F299241

General Info

Members Datasets Scaffolds Average Seq Length
194 146 388 323

Family's Representative Sequence

Representative Sequence 3300049571|Ga0501034_0186956|Ga0501034_0186956_282_1424
Length 367
Sequence METAASNEKRFFERRALPLPKPQAAHPAAMLHRNRHFYLPFFRITRKGDIQMRTPPISSLRRLLVTAGLCALAAAPLGAQAAYPDRPITLIVSAAPGGTTDIAARLIAQPLAKVLGQSVVVAVSRAAPDGYTLLLQYSGYQVITPLITPGLNWDPVKSFTPIANVLSAPQVIVVRPSLPIKSVKELVSYAKAHPGELNYASSGNGSLQQVATELLNQMAGIKTTHIPYKGTGPALADLLSGNVDMTITTPPPLLGQIAAGKLRPLAVTGKKRLDSLPDVPTAAEAGYPDLIVSSWFAMYAPAGTPKAVVDKLAGEIEKIMKTEEFRKKAAEQGAEAVFMGPEELNKYQKDELVRYKTVVEKAGISAN

Samples

Sample ID Description Type Environment
1 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
4 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
5 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
6 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
25 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009988 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
37 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
42 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
44 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
47 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
61 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
66 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
69 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
72 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
73 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
74 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
75 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
76 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
79 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
82 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
83 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
84 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
85 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
86 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
87 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
88 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
89 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
92 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
93 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
94 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
95 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
103 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
104 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
109 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
110 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
111 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
112 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
113 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
114 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
115 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
116 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
117 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
118 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
119 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
120 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
121 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
122 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
123 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
124 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
125 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
126 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
127 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
128 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
129 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
130 2643221569 Achromobacter sp. Root565 Isolate Unclassified
131 2643221594 Achromobacter sp. Root170 Isolate Unclassified
132 2643221621 Achromobacter sp. Root83 Isolate Unclassified
133 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
134 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
135 2840878972 Albibacillus kandeliae J95 Isolate Rhizosphere
136 2855767633 Achromobacter sp. HZ34 Isolate Nodule
137 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
138 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
139 2858688981 Cupriavidus sp. UYMMa02A Isolate Unclassified
140 2881927736 Candidimonas sp. SYP-B2681 Isolate Rhizosphere
141 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
142 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
143 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
144 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
145 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
146 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.69
Metatranscriptomes 0
Isolates 10.31

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 33.51
Nodule 3.09
Rhizoplane 1.03
Rhizosphere 50
Stem 0
Stem Tuber 0
Unclassified 0.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501034_0186956 3300049571 Bacteria 2034
2 JGI25151J46595_10002645 3300003187 Bacteria 10545
3 Ga0055524_1001369 3300003775 Bacteria 14151
4 Ga0055536_1001508 3300003781 Bacteria 13983
5 Ga0055534_1000957 3300003784 Bacteria 12821
6 Ga0055534_1001648 3300003784 Bacteria 8615
7 Ga0055540_1015876 3300003792 Bacteria 2170
8 Ga0055531_10000312 3300003794 Bacteria 47848
9 JGI25405J52794_10005969 3300003911 Bacteria 2217
10 Ga0070670_100022761 3300005331 Bacteria 5393
11 Ga0070680_100069276 3300005336 Bacteria 2897
12 Ga0070680_100188652 3300005336 Bacteria 1737
13 Ga0070675_100010655 3300005354 Bacteria 7187
14 Ga0070685_10203332 3300005466 Bacteria 1289
15 Ga0070679_100332670 3300005530 Bacteria 1467
16 Ga0070665_100520711 3300005548 Bacteria 1201
17 Ga0070664_100149524 3300005564 Bacteria 2061
18 Ga0068864_100003483 3300005618 Bacteria 13006
19 Ga0068863_100020149 3300005841 Bacteria 6380
20 Ga0068862_100076194 3300005844 Bacteria 2903
21 Ga0081455_10004890 3300005937 Bacteria 14850
22 Ga0081455_10026879 3300005937 Bacteria 5283
23 Ga0081538_10049815 3300005981 Bacteria 2537
24 Ga0075365_10002886 3300006038 Bacteria 8656
25 Ga0075365_10011679 3300006038 Bacteria 5174
26 Ga0075365_10045165 3300006038 Bacteria 2889
27 Ga0075365_10180326 3300006038 Bacteria 1476
28 Ga0075365_10295629 3300006038 Bacteria 1139
29 Ga0075363_100101753 3300006048 Bacteria 1590
30 Ga0075364_10005576 3300006051 Bacteria 7335
31 Ga0075364_10006108 3300006051 Bacteria 7055
32 Ga0075364_10010115 3300006051 Bacteria 5689
33 Ga0075364_10227462 3300006051 Bacteria 1267
34 Ga0075369_10000494 3300006186 Bacteria 12240
35 Ga0075369_10011366 3300006186 Bacteria 3502
36 Ga0075366_10126000 3300006195 Bacteria 1545
37 Ga0075428_100085950 3300006844 Bacteria 3431
38 Ga0075430_100035497 3300006846 Bacteria 4230
39 Ga0075430_100078882 3300006846 Bacteria 2760
40 Ga0075431_100029134 3300006847 Bacteria 5680
41 Ga0099826_10000020 3300006948 Bacteria 183920
42 Ga0111539_10110389 3300009094 Bacteria 3227
43 Ga0111539_10687095 3300009094 Bacteria 1191
44 Ga0114129_10514856 3300009147 Bacteria 1561
45 Ga0105243_10000101 3300009148 Bacteria 98298
46 Ga0105242_10149684 3300009176 Unclassified 2034
47 Ga0105242_10435439 3300009176 Bacteria 1232
48 Ga0105035_102087 3300009988 Bacteria 1448
49 Ga0163163_10001257 3300014325 Bacteria 21367
50 Ga0209565_1000092 3300025263 Bacteria 141563
51 Ga0209455_1000795 3300025272 Bacteria 17472
52 Ga0209673_1010895 3300025273 Bacteria 3795
53 Ga0209675_1000809 3300025291 Bacteria 20627
54 Ga0209675_1000951 3300025291 Bacteria 18424
55 Ga0209676_1000012 3300025292 Bacteria 841431
56 Ga0209676_1001997 3300025292 Bacteria 16139
57 Ga0209025_1000548 3300025294 Bacteria 70257
58 Ga0209025_1000892 3300025294 Bacteria 46436
59 Ga0209025_1001053 3300025294 Bacteria 40223
60 Ga0209025_1001159 3300025294 Bacteria 37305
61 Ga0209564_1001095 3300025295 Bacteria 32240
62 Ga0209564_1002067 3300025295 Bacteria 17262
63 Ga0209564_1002203 3300025295 Bacteria 16266
64 Ga0209758_1010717 3300025297 Bacteria 5438
65 Ga0209050_1004549 3300025298 Bacteria 9317
66 Ga0209256_1001280 3300025299 Bacteria 27204
67 Ga0207426_1059363 3300025302 Bacteria 1106
68 Ga0209051_1001437 3300025303 Bacteria 20303
69 Ga0209257_1000015 3300025304 Bacteria 908141
70 Ga0209257_1035029 3300025304 Bacteria 1557
71 Ga0207645_10218162 3300025907 Bacteria 1257
72 Ga0207707_10131751 3300025912 Bacteria 2186
73 Ga0207709_10000103 3300025935 Bacteria 131589
74 Ga0207691_10060178 3300025940 Bacteria 3452
75 Ga0207679_10063592 3300025945 Bacteria 2755
76 Ga0207639_10201179 3300026041 Bacteria 1708
77 Ga0207641_10068672 3300026088 Bacteria 3039
78 Ga0207676_10094920 3300026095 Bacteria 2458
79 Ga0207683_10110832 3300026121 Bacteria 2457
80 Ga0207698_10364506 3300026142 Bacteria 1370
81 Ga0209371_1026532 3300027312 Bacteria 1317
82 Ga0209282_1000045 3300027666 Bacteria 118401
83 Ga0268266_10020097 3300028379 Bacteria 5692
84 Ga0268266_10234910 3300028379 Bacteria 1690
85 Ga0307515_10000257 3300028794 Bacteria 131732
86 Ga0307515_10000472 3300028794 Bacteria 96172
87 Ga0307515_10019963 3300028794 Bacteria 12005
88 Ga0307515_10265059 3300028794 Bacteria 1448
89 Ga0268256_1030164 3300030500 Bacteria 1317
90 Ga0307408_100265264 3300031548 Bacteria 1423
91 Ga0307514_10001925 3300031649 Bacteria 22740
92 Ga0307410_10176458 3300031852 Bacteria 1614
93 Ga0307410_10253530 3300031852 Bacteria 1369
94 Ga0307406_10190359 3300031901 Bacteria 1501
95 Ga0307406_10241651 3300031901 Bacteria 1355
96 Ga0307407_10111206 3300031903 Bacteria 1720
97 Ga0307416_100037207 3300032002 Bacteria 3742
98 Ga0307416_100084936 3300032002 Bacteria 2692
99 Ga0307416_100120792 3300032002 Bacteria 2334
100 Ga0307414_10129682 3300032004 Bacteria 1955
101 Ga0307411_10039089 3300032005 Bacteria 2999
102 Ga0307510_10268420 3300033180 Bacteria 1184
103 Ga0373955_0026499 3300035172 Bacteria 2987
104 Ga0373931_0258970 3300035691 Bacteria 1061
105 Ga0373935_0140548 3300035692 Bacteria 1631
106 Ga0466969_0004457 3300044656 Bacteria 7450
107 Ga0466966_0002420 3300044684 Bacteria 12193
108 Ga0466961_0018529 3300044693 Bacteria 4479
109 Ga0466959_0014166 3300045049 Bacteria 5788
110 Ga0451576_0361054 3300045051 Bacteria 1521
111 Ga0495605_0002620 3300046474 Bacteria 11041
112 Ga0495596_0003319 3300046500 Bacteria 8199
113 Ga0495610_0000402 3300046512 Bacteria 44548
114 Ga0495616_0027516 3300046513 Bacteria 3016
115 Ga0495663_0049078 3300046525 Bacteria 1303
116 Ga0495633_0000903 3300046558 Bacteria 25324
117 Ga0495661_0024161 3300046665 Bacteria 3935
118 Ga0495671_0000949 3300046692 Bacteria 20400
119 Ga0495604_0041979 3300047317 Bacteria 3586
120 Ga0496102_0057351 3300048905 Bacteria 3556
121 Ga0496116_0012327 3300048919 Bacteria 6990
122 Ga0496117_0021597 3300048920 Bacteria 5200
123 Ga0496118_0014972 3300048921 Bacteria 7216
124 Ga0496121_0027429 3300048924 Bacteria 5330
125 Ga0496121_0104354 3300048924 Bacteria 2178
126 Ga0496122_0001089 3300048925 Bacteria 47126
127 Ga0496124_0000013 3300048927 Bacteria 484884
128 Ga0496125_0196094 3300048928 Bacteria 1328
129 Ga0501032_0117786 3300049569 Bacteria 1756
130 Ga0501033_0293934 3300049570 Bacteria 1145
131 Ga0501034_0000530 3300049571 Bacteria 60898
132 Ga0501034_0003601 3300049571 Bacteria 17582
133 Ga0501034_0470880 3300049571 Bacteria 1172
134 Ga0501047_0001163 3300049581 Bacteria 26065
135 Ga0501048_0207702 3300049582 Bacteria 1389
136 Ga0501072_0240886 3300049588 Bacteria 1441
137 Ga0501073_0359131 3300049589 Bacteria 1006
138 Ga0501076_0170926 3300049592 Bacteria 1772
139 Ga0501076_0238789 3300049592 Bacteria 1486
140 Ga0501076_0271870 3300049592 Bacteria 1388
141 Ga0501080_0227817 3300049742 Bacteria 1704
142 Ga0501035_0005278 3300049822 Bacteria 12229
143 Ga0501044_0003984 3300049823 Bacteria 16539
144 nmdc:mga03683_525_c1 3300050489 Bacteria 10966
145 nmdc:mga03683_67098_c1 3300050489 Bacteria 1526
146 nmdc:mga03683_94528_c1 3300050489 Bacteria 1307
147 nmdc:mga00v17_11365_c1 3300050491 Bacteria 4893
148 nmdc:mga00v17_129_c1 3300050491 Bacteria 44201
149 nmdc:mga00v17_149135_c1 3300050491 Bacteria 1502
150 nmdc:mga0yw44_29698_c1 3300050492 Bacteria 3159
151 nmdc:mga0yw44_54386_c1 3300050492 Bacteria 2433
152 nmdc:mga0yw44_7536_c1 3300050492 Bacteria 5361
153 nmdc:mga0yw44_94873_c1 3300050492 Bacteria 1891
154 nmdc:mga0k408_109802_c1 3300050493 Bacteria 1630
155 nmdc:mga0k408_40912_c1 3300050493 Bacteria 2668
156 nmdc:mga07m45_134376_c1 3300050496 Bacteria 1431
157 nmdc:mga0qj67_334904_c1 3300050509 Bacteria 1224
158 nmdc:mga0qj67_77560_c1 3300050509 Bacteria 2658
159 nmdc:mga06r32_485472_c1 3300050510 Bacteria 1213
160 nmdc:mga08y16_102315_c1 3300050511 Bacteria 2982
161 nmdc:mga0sz30_46643_c1 3300050516 Bacteria 1830
162 nmdc:mga0sz30_707_c1 3300050516 Bacteria 12257
163 Ga0500610_0000022 3300053079 Bacteria 60344
164 Ga0500651_0029389 3300053093 Bacteria 3456
165 Ga0500641_0005189 3300053096 Bacteria 4613
166 Ga0500607_000049 3300053121 Bacteria 80941
167 Ga0500590_008407 3300053148 Bacteria 5150
168 Ga0500590_103189 3300053148 Bacteria 1366
169 Ga0500619_000557 3300053154 Bacteria 6373
170 Ga0500634_0011242 3300053161 Bacteria 4611
171 Ga0500552_000036 3300053733 Bacteria 11659
172 Ga0501084_0109124 3300054114 Bacteria 2325
173 Ga0501084_0369360 3300054114 Bacteria 1212
174 Ga0530510_0089625 3300061734 Bacteria 2243
175 2513954966 2513237150 Bacteria 6553639
176 2514041455 2513237165 Bacteria 6771773
177 2599906027 2599185292 Bacteria 6290804
178 2643858955 2643221569 Bacteria 6064337
179 2643981873 2643221594 Bacteria 5811388
180 2644122821 2643221621 Bacteria 6212786
181 2809033938 2808606395 Bacteria 6020352
182 2834643742 2834641062 Bacteria 5559922
183 2840882406 2840878972 Bacteria 5483153
184 2855773056 2855767633 Bacteria 7049357
185 2857539840 2857537821 Bacteria 5248181
186 2857543066 2857542790 Bacteria 5326616
187 2858696837 2858688981 Bacteria 8184122
188 2881929147 2881927736 Bacteria 3993927
189 2904548824 2904541872 Bacteria 8915136
190 2928118213 2928115317 Bacteria 6477646
191 2929166759 2929160207 Bacteria 9075316
192 644748235 644736347 Bacteria 6476522
193 8003403229 8003400568 Bacteria 5535898
194 8048748781 8048746797 Bacteria 3557226
195 Ga0501034_0186956
196 JGI25151J46595_10002645
197 Ga0055524_1001369
198 Ga0055536_1001508
199 Ga0055534_1000957
200 Ga0055534_1001648
201 Ga0055540_1015876
202 Ga0055531_10000312
203 JGI25405J52794_10005969
204 Ga0070670_100022761
205 Ga0070680_100069276
206 Ga0070680_100188652
207 Ga0070675_100010655
208 Ga0070685_10203332
209 Ga0070679_100332670
210 Ga0070665_100520711
211 Ga0070664_100149524
212 Ga0068864_100003483
213 Ga0068863_100020149
214 Ga0068862_100076194
215 Ga0081455_10004890
216 Ga0081455_10026879
217 Ga0081538_10049815
218 Ga0075365_10002886
219 Ga0075365_10011679
220 Ga0075365_10045165
221 Ga0075365_10180326
222 Ga0075365_10295629
223 Ga0075363_100101753
224 Ga0075364_10005576
225 Ga0075364_10006108
226 Ga0075364_10010115
227 Ga0075364_10227462
228 Ga0075369_10000494
229 Ga0075369_10011366
230 Ga0075366_10126000
231 Ga0075428_100085950
232 Ga0075430_100035497
233 Ga0075430_100078882
234 Ga0075431_100029134
235 Ga0099826_10000020
236 Ga0111539_10110389
237 Ga0111539_10687095
238 Ga0114129_10514856
239 Ga0105243_10000101
240 Ga0105242_10149684
241 Ga0105242_10435439
242 Ga0105035_102087
243 Ga0163163_10001257
244 Ga0209565_1000092
245 Ga0209455_1000795
246 Ga0209673_1010895
247 Ga0209675_1000809
248 Ga0209675_1000951
249 Ga0209676_1000012
250 Ga0209676_1001997
251 Ga0209025_1000548
252 Ga0209025_1000892
253 Ga0209025_1001053
254 Ga0209025_1001159
255 Ga0209564_1001095
256 Ga0209564_1002067
257 Ga0209564_1002203
258 Ga0209758_1010717
259 Ga0209050_1004549
260 Ga0209256_1001280
261 Ga0207426_1059363
262 Ga0209051_1001437
263 Ga0209257_1000015
264 Ga0209257_1035029
265 Ga0207645_10218162
266 Ga0207707_10131751
267 Ga0207709_10000103
268 Ga0207691_10060178
269 Ga0207679_10063592
270 Ga0207639_10201179
271 Ga0207641_10068672
272 Ga0207676_10094920
273 Ga0207683_10110832
274 Ga0207698_10364506
275 Ga0209371_1026532
276 Ga0209282_1000045
277 Ga0268266_10020097
278 Ga0268266_10234910
279 Ga0307515_10000257
280 Ga0307515_10000472
281 Ga0307515_10019963
282 Ga0307515_10265059
283 Ga0268256_1030164
284 Ga0307408_100265264
285 Ga0307514_10001925
286 Ga0307410_10176458
287 Ga0307410_10253530
288 Ga0307406_10190359
289 Ga0307406_10241651
290 Ga0307407_10111206
291 Ga0307416_100037207
292 Ga0307416_100084936
293 Ga0307416_100120792
294 Ga0307414_10129682
295 Ga0307411_10039089
296 Ga0307510_10268420
297 Ga0373955_0026499
298 Ga0373931_0258970
299 Ga0373935_0140548
300 Ga0466969_0004457
301 Ga0466966_0002420
302 Ga0466961_0018529
303 Ga0466959_0014166
304 Ga0451576_0361054
305 Ga0495605_0002620
306 Ga0495596_0003319
307 Ga0495610_0000402
308 Ga0495616_0027516
309 Ga0495663_0049078
310 Ga0495633_0000903
311 Ga0495661_0024161
312 Ga0495671_0000949
313 Ga0495604_0041979
314 Ga0496102_0057351
315 Ga0496116_0012327
316 Ga0496117_0021597
317 Ga0496118_0014972
318 Ga0496121_0027429
319 Ga0496121_0104354
320 Ga0496122_0001089
321 Ga0496124_0000013
322 Ga0496125_0196094
323 Ga0501032_0117786
324 Ga0501033_0293934
325 Ga0501034_0000530
326 Ga0501034_0003601
327 Ga0501034_0470880
328 Ga0501047_0001163
329 Ga0501048_0207702
330 Ga0501072_0240886
331 Ga0501073_0359131
332 Ga0501076_0170926
333 Ga0501076_0238789
334 Ga0501076_0271870
335 Ga0501080_0227817
336 Ga0501035_0005278
337 Ga0501044_0003984
338 nmdc:mga03683_525_c1
339 nmdc:mga03683_67098_c1
340 nmdc:mga03683_94528_c1
341 nmdc:mga00v17_11365_c1
342 nmdc:mga00v17_129_c1
343 nmdc:mga00v17_149135_c1
344 nmdc:mga0yw44_29698_c1
345 nmdc:mga0yw44_54386_c1
346 nmdc:mga0yw44_7536_c1
347 nmdc:mga0yw44_94873_c1
348 nmdc:mga0k408_109802_c1
349 nmdc:mga0k408_40912_c1
350 nmdc:mga07m45_134376_c1
351 nmdc:mga0qj67_334904_c1
352 nmdc:mga0qj67_77560_c1
353 nmdc:mga06r32_485472_c1
354 nmdc:mga08y16_102315_c1
355 nmdc:mga0sz30_46643_c1
356 nmdc:mga0sz30_707_c1
357 Ga0500610_0000022
358 Ga0500651_0029389
359 Ga0500641_0005189
360 Ga0500607_000049
361 Ga0500590_008407
362 Ga0500590_103189
363 Ga0500619_000557
364 Ga0500634_0011242
365 Ga0500552_000036
366 Ga0501084_0109124
367 Ga0501084_0369360
368 Ga0530510_0089625
369 2513954966
370 2514041455
371 2599906027
372 2643858955
373 2643981873
374 2644122821
375 2809033938
376 2834643742
377 2840882406
378 2855773056
379 2857539840
380 2857543066
381 2858696837
382 2881929147
383 2904548824
384 2928118213
385 2929166759
386 644748235
387 8003403229
388 8048748781

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

103

364

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
8hkb-assembly1.cif.gz_A tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d 0.9622 27 317
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9611 22 319
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9525 23 317
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.9522 23 317
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9518 22 319
ID Description Score Start End Superfamily
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9384 122 239 3.40.190.10
2dvzA01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9298 22 317 3.40.190.150
2f5xC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9252 23 317 3.40.190.150
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9217 122 244 3.40.190.10
2qpqC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9211 122 244 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A533IWB4-F1-model_v4 deleted 0.9904 22 98
AF-A0A537DML3-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9757 31 317
AF-A0A4Q7NH98-F1-model_v4 Tripartite-type tricarboxylate transporter receptor subunit TctC 0.9701 17 319
AF-A0A1W6ZRV1-F1-model_v4 LacI family transcriptional regulator 0.9698 17 319
AF-A0A5C8CF86-F1-model_v4 deleted 0.969 34 317

Map