga0075435_100066610
205 Ga0105251_10000097
206 Ga0105244_10105103
207 Ga0105242_10272261
208 Ga0105248_11636710
209 Ga0163162_10273627
210 Ga0163163_10425952
211 Ga0157376_10088113
212 Ga0182007_10001387
213 Ga0163161_10156477
214 Ga0213872_10000836
215 Ga0213872_10005387
216 Ga0213872_10031719
217 Ga0207713_1000305
218 Ga0207688_10001510
219 Ga0207647_10034481
220 Ga0207645_10002062
221 Ga0207662_10139846
222 Ga0207704_10747429
223 Ga0207639_10585553
224 Ga0207683_10111087
225 Ga0209983_1007202
226 Ga0265331_10132816
227 Ga0265316_10130591
228 Ga0307408_100000654
229 Ga0307408_100022879
230 Ga0316575_10036551
231 Ga0316579_10185749
232 Ga0316576_10007715
233 Ga0316576_10062038
234 Ga0316576_10112561
235 Ga0316578_10012036
236 Ga0316578_10066437
237 Ga0307405_10094180
238 Ga0307405_10670600
239 Ga0316577_10010830
240 Ga0316577_10073325
241 Ga0307410_10037652
242 Ga0307406_10062016
243 Ga0307406_10176216
244 Ga0307406_10269259
245 Ga0307407_10077614
246 Ga0307412_10157975
247 Ga0307412_10204962
248 Ga0307409_100525224
249 Ga0307416_100134499
250 Ga0307416_100181968
251 Ga0307416_100557354
252 Ga0307414_10260012
253 Ga0307411_10141877
254 Ga0307411_10433852
255 Ga0307415_100005509
256 Ga0316580_10005405
257 Ga0373960_0015967
258 Ga0316574_0028613
259 Ga0316574_0044160
260 Ga0316574_0092102
261 Ga0373947_0112099
262 Ga0316582_0004969
263 Ga0316584_0265814
264 Ga0400491_18081
265 Ga0400483_011190
266 Ga0400483_215675
267 Ga0400487_61968
268 Ga0436361_0019055
269 Ga0436361_0098161
270 Ga0436361_0319598
271 Ga0436361_0934413
272 Ga0439447_053375
273 Ga0439461_0003126
274 Ga0439431_0058136
275 Ga0439433_0036260
276 Ga0439443_002104
277 Ga0439451_003707
278 Ga0450923_007861
279 Ga0450923_049669
280 Ga0450890_014554
281 Ga0450896_001934
282 Ga0450899_004822
283 Ga0450899_006863
284 Ga0439446_0017619
285 Ga0439446_0020717
286 Ga0450908_005405
287 Ga0439434_0002415
288 Ga0439435_0005430
289 Ga0439444_0000814
290 Ga0439464_0010061
291 Ga0451577_0001211
292 Ga0451577_0058850
293 Ga0451577_0304078
294 Ga0451577_0744413
295 Ga0453683_0095096
296 Ga0453683_0230583
297 Ga0453684_0000014
298 Ga0453684_0000158
299 Ga0453684_0005198
300 Ga0453684_0008186
301 Ga0453684_0139268
302 Ga0451576_0002773
303 Ga0451576_0035101
304 Ga0451576_0079726
305 Ga0451576_0106178
306 Ga0451576_0518574
307 Ga0495617_125310
308 Ga0495627_000192
309 Ga0495629_0000369
310 Ga0495653_0001073
311 Ga0495580_0017523
312 Ga0495582_0043023
313 Ga0495628_0040077
314 Ga0495630_0335678
315 Ga0495631_0064968
316 Ga0495632_0234084
317 Ga0495652_0519521
318 Ga0495654_0001627
319 Ga0495640_0171978
320 Ga0495634_0147569
321 Ga0495646_0104494
322 Ga0495669_0104375
323 Ga0495613_0140724
324 Ga0495624_0012781
325 Ga0495674_0098585
326 Ga0495672_0003217
327 Ga0495593_0009944
328 Ga0496106_0000031
329 Ga0496113_0107807
330 Ga0496116_0032777
331 Ga0496117_0042674
332 Ga0496118_0008488
333 Ga0496121_0028597
334 Ga0496123_0286771
335 Ga0496126_0379631
336 Ga0501032_0187771
337 Ga0501036_0022038
338 Ga0501037_0282355
339 Ga0501038_0040436
340 Ga0501039_0012565
341 Ga0501039_0429171
342 Ga0501041_0053706
343 Ga0501042_0048657
344 Ga0501042_0079436
345 Ga0501043_0506468
346 Ga0501048_0086564
347 Ga0501071_0003903
348 Ga0501072_0128472
349 Ga0501075_0470401
350 Ga0501076_0171288
351 Ga0501209_002462
352 Ga0501079_0150935
353 Ga0501080_0152397
354 Ga0501080_0566280
355 Ga0501081_0084249
356 Ga0501081_0095605
357 Ga0501035_0347161
358 nmdc:mga00v17_23302_c1
359 nmdc:mga0k408_41438_c1
360 nmdc:mga08x19_122076_c1
361 Ga0500641_0003703
362 Ga0500650_0000069
363 Ga0500618_003946
364 Ga0500559_0028585
365 Ga0500636_0000052
366 Ga0500625_001236
367 Ga0501082_0130663
368 Ga0501082_0526453
369 Ga0530510_0025747
370 2526212537
371 2643991898
372 2644057333
373 2644072570
374 2644293242
375 2739241598
376 2816471098
377 2846033799
378 2846039101
379 2852106308
380 2891635691
381 2904438417
382 2919498399
383 2921643745
384 2998345199

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

28

264

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7uax-assembly1.cif.gz_A the crystal structure of the k36a/k38a double mutant of e. coli yggs in complex with plp 0.9488 4 207
3sy1-assembly1.cif.gz_A crystal structure of engineered protein. northeast structural genomics consortium target or70 0.9482 1 208
7ubp-assembly1.cif.gz_A the crystal structure of the k36a/k137a double mutant of e. coli yggs in complex with plp 0.9452 4 208
7uat-assembly1.cif.gz_A the crystal structure of the k36a mutant of e. coli yggs in complex with plp 0.9435 4 208
7uau-assembly1.cif.gz_A the crystal structure of the k137a mutant of e. coli yggs in complex with plp 0.9423 4 208
ID Description Score Start End Superfamily
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9422 4 208 3.20.20.10
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9034 4 208 3.20.20.10
af_P9WFQ7_2_257_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8892 2 209 3.20.20.10
af_P52057_2_244_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8759 2 213 3.20.20.10
3cpgA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.8754 2 206 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A521WC95-F1-model_v4 YggS family pyridoxal phosphate enzyme 0.9875 135 212 GO:0030170
AF-A0A355R117-F1-model_v4 YggS family pyridoxal phosphate-dependent enzyme 0.9785 1 128 GO:0030170
AF-A0A5Q4YSJ0-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9722 1 213 GO:0030170
AF-A0A370N4T9-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9718 1 213 GO:0030170
AF-A0A160FGW6-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9711 1 213 GO:0030170

Map