F300090
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 195 | 151 | 390 | 290 |
Family's Representative Sequence
| Representative Sequence | 3300013105|Ga0157369_10553979|Ga0157369_105539792 |
| Length | 308 |
| Sequence | MTILVSGKNGQLGKELQDIASSHENLQFIFFDREELNIADNASLQAAFQKYSPSVFINCAAYTAVDKAETEQEKAFRINAEAVSNIAKNCRQFKTKLVHISTDYVFDGRATQPYNEDDKTDPVNYYGYTKWLGEQLALNNNPDTIVIRTSWVYSTYGNNFVKTMLRLMKERKEINVVNDQLGSPTYAKDLAEAIMSIVNGQWSMVNDEAVNRESSNVNLQSQETHHSPLTTNIYHFSNEGIISWYDFAVAIKEIKHLDCIVNPIPTTAYPTPAKRPAYSVFDKTKIKNTFNIQLKEWRDSLSLCLQHL |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 2 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 3 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 4 | 3300001989 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 | Metagenome | Rhizosphere |
| 5 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 6 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 7 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 8 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 9 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 10 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 11 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 12 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 13 | 3300003761 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 | Metagenome | Endosphere |
| 14 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 15 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 16 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 17 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 18 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 19 | 3300004625 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 | Metagenome | Endosphere |
| 20 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 21 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 22 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 24 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 25 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 26 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 27 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 30 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 31 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 33 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 34 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 35 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 36 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 37 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 38 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 39 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 40 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 41 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 42 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 43 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 48 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 55 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 56 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 57 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 58 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 59 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 60 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 61 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 62 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 63 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 64 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 65 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 66 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 67 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 68 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 84 | 3300030522 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM | Metagenome | Unclassified |
| 85 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 86 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 87 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 88 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 89 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 90 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 91 | 3300041404 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 | Metagenome | Rhizosphere |
| 92 | 3300041406 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 | Metagenome | Rhizosphere |
| 93 | 3300041486 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG | Metagenome | Rhizoplane |
| 94 | 3300041997 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 | Metagenome | Rhizosphere |
| 95 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 96 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 97 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 98 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 99 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 100 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 101 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 102 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 103 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 104 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 109 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 110 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 111 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 112 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 113 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 114 | 3300049758 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought | Metagenome | Rhizosphere |
| 115 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 117 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 118 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 119 | 3300053090 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere | Metagenome | Endosphere |
| 120 | 3300053092 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere | Metagenome | Endosphere |
| 121 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 122 | 3300053108 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere | Metagenome | Endosphere |
| 123 | 3300053109 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere | Metagenome | Endosphere |
| 124 | 3300053121 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere | Metagenome | Endosphere |
| 125 | 3300053131 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere | Metagenome | Endosphere |
| 126 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 127 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 128 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 129 | 3300053142 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere | Metagenome | Endosphere |
| 130 | 3300053147 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere | Metagenome | Endosphere |
| 131 | 3300053148 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere | Metagenome | Endosphere |
| 132 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 133 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 134 | 3300053160 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere | Metagenome | Endosphere |
| 135 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 136 | 2818991444 | Filimonas endophytica 3197 | Isolate | Unclassified |
| 137 | 2818991460 | Chitinophaga polysaccharea 1209 | Isolate | Unclassified |
| 138 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 139 | 2884791551 | Chitinophaga oryzae 1310 | Isolate | Unclassified |
| 140 | 2896317667 | Sphingobacterium sp. SGR-19 | Isolate | Rhizosphere |
| 141 | 2898713307 | Sphingobacterium sp. SGG-5 | Isolate | Rhizosphere |
| 142 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 143 | 2904780799 | Sphingobacterium sp. 1304 | Isolate | Rhizosphere |
| 144 | 2919177583 | Sphingobacterium sp. 2149 | Isolate | Rhizosphere |
| 145 | 2929154850 | Filimonas sp. R-72421 Hybrid assembly | Isolate | Unclassified |
| 146 | 2929177148 | Chitinophaga sp. R-72269 Hybrid assembly | Isolate | Unclassified |
| 147 | 2929239360 | Chitinophaga sp. R-73072 Hybrid assembly | Isolate | Unclassified |
| 148 | 2929921140 | Chitinophaga sp. R-72609 Hybrid assembly | Isolate | Unclassified |
| 149 | 2945977869 | Chitinophaga sp. W2I13 | Isolate | Rhizosphere |
| 150 | 2946013367 | Chitinophaga sp. W3I9 | Isolate | Rhizosphere |
| 151 | 8003151029 | Chitinophaga sp. GbtcB8 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 91.28 |
| Metatranscriptomes | 0 |
| Isolates | 8.72 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 27.18 |
| Nodule | 0 |
| Rhizoplane | 0.51 |
| Rhizosphere | 53.33 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 3.59 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0157369_10553979 | 3300013105 | Bacteria | 1188 |
| 2 | SwRhRL2b_contig_2511378 | 2162886007 | Bacteria | 1551 |
| 3 | JGI24740J21852_10003694 | 3300001979 | Bacteria | 6668 |
| 4 | JGI24739J22299_10002519 | 3300001989 | Bacteria | 7064 |
| 5 | JGI24737J22298_10047622 | 3300001990 | Bacteria | 1306 |
| 6 | JGI25154J39366_1000001 | 3300002738 | Bacteria | 483450 |
| 7 | JGI25153J46596_10000209 | 3300003215 | Bacteria | 52915 |
| 8 | rootH1_10190630 | 3300003316 | Bacteria | 1130 |
| 9 | rootH2_10037436 | 3300003320 | Bacteria | 5523 |
| 10 | rootH2_10169017 | 3300003320 | Bacteria | 2944 |
| 11 | rootH2_10194414 | 3300003320 | Unclassified | 2376 |
| 12 | rootL2_10060315 | 3300003322 | Bacteria | 4115 |
| 13 | rootL2_10073425 | 3300003322 | Bacteria | 10286 |
| 14 | rootL2_10161783 | 3300003322 | Bacteria | 1884 |
| 15 | rootL2_10165814 | 3300003322 | Bacteria | 1417 |
| 16 | rootL2_10165815 | 3300003322 | Bacteria | 4879 |
| 17 | rootL2_10241845 | 3300003322 | Bacteria | 1622 |
| 18 | rootL2_10241846 | 3300003322 | Bacteria | 2023 |
| 19 | rootL2_10362531 | 3300003322 | Bacteria | 1346 |
| 20 | rootH1_10027127 | 3300003323 | Bacteria | 41560 |
| 21 | rootH1_10043692 | 3300003323 | Bacteria | 17024 |
| 22 | JGI25160J50197_1014158 | 3300003354 | Bacteria | 2681 |
| 23 | JGI25160J50197_1017456 | 3300003354 | Bacteria | 2273 |
| 24 | Ga0055535_1004733 | 3300003761 | Bacteria | 3202 |
| 25 | Ga0055542_1003720 | 3300003762 | Bacteria | 3987 |
| 26 | Ga0055526_1013843 | 3300003771 | Bacteria | 3373 |
| 27 | Ga0055528_1000308 | 3300003790 | Bacteria | 41407 |
| 28 | Ga0055528_1000809 | 3300003790 | Bacteria | 21549 |
| 29 | Ga0055530_10000385 | 3300003791 | Bacteria | 39749 |
| 30 | Ga0055531_10000027 | 3300003794 | Bacteria | 160284 |
| 31 | Ga0055543_1005820 | 3300004625 | Bacteria | 3087 |
| 32 | Ga0065165_1000053 | 3300005262 | Bacteria | 189081 |
| 33 | Ga0065704_10101346 | 3300005289 | Bacteria | 2240 |
| 34 | Ga0070676_10005721 | 3300005328 | Bacteria | 6625 |
| 35 | Ga0070683_100286387 | 3300005329 | Bacteria | 1567 |
| 36 | Ga0068869_100076841 | 3300005334 | Bacteria | 2483 |
| 37 | Ga0070682_100081798 | 3300005337 | Bacteria | 2092 |
| 38 | Ga0070675_100302829 | 3300005354 | Bacteria | 1409 |
| 39 | Ga0070659_100026389 | 3300005366 | Bacteria | 4470 |
| 40 | Ga0070659_100036322 | 3300005366 | Bacteria | 3841 |
| 41 | Ga0070667_100036339 | 3300005367 | Bacteria | 4130 |
| 42 | Ga0068867_100003111 | 3300005459 | Bacteria | 11700 |
| 43 | Ga0070679_100102393 | 3300005530 | Bacteria | 2849 |
| 44 | Ga0070693_100080274 | 3300005547 | Bacteria | 1943 |
| 45 | Ga0068855_100099357 | 3300005563 | Bacteria | 3352 |
| 46 | Ga0068857_100092965 | 3300005577 | Bacteria | 2701 |
| 47 | Ga0068852_100256401 | 3300005616 | Bacteria | 1677 |
| 48 | Ga0068859_100001403 | 3300005617 | Bacteria | 24458 |
| 49 | Ga0068864_100185519 | 3300005618 | Bacteria | 1904 |
| 50 | Ga0068866_10009735 | 3300005718 | Bacteria | 4092 |
| 51 | Ga0068861_100081018 | 3300005719 | Bacteria | 2540 |
| 52 | Ga0068861_100674895 | 3300005719 | Bacteria | 957 |
| 53 | Ga0068851_10147052 | 3300005834 | Bacteria | 1286 |
| 54 | Ga0068860_100022405 | 3300005843 | Bacteria | 6110 |
| 55 | Ga0068862_100213371 | 3300005844 | Bacteria | 1745 |
| 56 | Ga0075366_10031217 | 3300006195 | Bacteria | 3135 |
| 57 | Ga0075366_10045785 | 3300006195 | Bacteria | 2592 |
| 58 | Ga0097620_100001403 | 3300006931 | Bacteria | 24458 |
| 59 | Ga0114129_10005196 | 3300009147 | Bacteria | 18339 |
| 60 | Ga0105243_10166334 | 3300009148 | Bacteria | 1906 |
| 61 | Ga0105242_10070975 | 3300009176 | Bacteria | 2889 |
| 62 | Ga0105239_10009606 | 3300010375 | Bacteria | 10882 |
| 63 | Ga0105239_10056612 | 3300010375 | Bacteria | 4301 |
| 64 | Ga0105239_10184915 | 3300010375 | Unclassified | 2332 |
| 65 | Ga0105239_10428028 | 3300010375 | Bacteria | 1500 |
| 66 | Ga0157371_10141251 | 3300013102 | Bacteria | 1715 |
| 67 | Ga0157370_10090259 | 3300013104 | Bacteria | 2877 |
| 68 | Ga0157369_10048710 | 3300013105 | Bacteria | 4597 |
| 69 | Ga0157374_10157581 | 3300013296 | Bacteria | 2210 |
| 70 | Ga0157374_10354046 | 3300013296 | Bacteria | 1459 |
| 71 | Ga0157378_10002163 | 3300013297 | Bacteria | 17451 |
| 72 | Ga0157378_10024628 | 3300013297 | Bacteria | 5298 |
| 73 | Ga0157378_10037125 | 3300013297 | Bacteria | 4314 |
| 74 | Ga0163162_10000795 | 3300013306 | Bacteria | 29353 |
| 75 | Ga0163162_10386182 | 3300013306 | Unclassified | 1533 |
| 76 | Ga0157372_10169407 | 3300013307 | Bacteria | 2526 |
| 77 | Ga0157372_10289948 | 3300013307 | Bacteria | 1903 |
| 78 | Ga0182005_1000081 | 3300015265 | Bacteria | 73899 |
| 79 | Ga0213876_10011427 | 3300021384 | Bacteria | 4740 |
| 80 | Ga0209436_100566 | 3300025208 | Bacteria | 15905 |
| 81 | Ga0209258_100041 | 3300025242 | Bacteria | 381381 |
| 82 | Ga0209646_1000002 | 3300025246 | Bacteria | 1425781 |
| 83 | Ga0209026_1000233 | 3300025250 | Bacteria | 74825 |
| 84 | Ga0209148_1000090 | 3300025254 | Bacteria | 250982 |
| 85 | Ga0209673_1000034 | 3300025273 | Bacteria | 328788 |
| 86 | Ga0209130_1001027 | 3300025284 | Bacteria | 21399 |
| 87 | Ga0209564_1007361 | 3300025295 | Bacteria | 5700 |
| 88 | Ga0209564_1017740 | 3300025295 | Bacteria | 2754 |
| 89 | Ga0209758_1000419 | 3300025297 | Bacteria | 72133 |
| 90 | Ga0209758_1010230 | 3300025297 | Bacteria | 5654 |
| 91 | Ga0209758_1016150 | 3300025297 | Bacteria | 3808 |
| 92 | Ga0209758_1017026 | 3300025297 | Bacteria | 3650 |
| 93 | Ga0209050_1000353 | 3300025298 | Bacteria | 88509 |
| 94 | Ga0207426_1000177 | 3300025302 | Bacteria | 159426 |
| 95 | Ga0207426_1000324 | 3300025302 | Bacteria | 91661 |
| 96 | Ga0207426_1000592 | 3300025302 | Bacteria | 47901 |
| 97 | Ga0209257_1000001 | 3300025304 | Bacteria | 2274655 |
| 98 | Ga0209257_1001792 | 3300025304 | Bacteria | 23622 |
| 99 | Ga0207649_10319758 | 3300025920 | Bacteria | 1140 |
| 100 | Ga0207652_10139406 | 3300025921 | Bacteria | 2168 |
| 101 | Ga0207690_10008420 | 3300025932 | Bacteria | 6123 |
| 102 | Ga0207690_10278679 | 3300025932 | Bacteria | 1301 |
| 103 | Ga0207686_10108611 | 3300025934 | Bacteria | 1867 |
| 104 | Ga0207669_10253708 | 3300025937 | Bacteria | 1311 |
| 105 | Ga0207689_10028535 | 3300025942 | Bacteria | 4669 |
| 106 | Ga0207661_10056662 | 3300025944 | Bacteria | 3147 |
| 107 | Ga0207667_10028462 | 3300025949 | Bacteria | 6070 |
| 108 | Ga0207658_10079152 | 3300025986 | Bacteria | 2513 |
| 109 | Ga0207641_10017838 | 3300026088 | Bacteria | 5816 |
| 110 | Ga0207648_10000653 | 3300026089 | Bacteria | 38843 |
| 111 | Ga0207676_10369873 | 3300026095 | Bacteria | 1331 |
| 112 | Ga0207675_100304134 | 3300026118 | Bacteria | 1554 |
| 113 | Ga0268265_10114481 | 3300028380 | Bacteria | 2209 |
| 114 | Ga0268265_10204963 | 3300028380 | Unclassified | 1714 |
| 115 | Ga0268264_10003011 | 3300028381 | Bacteria | 14612 |
| 116 | Ga0268264_10030622 | 3300028381 | Bacteria | 4411 |
| 117 | Ga0307515_10246204 | 3300028794 | Bacteria | 1549 |
| 118 | Ga0307512_10205397 | 3300030522 | Unclassified | 1058 |
| 119 | Ga0265327_10000054 | 3300031251 | Bacteria | 250337 |
| 120 | Ga0307513_10055529 | 3300031456 | Bacteria | 4237 |
| 121 | Ga0307513_10131661 | 3300031456 | Bacteria | 2446 |
| 122 | Ga0307513_10299643 | 3300031456 | Bacteria | 1375 |
| 123 | Ga0395899_0001461 | 3300037312 | Bacteria | 20134 |
| 124 | Ga0395900_0002994 | 3300037418 | Bacteria | 18381 |
| 125 | Ga0395900_0017893 | 3300037418 | Bacteria | 7233 |
| 126 | Ga0395898_0001093 | 3300037466 | Bacteria | 41845 |
| 127 | Ga0436365_0743066 | 3300039437 | Bacteria | 16060 |
| 128 | Ga0439436_0008281 | 3300041404 | Bacteria | 3195 |
| 129 | Ga0439439_0005521 | 3300041406 | Bacteria | 2891 |
| 130 | Ga0451807_1653131 | 3300041486 | Bacteria | 1127 |
| 131 | Ga0439431_0061521 | 3300041997 | Unclassified | 989 |
| 132 | Ga0439457_002683 | 3300042014 | Bacteria | 5012 |
| 133 | Ga0439457_023571 | 3300042014 | Bacteria | 1362 |
| 134 | Ga0466969_0004518 | 3300044656 | Bacteria | 7409 |
| 135 | Ga0466972_0069050 | 3300044658 | Bacteria | 1688 |
| 136 | Ga0466965_0055007 | 3300044683 | Bacteria | 1980 |
| 137 | Ga0466966_0000030 | 3300044684 | Bacteria | 103300 |
| 138 | Ga0466968_0082413 | 3300044735 | Bacteria | 1416 |
| 139 | Ga0466970_0096147 | 3300044765 | Bacteria | 1611 |
| 140 | Ga0466957_0005372 | 3300044842 | Bacteria | 7192 |
| 141 | Ga0466959_0000269 | 3300045049 | Bacteria | 31896 |
| 142 | Ga0466959_0041407 | 3300045049 | Bacteria | 3401 |
| 143 | Ga0495627_028013 | 3300046453 | Bacteria | 1802 |
| 144 | Ga0495633_0000175 | 3300046558 | Bacteria | 83653 |
| 145 | Ga0495668_0014109 | 3300046616 | Bacteria | 4694 |
| 146 | Ga0495674_0392859 | 3300047319 | Bacteria | 1121 |
| 147 | Ga0496121_0000030 | 3300048924 | Bacteria | 412079 |
| 148 | Ga0496126_0008948 | 3300048929 | Bacteria | 10722 |
| 149 | Ga0501033_0344680 | 3300049570 | Bacteria | 1044 |
| 150 | Ga0501037_0039818 | 3300049573 | Bacteria | 3459 |
| 151 | Ga0501047_0132158 | 3300049581 | Bacteria | 2376 |
| 152 | Ga0501047_0180723 | 3300049581 | Bacteria | 1976 |
| 153 | Ga0501080_0464773 | 3300049742 | Bacteria | 1133 |
| 154 | Ga0501241_000727 | 3300049758 | Bacteria | 7122 |
| 155 | Ga0501044_0431276 | 3300049823 | Bacteria | 1227 |
| 156 | nmdc:mga0k408_54257_c1 | 3300050493 | Bacteria | 2323 |
| 157 | nmdc:mga05p37_3553_c1 | 3300050507 | Bacteria | 18203 |
| 158 | Ga0500644_0000182 | 3300053088 | Bacteria | 40141 |
| 159 | Ga0500644_0052307 | 3300053088 | Unclassified | 1406 |
| 160 | Ga0500644_0053708 | 3300053088 | Bacteria | 1392 |
| 161 | Ga0500646_0008633 | 3300053090 | Bacteria | 2608 |
| 162 | Ga0500646_0009602 | 3300053090 | Bacteria | 2476 |
| 163 | Ga0500583_0001301 | 3300053092 | Bacteria | 7130 |
| 164 | Ga0500583_0002176 | 3300053092 | Bacteria | 5822 |
| 165 | Ga0500651_0045584 | 3300053093 | Bacteria | 2758 |
| 166 | Ga0500562_000008 | 3300053108 | Bacteria | 188332 |
| 167 | Ga0500569_000784 | 3300053109 | Bacteria | 5565 |
| 168 | Ga0500607_096281 | 3300053121 | Bacteria | 1479 |
| 169 | Ga0500652_003516 | 3300053131 | Bacteria | 4754 |
| 170 | Ga0500658_0002862 | 3300053134 | Bacteria | 6622 |
| 171 | Ga0500559_0005004 | 3300053136 | Bacteria | 6153 |
| 172 | Ga0500568_0075272 | 3300053139 | Bacteria | 1287 |
| 173 | Ga0500577_0000633 | 3300053142 | Bacteria | 9007 |
| 174 | Ga0500589_087434 | 3300053147 | Bacteria | 1380 |
| 175 | Ga0500590_064656 | 3300053148 | Bacteria | 1831 |
| 176 | Ga0500616_0015819 | 3300053153 | Bacteria | 4307 |
| 177 | Ga0500622_0000852 | 3300053156 | Bacteria | 26070 |
| 178 | Ga0500633_0009908 | 3300053160 | Bacteria | 2525 |
| 179 | 2819573230 | 2818991442 | Bacteria | 8318214 |
| 180 | 2819586795 | 2818991444 | Bacteria | 6968812 |
| 181 | 2819681938 | 2818991460 | Bacteria | 7595395 |
| 182 | 2821136650 | 2821136567 | Bacteria | 8080116 |
| 183 | 2884795985 | 2884791551 | Bacteria | 8511252 |
| 184 | 2896318959 | 2896317667 | Bacteria | 4606601 |
| 185 | 2898713795 | 2898713307 | Bacteria | 4110805 |
| 186 | 2904468605 | 2904467357 | Bacteria | 8057758 |
| 187 | 2904782575 | 2904780799 | Bacteria | 5840761 |
| 188 | 2919178262 | 2919177583 | Bacteria | 5641607 |
| 189 | 2929155481 | 2929154850 | Bacteria | 6753285 |
| 190 | 2929178506 | 2929177148 | Bacteria | 7883697 |
| 191 | 2929240839 | 2929239360 | Bacteria | 7745570 |
| 192 | 2929922880 | 2929921140 | Bacteria | 8649150 |
| 193 | 2945980906 | 2945977869 | Bacteria | 7777518 |
| 194 | 2946019692 | 2946013367 | Bacteria | 7766675 |
| 195 | 8003154706 | 8003151029 | Bacteria | 8187759 |
| 196 | Ga0157369_10553979 | |||
| 197 | SwRhRL2b_contig_2511378 | |||
| 198 | JGI24740J21852_10003694 | |||
| 199 | JGI24739J22299_10002519 | |||
| 200 | JGI24737J22298_10047622 | |||
| 201 | JGI25154J39366_1000001 | |||
| 202 | JGI25153J46596_10000209 | |||
| 203 | rootH1_10190630 | |||
| 204 | rootH2_10037436 | |||
| 205 | rootH2_10169017 | |||
| 206 | rootH2_10194414 | |||
| 207 | rootL2_10060315 | |||
| 208 | rootL2_10073425 | |||
| 209 | rootL2_10161783 | |||
| 210 | rootL2_10165814 | |||
| 211 | rootL2_10165815 | |||
| 212 | rootL2_10241845 | |||
| 213 | rootL2_10241846 | |||
| 214 | rootL2_10362531 | |||
| 215 | rootH1_10027127 | |||
| 216 | rootH1_10043692 | |||
| 217 | JGI25160J50197_1014158 | |||
| 218 | JGI25160J50197_1017456 | |||
| 219 | Ga0055535_1004733 | |||
| 220 | Ga0055542_1003720 | |||
| 221 | Ga0055526_1013843 | |||
| 222 | Ga0055528_1000308 | |||
| 223 | Ga0055528_1000809 | |||
| 224 | Ga0055530_10000385 | |||
| 225 | Ga0055531_10000027 | |||
| 226 | Ga0055543_1005820 | |||
| 227 | Ga0065165_1000053 | |||
| 228 | Ga0065704_10101346 | |||
| 229 | Ga0070676_10005721 | |||
| 230 | Ga0070683_100286387 | |||
| 231 | Ga0068869_100076841 | |||
| 232 | Ga0070682_100081798 | |||
| 233 | Ga0070675_100302829 | |||
| 234 | Ga0070659_100026389 | |||
| 235 | Ga0070659_100036322 | |||
| 236 | Ga0070667_100036339 | |||
| 237 | Ga0068867_100003111 | |||
| 238 | Ga0070679_100102393 | |||
| 239 | Ga0070693_100080274 | |||
| 240 | Ga0068855_100099357 | |||
| 241 | Ga0068857_100092965 | |||
| 242 | Ga0068852_100256401 | |||
| 243 | Ga0068859_100001403 | |||
| 244 | Ga0068864_100185519 | |||
| 245 | Ga0068866_10009735 | |||
| 246 | Ga0068861_100081018 | |||
| 247 | Ga0068861_100674895 | |||
| 248 | Ga0068851_10147052 | |||
| 249 | Ga0068860_100022405 | |||
| 250 | Ga0068862_100213371 | |||
| 251 | Ga0075366_10031217 | |||
| 252 | Ga0075366_10045785 | |||
| 253 | Ga0097620_100001403 | |||
| 254 | Ga0114129_10005196 | |||
| 255 | Ga0105243_10166334 | |||
| 256 | Ga0105242_10070975 | |||
| 257 | Ga0105239_10009606 | |||
| 258 | Ga0105239_10056612 | |||
| 259 | Ga0105239_10184915 | |||
| 260 | Ga0105239_10428028 | |||
| 261 | Ga0157371_10141251 | |||
| 262 | Ga0157370_10090259 | |||
| 263 | Ga0157369_10048710 | |||
| 264 | Ga0157374_10157581 | |||
| 265 | Ga0157374_10354046 | |||
| 266 | Ga0157378_10002163 | |||
| 267 | Ga0157378_10024628 | |||
| 268 | Ga0157378_10037125 | |||
| 269 | Ga0163162_10000795 | |||
| 270 | Ga0163162_10386182 | |||
| 271 | Ga0157372_10169407 | |||
| 272 | Ga0157372_10289948 | |||
| 273 | Ga0182005_1000081 | |||
| 274 | Ga0213876_10011427 | |||
| 275 | Ga0209436_100566 | |||
| 276 | Ga0209258_100041 | |||
| 277 | Ga0209646_1000002 | |||
| 278 | Ga0209026_1000233 | |||
| 279 | Ga0209148_1000090 | |||
| 280 | Ga0209673_1000034 | |||
| 281 | Ga0209130_1001027 | |||
| 282 | Ga0209564_1007361 | |||
| 283 | Ga0209564_1017740 | |||
| 284 | Ga0209758_1000419 | |||
| 285 | Ga0209758_1010230 | |||
| 286 | Ga0209758_1016150 | |||
| 287 | Ga0209758_1017026 | |||
| 288 | Ga0209050_1000353 | |||
| 289 | Ga0207426_1000177 | |||
| 290 | Ga0207426_1000324 | |||
| 291 | Ga0207426_1000592 | |||
| 292 | Ga0209257_1000001 | |||
| 293 | Ga0209257_1001792 | |||
| 294 | Ga0207649_10319758 | |||
| 295 | Ga0207652_10139406 | |||
| 296 | Ga0207690_10008420 | |||
| 297 | Ga0207690_10278679 | |||
| 298 | Ga0207686_10108611 | |||
| 299 | Ga0207669_10253708 | |||
| 300 | Ga0207689_10028535 | |||
| 301 | Ga0207661_10056662 | |||
| 302 | Ga0207667_10028462 | |||
| 303 | Ga0207658_10079152 | |||
| 304 | Ga0207641_10017838 | |||
| 305 | Ga0207648_10000653 | |||
| 306 | Ga0207676_10369873 | |||
| 307 | Ga0207675_100304134 | |||
| 308 | Ga0268265_10114481 | |||
| 309 | Ga0268265_10204963 | |||
| 310 | Ga0268264_10003011 | |||
| 311 | Ga0268264_10030622 | |||
| 312 | Ga0307515_10246204 | |||
| 313 | Ga0307512_10205397 | |||
| 314 | Ga0265327_10000054 | |||
| 315 | Ga0307513_10055529 | |||
| 316 | Ga0307513_10131661 | |||
| 317 | Ga0307513_10299643 | |||
| 318 | Ga0395899_0001461 | |||
| 319 | Ga0395900_0002994 | |||
| 320 | Ga0395900_0017893 | |||
| 321 | Ga0395898_0001093 | |||
| 322 | Ga0436365_0743066 | |||
| 323 | Ga0439436_0008281 | |||
| 324 | Ga0439439_0005521 | |||
| 325 | Ga0451807_1653131 | |||
| 326 | Ga0439431_0061521 | |||
| 327 | Ga0439457_002683 | |||
| 328 | Ga0439457_023571 | |||
| 329 | Ga0466969_0004518 | |||
| 330 | Ga0466972_0069050 | |||
| 331 | Ga0466965_0055007 | |||
| 332 | Ga0466966_0000030 | |||
| 333 | Ga0466968_0082413 | |||
| 334 | Ga0466970_0096147 | |||
| 335 | Ga0466957_0005372 | |||
| 336 | Ga0466959_0000269 | |||
| 337 | Ga0466959_0041407 | |||
| 338 | Ga0495627_028013 | |||
| 339 | Ga0495633_0000175 | |||
| 340 | Ga0495668_0014109 | |||
| 341 | Ga0495674_0392859 | |||
| 342 | Ga0496121_0000030 | |||
| 343 | Ga0496126_0008948 | |||
| 344 | Ga0501033_0344680 | |||
| 345 | Ga0501037_0039818 | |||
| 346 | Ga0501047_0132158 | |||
| 347 | Ga0501047_0180723 | |||
| 348 | Ga0501080_0464773 | |||
| 349 | Ga0501241_000727 | |||
| 350 | Ga0501044_0431276 | |||
| 351 | nmdc:mga0k408_54257_c1 | |||
| 352 | nmdc:mga05p37_3553_c1 | |||
| 353 | Ga0500644_0000182 | |||
| 354 | Ga0500644_0052307 | |||
| 355 | Ga0500644_0053708 | |||
| 356 | Ga0500646_0008633 | |||
| 357 | Ga0500646_0009602 | |||
| 358 | Ga0500583_0001301 | |||
| 359 | Ga0500583_0002176 | |||
| 360 | Ga0500651_0045584 | |||
| 361 | Ga0500562_000008 | |||
| 362 | Ga0500569_000784 | |||
| 363 | Ga0500607_096281 | |||
| 364 | Ga0500652_003516 | |||
| 365 | Ga0500658_0002862 | |||
| 366 | Ga0500559_0005004 | |||
| 367 | Ga0500568_0075272 | |||
| 368 | Ga0500577_0000633 | |||
| 369 | Ga0500589_087434 | |||
| 370 | Ga0500590_064656 | |||
| 371 | Ga0500616_0015819 | |||
| 372 | Ga0500622_0000852 | |||
| 373 | Ga0500633_0009908 | |||
| 374 | 2819573230 | |||
| 375 | 2819586795 | |||
| 376 | 2819681938 | |||
| 377 | 2821136650 | |||
| 378 | 2884795985 | |||
| 379 | 2896318959 | |||
| 380 | 2898713795 | |||
| 381 | 2904468605 | |||
| 382 | 2904782575 | |||
| 383 | 2919178262 | |||
| 384 | 2929155481 | |||
| 385 | 2929178506 | |||
| 386 | 2929240839 | |||
| 387 | 2929922880 | |||
| 388 | 2945980906 | |||
| 389 | 2946019692 | |||
| 390 | 8003154706 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1vl0-assembly1.cif.gz_B | crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution | 0.9676 | 1 | 283 |
| 3sc6-assembly6.cif.gz_F | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.9643 | 2 | 281 |
| 3sc6-assembly5.cif.gz_E | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.9631 | 2 | 281 |
| 1vl0-assembly1.cif.gz_B | crystal structure of a dtdp-4-dehydrorhamnose reductase, rfbd ortholog (ca_c2315) from clostridium acetobutylicum atcc 824 at 2.05 a resolution | 0.9609 | 1 | 283 |
| 1kbz-assembly1.cif.gz_A | crystal structure of apo-dtdp-6-deoxy-l-lyxo-4-hexulose reductase (rmld) from salmonella enterica serovar typhimurium | 0.9501 | 1 | 285 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1vl0C02 | Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 | 0.9815 | 160 | 282 | 3.90.25.10 |
| 1vl0C02 | Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 | 0.9561 | 160 | 282 | 3.90.25.10 |
| 1kc0A00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.9431 | 1 | 285 | 3.40.50.720 |
| 3sc6D01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.9402 | 2 | 213 | 3.40.50.720 |
| 1kc0A00 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.9399 | 1 | 285 | 3.40.50.720 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5D0I356-F1-model_v4 | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.9904 | 64 | 282 |
GO:0008831
GO:0019305 |
| AF-A0A0M3CGC3-F1-model_v4 | deleted | 0.9897 | 152 | 279 |
|
| AF-A0A1M3GF14-F1-model_v4 | deleted | 0.9886 | 2 | 279 |
|
| AF-A0A7R8ZQM1-F1-model_v4 | Methionine adenosyltransferase 2 subunit beta (Methionine adenosyltransferase II beta) | 0.9843 | 27 | 283 |
GO:0005829
GO:0006556 GO:0006730 GO:0008830 GO:0008831 GO:0019305 GO:0045226 |
| AF-A0A3N2KJX7-F1-model_v4 | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.983 | 1 | 283 |
GO:0005829
GO:0008831 GO:0019305 GO:0045226 |