F296441

General Info

Members Datasets Scaffolds Average Seq Length
192 166 382 363

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2984601300|2984604723
Length 397
Sequence LGPSAVFESDSVFPCLGSPHALKEQKVNFGDIMSDTAAPALKEIFNHEKLQHIADQTRAVHPPFDVSAFMALATENLEALGIMQRMRQVATSLHATLPGDYARNIEILTAAAPGIGNGFASISLPEYVALYGLDDFDLSMDALQYFTRFGSSEFAIRHFLQKDLTATLAVMETWSRHENEHVRRLASEGCRPRLPWSFQLKPLIDDPSPVTAILDTMKADQALYVRKSVANHLNDITKDNPAFVLALIDGWPKDNPHTRWIMRQALRTLIKKGDTAALAHLGAHEEAQITLAAFEVLPAKVALGNPVRISASFTSTAKSRQKLVIDYAVHYVKKSGDASAKVFKWKEVELPPGETCKLSISRAIRDFTTRKHYPGVHRVDLVINGRLIAESAFELLF

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
7 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
17 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
18 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
20 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
21 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
24 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
25 3300012497 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 Metagenome Rhizosphere
26 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
27 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
30 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
32 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
34 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
40 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
42 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
43 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
45 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
46 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
50 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
51 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
52 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
53 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
54 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
55 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
56 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
57 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
58 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
59 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
60 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
61 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
62 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
63 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
64 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
65 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
66 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
67 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
68 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
69 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
70 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
71 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
72 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
73 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
74 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
75 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
76 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
77 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
78 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
79 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
80 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
81 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
82 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
83 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
84 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
85 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
86 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
87 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
88 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
89 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
90 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
91 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
92 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
93 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
94 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
95 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
96 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
97 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
98 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
99 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
100 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
101 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
102 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
103 2599185307 Pseudomonas sp. NFACC02 Isolate Rhizoplane
104 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
105 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
106 2643221582 Rhizobium sp. Root651 Isolate Unclassified
107 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
108 2643221693 Rhizobium sp. Root491 Isolate Unclassified
109 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
110 2738543024 Aminobacter sp. AP02 Isolate Unclassified
111 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
112 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
113 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
114 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
115 2831864461 Roseateles noduli HZ7 Isolate Nodule
116 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
117 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
118 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
119 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
120 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
121 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
122 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
123 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
124 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
125 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
126 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
127 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
128 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
129 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
130 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
131 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
132 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
133 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
134 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
135 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
136 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
137 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
138 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
139 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
140 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
141 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
142 2922554459 Rhodococcus sp. 66b Isolate Unclassified
143 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
144 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
145 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
146 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
147 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
148 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
149 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
150 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
151 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
152 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
153 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
154 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
155 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
156 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
157 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
158 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
159 2996336353 Mesorhizobium sp. YM1C-6-2 Isolate Unclassified
160 3007395558 Pseudomonas chlororaphis PCL1601 Isolate Rhizosphere
161 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified
162 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
163 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
164 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
165 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
166 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 60.42
Metatranscriptomes 0
Isolates 39.58

Biome Distribution

Category Percentage (%)
Aerial Root 2.08
Bulb 0
Endosphere 19.79
Nodule 16.15
Rhizoplane 4.17
Rhizosphere 30.73
Stem 0
Stem Tuber 0
Unclassified 0.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10033382 3300003187 Bacteria 1983
2 rootH2_10055440 3300003320 Bacteria 2052
3 rootH1_10166522 3300003323 Bacteria 2144
4 Ga0055526_1000906 3300003771 Bacteria 22039
5 Ga0055531_10001544 3300003794 Bacteria 16864
6 Ga0058692_1001955 3300003856 Bacteria 7181
7 Ga0058692_1002400 3300003856 Bacteria 6280
8 Ga0055543_1005136 3300004625 Bacteria 3401
9 Ga0065165_1000153 3300005262 Bacteria 120209
10 Ga0065165_1000569 3300005262 Bacteria 54781
11 Ga0068869_100000021 3300005334 Bacteria 66278
12 Ga0070669_100082206 3300005353 Bacteria 2401
13 Ga0070714_100190298 3300005435 Bacteria 1872
14 Ga0070665_100011379 3300005548 Bacteria 8996
15 Ga0070665_100055950 3300005548 Bacteria 3956
16 Ga0068854_100195428 3300005578 Bacteria 1587
17 Ga0075368_10012400 3300006042 Bacteria 3115
18 Ga0075364_10000619 3300006051 Bacteria 18320
19 Ga0075369_10060731 3300006186 Bacteria 1649
20 Ga0075366_10017546 3300006195 Bacteria 4120
21 Ga0097621_100016803 3300006237 Bacteria 5544
22 Ga0075370_10029590 3300006353 Bacteria 3051
23 Ga0075370_10108689 3300006353 Bacteria 1609
24 Ga0068871_100011905 3300006358 Bacteria 6402
25 Ga0068865_100031979 3300006881 Bacteria 3512
26 Ga0079104_1000063 3300006946 Bacteria 159519
27 Ga0099826_10000590 3300006948 Bacteria 18363
28 Ga0099826_10006096 3300006948 Bacteria 8735
29 Ga0105246_10100055 3300011119 Bacteria 2109
30 Ga0157319_1000016 3300012497 Bacteria 127256
31 Ga0157373_10013416 3300013100 Bacteria 6011
32 Ga0157371_10000002 3300013102 Bacteria 665040
33 Ga0157370_10000143 3300013104 Bacteria 87289
34 Ga0157380_10075982 3300014326 Bacteria 2732
35 Ga0209566_101256 3300025225 Bacteria 8588
36 Ga0209025_1001475 3300025294 Bacteria 30611
37 Ga0209564_1000008 3300025295 Bacteria 953227
38 Ga0209758_1000105 3300025297 Bacteria 221415
39 Ga0209758_1013427 3300025297 Bacteria 4465
40 Ga0209050_1000297 3300025298 Bacteria 104630
41 Ga0209050_1005092 3300025298 Bacteria 8474
42 Ga0209051_1001021 3300025303 Bacteria 26776
43 Ga0209257_1000984 3300025304 Bacteria 38671
44 Ga0207689_10000195 3300025942 Bacteria 53117
45 Ga0207648_10048736 3300026089 Bacteria 3708
46 Ga0209281_1000110 3300027111 Bacteria 215631
47 Ga0209371_1000003 3300027312 Bacteria 1122971
48 Ga0209371_1001357 3300027312 Bacteria 16945
49 Ga0209282_1001047 3300027666 Bacteria 14588
50 Ga0209282_1030235 3300027666 Bacteria 3337
51 Ga0209813_10001466 3300027866 Bacteria 5309
52 Ga0268266_10005338 3300028379 Bacteria 12023
53 Ga0268256_1000004 3300030500 Bacteria 1122967
54 Ga0316181_1162322 3300030744 Bacteria 3206
55 Ga0265320_10000819 3300031240 Bacteria 23457
56 Ga0307408_100002197 3300031548 Bacteria 13950
57 Ga0265314_10181851 3300031711 Unclassified 1259
58 Ga0316577_10006772 3300031733 Bacteria 6080
59 Ga0307406_10001876 3300031901 Bacteria 11474
60 Ga0307406_10116986 3300031901 Bacteria 1846
61 Ga0453683_0006321 3300044673 Bacteria 8136
62 Ga0451576_0035103 3300045051 Bacteria 5322
63 Ga0495605_0001317 3300046474 Bacteria 16435
64 Ga0495607_0003139 3300046501 Bacteria 12821
65 Ga0495607_0014709 3300046501 Bacteria 5086
66 Ga0495606_0008102 3300046507 Bacteria 9215
67 Ga0495620_0005670 3300046515 Bacteria 6948
68 Ga0495643_0000290 3300046522 Bacteria 71544
69 Ga0495654_0000121 3300046530 Bacteria 86743
70 Ga0495633_0053033 3300046558 Bacteria 1909
71 Ga0495588_0001686 3300046674 Bacteria 9404
72 Ga0495672_0002472 3300047320 Bacteria 16974
73 Ga0495681_0003679 3300047470 Bacteria 10645
74 Ga0496108_0039378 3300048911 Bacteria 3940
75 Ga0496110_0079837 3300048913 Bacteria 2914
76 Ga0496111_0166102 3300048914 Bacteria 1639
77 Ga0496116_0010207 3300048919 Bacteria 7900
78 Ga0496116_0048456 3300048919 Bacteria 2851
79 Ga0496117_0000016 3300048920 Bacteria 523642
80 Ga0496117_0027734 3300048920 Bacteria 4403
81 Ga0496118_0002108 3300048921 Bacteria 27877
82 Ga0496118_0023918 3300048921 Bacteria 5289
83 Ga0496120_0000164 3300048923 Bacteria 111959
84 Ga0496120_0113649 3300048923 Bacteria 1410
85 Ga0496121_0000003 3300048924 Bacteria 1191431
86 Ga0496121_0000180 3300048924 Bacteria 141128
87 Ga0496122_0000002 3300048925 Bacteria 905834
88 Ga0496123_0000002 3300048926 Bacteria 1811682
89 Ga0496123_0037566 3300048926 Bacteria 3417
90 Ga0496124_0018204 3300048927 Bacteria 6587
91 Ga0496124_0046918 3300048927 Bacteria 3698
92 Ga0496124_0075246 3300048927 Bacteria 2789
93 Ga0496124_0076276 3300048927 Bacteria 2767
94 Ga0496124_0112058 3300048927 Bacteria 2194
95 Ga0496125_0000200 3300048928 Bacteria 126369
96 Ga0496125_0062197 3300048928 Bacteria 2987
97 Ga0496126_0056179 3300048929 Bacteria 3559
98 Ga0496126_0213040 3300048929 Bacteria 1625
99 Ga0501080_0119113 3300049742 Bacteria 2447
100 nmdc:mga00v17_53_c1 3300050491 Bacteria 72424
101 nmdc:mga00v17_60228_c1 3300050491 Bacteria 2331
102 nmdc:mga0yw44_115_c1 3300050492 Bacteria 24900
103 nmdc:mga06z11_14049_c1 3300050494 Bacteria 3535
104 nmdc:mga07m45_25418_c2 3300050496 Bacteria 1777
105 nmdc:mga0sz30_6385_c1 3300050516 Bacteria 4376
106 Ga0500556_0011256 3300053104 Bacteria 2646
107 Ga0500560_000068 3300053107 Bacteria 10023
108 Ga0500618_000171 3300053125 Bacteria 54421
109 Ga0500561_0000136 3300053137 Bacteria 14068
110 Ga0500568_0000035 3300053139 Bacteria 137912
111 Ga0500568_0027117 3300053139 Bacteria 2398
112 Ga0500616_0001649 3300053153 Bacteria 20642
113 Ga0500622_0001845 3300053156 Bacteria 16037
114 Ga0500624_001293 3300053157 Bacteria 4321
115 Ga0500634_0002361 3300053161 Bacteria 7920
116 2984604723 2984601300 Bacteria 5455244
117 2511168321 2510917026 Bacteria 7046020
118 2514586434 2513237351 Bacteria 6968952
119 2537875804 2537561587 Bacteria 5425293
120 2540606117 2540341094 Bacteria 4061186
121 2554245393 2554235003 Bacteria 5877155
122 2559296778 2558860242 Bacteria 5568029
123 2566995653 2565956761 Bacteria 6601618
124 2585997298 2585427633 Bacteria 6413184
125 2586001906 2585427634 Bacteria 6455027
126 2599602731 2599185210 Bacteria 5624189
127 2599719964 2599185236 Bacteria 6875203
128 2599973814 2599185307 Bacteria 6194719
129 2601610352 2600255279 Bacteria 5605316
130 2601747318 2600255308 Bacteria 5611129
131 2643917245 2643221582 Bacteria 5804683
132 2644130440 2643221623 Bacteria 5239945
133 2644520905 2643221693 Bacteria 5513853
134 2738888581 2738541308 Bacteria 7020677
135 2739307607 2738543024 Bacteria 5603683
136 2808987231 2808606387 Bacteria 5697198
137 2819557433 2818991439 Bacteria 6907412
138 2819686589 2818991461 Bacteria 7026071
139 2821126301 2821123053 Bacteria 7836056
140 2831865530 2831864461 Bacteria 6502356
141 2838678061 2838675328 Bacteria 4909118
142 2838717033 2838714209 Bacteria 5525906
143 2838722356 2838719591 Bacteria 5523910
144 2838727782 2838724970 Bacteria 4908691
145 2838737223 2838736955 Bacteria 5760694
146 2841842408 2841840854 Bacteria 5761912
147 2841849439 2841846520 Bacteria 5345850
148 2841861519 2841859092 Bacteria 5436171
149 2842127812 2842124991 Bacteria 5346824
150 2842132954 2842130223 Bacteria 4909145
151 2842142188 2842140634 Bacteria 5759631
152 2842154947 2842152218 Bacteria 4908957
153 2842173446 2842170452 Bacteria 5525737
154 2842178568 2842175837 Bacteria 4908771
155 2842190141 2842187318 Bacteria 5524014
156 2842214455 2842211629 Bacteria 5523832
157 2842227174 2842224351 Bacteria 5524473
158 2842518215 2842515876 Bacteria 5436280
159 2854897418 2854896431 Bacteria 5869725
160 2854921450 2854916844 Bacteria 5725939
161 2857532862 2857531043 Bacteria 6754041
162 2899792641 2899792073 Bacteria 4926588
163 2899850085 2899845264 Bacteria 5672268
164 2904537731 2904535858 Bacteria 6308016
165 2919117291 2919114240 Bacteria 5700270
166 2919173592 2919171160 Bacteria 6499771
167 2922556922 2922554459 Bacteria 6683962
168 2925331238 2925326138 Bacteria 9652120
169 2926758738 2926754445 Bacteria 5964435
170 2926763731 2926760298 Bacteria 5505990
171 2929141470 2929138655 Bacteria 5810547
172 2929211404 2929206907 Bacteria 5918291
173 2933009670 2933006813 Bacteria 4912075
174 2933013843 2933011516 Bacteria 5439334
175 2933595657 2933594066 Bacteria 5594265
176 2946083540 2946080515 Bacteria 4310960
177 2969768315 2969765954 Bacteria 4216713
178 2979091227 2979089926 Bacteria 5670289
179 2979096751 2979095461 Bacteria 5669583
180 2979102473 2979100975 Bacteria 5423623
181 2984509641 2984509177 Bacteria 5274802
182 2984519660 2984518228 Bacteria 5277463
183 2984537978 2984537506 Bacteria 5277481
184 2996336838 2996336353 Bacteria 5511628
185 3007401509 3007395558 Bacteria 6755444
186 646813436 646564506 Bacteria 3192235
187 650843200 650716007 Bacteria 5573770
188 8002290769 8002285264 Bacteria 6717907
189 8002322699 8002317523 Bacteria 8051857
190 8003572775 8003570095 Bacteria 5747666
191 8046993240 8046991243 Bacteria 8497463
192 JGI25151J46595_10033382
193 rootH2_10055440
194 rootH1_10166522
195 Ga0055526_1000906
196 Ga0055531_10001544
197 Ga0058692_1001955
198 Ga0058692_1002400
199 Ga0055543_1005136
200 Ga0065165_1000153
201 Ga0065165_1000569
202 Ga0068869_100000021
203 Ga0070669_100082206
204 Ga0070714_100190298
205 Ga0070665_100011379
206 Ga0070665_100055950
207 Ga0068854_100195428
208 Ga0075368_10012400
209 Ga0075364_10000619
210 Ga0075369_10060731
211 Ga0075366_10017546
212 Ga0097621_100016803
213 Ga0075370_10029590
214 Ga0075370_10108689
215 Ga0068871_100011905
216 Ga0068865_100031979
217 Ga0079104_1000063
218 Ga0099826_10000590
219 Ga0099826_10006096
220 Ga0105246_10100055
221 Ga0157319_1000016
222 Ga0157373_10013416
223 Ga0157371_10000002
224 Ga0157370_10000143
225 Ga0157380_10075982
226 Ga0209566_101256
227 Ga0209025_1001475
228 Ga0209564_1000008
229 Ga0209758_1000105
230 Ga0209758_1013427
231 Ga0209050_1000297
232 Ga0209050_1005092
233 Ga0209051_1001021
234 Ga0209257_1000984
235 Ga0207689_10000195
236 Ga0207648_10048736
237 Ga0209281_1000110
238 Ga0209371_1000003
239 Ga0209371_1001357
240 Ga0209282_1001047
241 Ga0209282_1030235
242 Ga0209813_10001466
243 Ga0268266_10005338
244 Ga0268256_1000004
245 Ga0316181_1162322
246 Ga0265320_10000819
247 Ga0307408_100002197
248 Ga0265314_10181851
249 Ga0316577_10006772
250 Ga0307406_10001876
251 Ga0307406_10116986
252 Ga0453683_0006321
253 Ga0451576_0035103
254 Ga0495605_0001317
255 Ga0495607_0003139
256 Ga0495607_0014709
257 Ga0495606_0008102
258 Ga0495620_0005670
259 Ga0495643_0000290
260 Ga0495654_0000121
261 Ga0495633_0053033
262 Ga0495588_0001686
263 Ga0495672_0002472
264 Ga0495681_0003679
265 Ga0496108_0039378
266 Ga0496110_0079837
267 Ga0496111_0166102
268 Ga0496116_0010207
269 Ga0496116_0048456
270 Ga0496117_0000016
271 Ga0496117_0027734
272 Ga0496118_0002108
273 Ga0496118_0023918
274 Ga0496120_0000164
275 Ga0496120_0113649
276 Ga0496121_0000003
277 Ga0496121_0000180
278 Ga0496122_0000002
279 Ga0496123_0000002
280 Ga0496123_0037566
281 Ga0496124_0018204
282 Ga0496124_0046918
283 Ga0496124_0075246
284 Ga0496124_0076276
285 Ga0496124_0112058
286 Ga0496125_0000200
287 Ga0496125_0062197
288 Ga0496126_0056179
289 Ga0496126_0213040
290 Ga0501080_0119113
291 nmdc:mga00v17_53_c1
292 nmdc:mga00v17_60228_c1
293 nmdc:mga0yw44_115_c1
294 nmdc:mga06z11_14049_c1
295 nmdc:mga07m45_25418_c2
296 nmdc:mga0sz30_6385_c1
297 Ga0500556_0011256
298 Ga0500560_000068
299 Ga0500618_000171
300 Ga0500561_0000136
301 Ga0500568_0000035
302 Ga0500568_0027117
303 Ga0500616_0001649
304 Ga0500622_0001845
305 Ga0500624_001293
306 Ga0500634_0002361
307 2984604723
308 2511168321
309 2514586434
310 2537875804
311 2540606117
312 2554245393
313 2559296778
314 2566995653
315 2585997298
316 2586001906
317 2599602731
318 2599719964
319 2599973814
320 2601610352
321 2601747318
322 2643917245
323 2644130440
324 2644520905
325 2738888581
326 2739307607
327 2808987231
328 2819557433
329 2819686589
330 2821126301
331 2831865530
332 2838678061
333 2838717033
334 2838722356
335 2838727782
336 2838737223
337 2841842408
338 2841849439
339 2841861519
340 2842127812
341 2842132954
342 2842142188
343 2842154947
344 2842173446
345 2842178568
346 2842190141
347 2842214455
348 2842227174
349 2842518215
350 2854897418
351 2854921450
352 2857532862
353 2899792641
354 2899850085
355 2904537731
356 2919117291
357 2919173592
358 2922556922
359 2925331238
360 2926758738
361 2926763731
362 2929141470
363 2929211404
364 2933009670
365 2933013843
366 2933595657
367 2946083540
368 2969768315
369 2979091227
370 2979096751
371 2979102473
372 2984509641
373 2984519660
374 2984537978
375 2996336838
376 3007401509
377 646813436
378 650843200
379 8002290769
380 8002322699
381 8003572775
382 8046993240

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08713

DNA_alkylation

DNA alkylation repair enzyme

134

269

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vi0-assembly2.cif.gz_B pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an abasic site analog 0.9416 7 365
5vi0-assembly2.cif.gz_B pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna containing an abasic site analog 0.9391 7 365
7zdy-assembly1.cif.gz_Y crystal structure of beta-xylosidase from thermotoga maritima in complex with methyl-beta-d-xylopyranoside 0.8273 255 365
7zgz-assembly1.cif.gz_X crystal structure of beta-xylosidase from thermotoga maritima in complex with methyl-beta-d-xylopyranoside hydrolysed to xylose 0.8252 255 365
6r5n-assembly1.cif.gz_A the crystal structure of glycoside hydrolase bglx from p. aeruginosa in complex with 1-deoxynojirimycin 0.8143 255 364
ID Description Score Start End Superfamily
6m9mA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;ARM repeat domains 0.8375 121 233 1.25.40.290
3l9tA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;ARM repeat domains 0.8336 121 233 1.25.40.290
af_A0A1D6HPB1_249_353_1.25.10.10 Mainly Alpha;Alpha Horseshoe;Leucine-rich Repeat Variant;Leucine-rich Repeat Variant 0.7861 132 229 1.25.10.10
3l9tA02 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;ARM repeat domains 0.7766 121 233 1.25.40.290
4zo6A03 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.7746 257 363 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A4S0FYN7-F1-model_v4 DNA alkylation repair protein 0.9909 266 365
AF-A0A4S0FYN7-F1-model_v4 DNA alkylation repair protein 0.9811 266 365
AF-A0A7W1UNW2-F1-model_v4 DNA alkylation repair protein 0.9808 6 209
AF-A0A523IQG5-F1-model_v4 DNA alkylation repair protein 0.9786 109 250
AF-A0A5S9MK77-F1-model_v4 Uncharacterized protein 0.9757 55 194

Map