F301174
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 196 | 142 | 160 | 388 |
Family's Representative Sequence
| Representative Sequence | 3300005444|Ga0070694_100002459|Ga0070694_1000024592 |
| Length | 406 |
| Sequence | VDEGRHHVRAPAPLRPSASNSQKPRTRWSFNDPHVRALVYQAALIAAVAFVGWYFVSNTLRNLDERKIATGFAFLAREAGFEIGETSGFAYGAADTYLRALGIGLANTFRIAAVGVVLATIGLARLSRNWLIARLAAVYVEVMRNIPLLVQLFFWYTIISENLPGPKDALTPLPGLFLSNRGITFPVLHYDPAQWWLLAALLVGAVIAFLLVRWATRRQAATGEQFPAYSVGFGIMLGLPLLVLFAAGIPHEIHRPELSGFNFVGGAALTPEYAALLFGLVVYTAAFIAEIVRAGVLAVDRGQFEAAHALGLPRSRAMRLVVLPQALRVIVPPMTSQYLNLTKNSSLAVAIGYPDLVSIANTTLNQTGQAIEGIMIIMAVYLTISLSISAFMNWYNRRVALKGART |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2511231221 | Azospirillum lipoferum 4B | Isolate | Rhizosphere |
| 2 | 2524023250 | Niveispirillum irakense DSM 11586 | Isolate | Unclassified |
| 3 | 2599185292 | Achromobacter sp. NFACC18-2 | Isolate | Rhizoplane |
| 4 | 2643221569 | Achromobacter sp. Root565 | Isolate | Unclassified |
| 5 | 2643221594 | Achromobacter sp. Root170 | Isolate | Unclassified |
| 6 | 2643221621 | Achromobacter sp. Root83 | Isolate | Unclassified |
| 7 | 2739367655 | Pusillimonas sp. YR330 | Isolate | Unclassified |
| 8 | 2808606395 | Achromobacter sp. SLBN-14 | Isolate | Unclassified |
| 9 | 2842333319 | Skermanella aerolata SEMIA 4010 | Isolate | Nodule |
| 10 | 2855730933 | Achromobacter sp. HZ28 | Isolate | Nodule |
| 11 | 2855767633 | Achromobacter sp. HZ34 | Isolate | Nodule |
| 12 | 2857537821 | Achromobacter sp. R-71975 | Isolate | Unclassified |
| 13 | 2857542790 | Achromobacter sp. R-72367 | Isolate | Unclassified |
| 14 | 2858950400 | Achromobacter sp. K91 | Isolate | Unclassified |
| 15 | 2881412998 | Achromobacter aloeverae AVA-1 | Isolate | Unclassified |
| 16 | 2881927736 | Candidimonas sp. SYP-B2681 | Isolate | Rhizosphere |
| 17 | 2887375801 | Parapusillimonas sp. SGNA-6 | Isolate | Rhizosphere |
| 18 | 2897803580 | Azospirillum doebereinerae GSF71 | Isolate | Unclassified |
| 19 | 2909042592 | Labrys sp. LIt4 | Isolate | Nodule |
| 20 | 2941479691 | |||
| 21 | 3300003187 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB | Metagenome | Endosphere |
| 22 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 23 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 24 | 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Metagenome | Rhizosphere |
| 25 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 27 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 28 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 29 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 30 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 31 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 33 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 34 | 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Metagenome | Rhizosphere |
| 35 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 36 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 37 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 38 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 39 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 40 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 41 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 42 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 43 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 44 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 45 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 46 | 3300006186 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 | Metagenome | Endosphere |
| 47 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 48 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 49 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 50 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 51 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 56 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 57 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 58 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 59 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 60 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 61 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 62 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 63 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300027543 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300027682 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 82 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 83 | 3300031691 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA | Metagenome | Rhizosphere |
| 84 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 85 | 3300032133 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA | Metagenome | Rhizosphere |
| 86 | 3300035398 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 | Metagenome | Rhizosphere |
| 87 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 88 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 89 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 90 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 91 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 92 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 93 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 94 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 95 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 96 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 97 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 98 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 99 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 100 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 101 | 3300046491 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 103 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 104 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 105 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 106 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 107 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 108 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 109 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 110 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 111 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 112 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 113 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 114 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 116 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 117 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 118 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 119 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 120 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 121 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 122 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 123 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 124 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 125 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 126 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 127 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 128 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 129 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 130 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 131 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 132 | 3300050516 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation | Metagenome | Endosphere |
| 133 | 3300053079 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere | Metagenome | Endosphere |
| 134 | 3300053117 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere | Metagenome | Endosphere |
| 135 | 3300053130 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere | Metagenome | Endosphere |
| 136 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 137 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 138 | 3300053731 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere | Metagenome | Endosphere |
| 139 | 8002392321 | Alcaligenes faecalis Mc250 | Isolate | Rhizosphere |
| 140 | 8048746797 | Alcaligenes endophyticus DSM 100498 | Isolate | Unclassified |
| 141 | 8054002106 | Azospirillum lipoferum 59b | Isolate | Unclassified |
| 142 | 8055225921 | Achromobacter panacis KCTC 42751 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 81.63 |
| Metatranscriptomes | 0 |
| Isolates | 18.37 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 13.27 |
| Nodule | 3.06 |
| Rhizoplane | 1.53 |
| Rhizosphere | 56.12 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 26.02 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25151J46595_10000652 | 3300003187 | Bacteria | 29555 |
| 2 | JGI25151J46595_10004429 | 3300003187 | Bacteria | 7434 |
| 3 | Ga0070683_100051864 | 3300005329 | Bacteria | 3799 |
| 4 | Ga0070680_100000933 | 3300005336 | Bacteria | 20696 |
| 5 | Ga0070691_10002257 | 3300005341 | Bacteria | 8533 |
| 6 | Ga0070661_100010468 | 3300005344 | Bacteria | 6452 |
| 7 | Ga0070713_100035066 | 3300005436 | Bacteria | 4036 |
| 8 | Ga0070694_100002459 | 3300005444 | Bacteria | 10936 |
| 9 | Ga0070662_100180917 | 3300005457 | Bacteria | 1662 |
| 10 | Ga0070681_10005034 | 3300005458 | Bacteria | 12741 |
| 11 | Ga0070706_100019382 | 3300005467 | Bacteria | 6274 |
| 12 | Ga0070699_100018938 | 3300005518 | Bacteria | 5919 |
| 13 | Ga0070679_100029375 | 3300005530 | Bacteria | 5424 |
| 14 | Ga0070684_100050343 | 3300005535 | Bacteria | 3618 |
| 15 | Ga0070695_100002718 | 3300005545 | Bacteria | 10251 |
| 16 | Ga0070704_100017580 | 3300005549 | Bacteria | 4551 |
| 17 | Ga0068855_100046520 | 3300005563 | Bacteria | 5129 |
| 18 | Ga0070664_100004136 | 3300005564 | Bacteria | 11655 |
| 19 | Ga0068857_100199489 | 3300005577 | Bacteria | 1824 |
| 20 | Ga0068856_100041013 | 3300005614 | Bacteria | 4548 |
| 21 | Ga0068856_100074120 | 3300005614 | Bacteria | 3370 |
| 22 | Ga0068852_100007402 | 3300005616 | Bacteria | 8012 |
| 23 | Ga0081455_10001058 | 3300005937 | Bacteria | 34638 |
| 24 | Ga0081455_10011670 | 3300005937 | Bacteria | 8812 |
| 25 | Ga0081539_10005660 | 3300005985 | Bacteria | 12555 |
| 26 | Ga0070717_10089035 | 3300006028 | Bacteria | 2603 |
| 27 | Ga0075363_100113280 | 3300006048 | Bacteria | 1509 |
| 28 | Ga0075364_10001580 | 3300006051 | Bacteria | 12466 |
| 29 | Ga0075364_10020312 | 3300006051 | Bacteria | 4177 |
| 30 | Ga0075364_10052241 | 3300006051 | Bacteria | 2671 |
| 31 | Ga0075369_10006041 | 3300006186 | Bacteria | 4562 |
| 32 | Ga0075428_100497152 | 3300006844 | Bacteria | 1305 |
| 33 | Ga0075431_100195349 | 3300006847 | Bacteria | 2072 |
| 34 | Ga0075434_100144923 | 3300006871 | Bacteria | 2395 |
| 35 | Ga0105240_10004752 | 3300009093 | Bacteria | 20518 |
| 36 | Ga0157373_10029544 | 3300013100 | Bacteria | 3948 |
| 37 | Ga0157371_10043587 | 3300013102 | Bacteria | 3196 |
| 38 | Ga0157370_10063308 | 3300013104 | Bacteria | 3505 |
| 39 | Ga0157369_10284590 | 3300013105 | Bacteria | 1721 |
| 40 | Ga0157374_10065498 | 3300013296 | Bacteria | 3412 |
| 41 | Ga0157372_10479547 | 3300013307 | Bacteria | 1450 |
| 42 | Ga0182006_1033046 | 3300015261 | Bacteria | 2075 |
| 43 | Ga0213872_10074067 | 3300021361 | Bacteria | 1533 |
| 44 | Ga0209455_1000227 | 3300025272 | Bacteria | 75434 |
| 45 | Ga0209676_1000019 | 3300025292 | Bacteria | 620012 |
| 46 | Ga0209676_1008189 | 3300025292 | Bacteria | 4717 |
| 47 | Ga0209676_1009462 | 3300025292 | Bacteria | 4199 |
| 48 | Ga0209025_1000055 | 3300025294 | Bacteria | 316748 |
| 49 | Ga0209025_1000071 | 3300025294 | Bacteria | 287297 |
| 50 | Ga0207426_1021336 | 3300025302 | Bacteria | 2239 |
| 51 | Ga0207645_10068891 | 3300025907 | Bacteria | 2263 |
| 52 | Ga0207684_10074581 | 3300025910 | Bacteria | 2882 |
| 53 | Ga0207707_10006861 | 3300025912 | Bacteria | 9931 |
| 54 | Ga0207707_10022534 | 3300025912 | Bacteria | 5506 |
| 55 | Ga0207660_10012551 | 3300025917 | Bacteria | 5547 |
| 56 | Ga0207657_10114596 | 3300025919 | Bacteria | 2223 |
| 57 | Ga0207649_10035940 | 3300025920 | Bacteria | 2980 |
| 58 | Ga0207652_10017133 | 3300025921 | Bacteria | 5926 |
| 59 | Ga0207652_10101474 | 3300025921 | Bacteria | 2542 |
| 60 | Ga0207646_10048513 | 3300025922 | Bacteria | 3806 |
| 61 | Ga0207650_10261952 | 3300025925 | Bacteria | 1403 |
| 62 | Ga0207659_10076853 | 3300025926 | Bacteria | 2456 |
| 63 | Ga0207644_10112331 | 3300025931 | Bacteria | 2062 |
| 64 | Ga0207679_10163023 | 3300025945 | Bacteria | 1827 |
| 65 | Ga0207667_10013661 | 3300025949 | Bacteria | 9281 |
| 66 | Ga0207702_10098345 | 3300026078 | Bacteria | 2577 |
| 67 | Ga0207674_10077802 | 3300026116 | Bacteria | 3322 |
| 68 | Ga0207698_10154412 | 3300026142 | Bacteria | 1997 |
| 69 | Ga0209999_1000197 | 3300027543 | Bacteria | 8368 |
| 70 | Ga0209971_1008166 | 3300027682 | Bacteria | 2484 |
| 71 | Ga0265334_10010512 | 3300028573 | Bacteria | 3907 |
| 72 | Ga0265340_10034575 | 3300031247 | Bacteria | 2513 |
| 73 | Ga0316579_10007429 | 3300031691 | Bacteria | 4525 |
| 74 | Ga0307412_10012049 | 3300031911 | Bacteria | 5026 |
| 75 | Ga0316583_10013789 | 3300032133 | Bacteria | 2916 |
| 76 | Ga0316574_0017399 | 3300035398 | Bacteria | 4207 |
| 77 | Ga0316582_0016404 | 3300036647 | Bacteria | 4258 |
| 78 | Ga0373925_0057640 | 3300037068 | Bacteria | 2911 |
| 79 | Ga0395899_0018306 | 3300037312 | Bacteria | 5326 |
| 80 | Ga0395899_0040987 | 3300037312 | Bacteria | 3461 |
| 81 | Ga0395899_0076303 | 3300037312 | Bacteria | 2447 |
| 82 | Ga0395900_0003258 | 3300037418 | Bacteria | 17580 |
| 83 | Ga0395900_0222165 | 3300037418 | Bacteria | 1903 |
| 84 | Ga0395898_0010140 | 3300037466 | Bacteria | 9861 |
| 85 | Ga0395898_0041252 | 3300037466 | Bacteria | 4559 |
| 86 | Ga0395905_0181148 | 3300037471 | Bacteria | 1978 |
| 87 | Ga0395905_0251576 | 3300037471 | Bacteria | 1651 |
| 88 | Ga0395901_0019554 | 3300038443 | Bacteria | 6921 |
| 89 | Ga0395901_0071570 | 3300038443 | Bacteria | 3614 |
| 90 | Ga0395901_0177822 | 3300038443 | Bacteria | 2231 |
| 91 | Ga0436365_0346418 | 3300039437 | Bacteria | 10652 |
| 92 | Ga0436360_0027829 | 3300039438 | Bacteria | 2467 |
| 93 | Ga0436361_0922093 | 3300039447 | Bacteria | 2458 |
| 94 | Ga0436361_1139744 | 3300039447 | Bacteria | 4659 |
| 95 | Ga0466963_0004727 | 3300044694 | Bacteria | 7951 |
| 96 | Ga0466957_0039203 | 3300044842 | Bacteria | 2858 |
| 97 | Ga0466958_0076558 | 3300045836 | Bacteria | 2054 |
| 98 | Ga0466967_0075866 | 3300045976 | Bacteria | 3022 |
| 99 | Ga0495584_0001246 | 3300046491 | Bacteria | 15540 |
| 100 | Ga0496110_0167423 | 3300048913 | Bacteria | 1993 |
| 101 | Ga0496116_0006806 | 3300048919 | Bacteria | 10280 |
| 102 | Ga0496116_0020483 | 3300048919 | Bacteria | 5021 |
| 103 | Ga0496116_0026140 | 3300048919 | Bacteria | 4275 |
| 104 | Ga0496117_0008654 | 3300048920 | Bacteria | 9627 |
| 105 | Ga0496118_0013664 | 3300048921 | Bacteria | 7662 |
| 106 | Ga0496118_0026931 | 3300048921 | Bacteria | 4881 |
| 107 | Ga0496119_0046527 | 3300048922 | Bacteria | 2708 |
| 108 | Ga0496120_0005980 | 3300048923 | Bacteria | 9479 |
| 109 | Ga0496121_0000153 | 3300048924 | Bacteria | 150635 |
| 110 | Ga0496121_0000847 | 3300048924 | Bacteria | 55469 |
| 111 | Ga0496121_0025348 | 3300048924 | Bacteria | 5631 |
| 112 | Ga0496121_0037538 | 3300048924 | Bacteria | 4302 |
| 113 | Ga0496122_0000017 | 3300048925 | Bacteria | 439553 |
| 114 | Ga0496122_0004972 | 3300048925 | Bacteria | 16086 |
| 115 | Ga0496122_0058410 | 3300048925 | Bacteria | 2856 |
| 116 | Ga0496122_0102518 | 3300048925 | Bacteria | 1907 |
| 117 | Ga0496122_0152204 | 3300048925 | Bacteria | 1426 |
| 118 | Ga0496123_0000033 | 3300048926 | Bacteria | 274961 |
| 119 | Ga0496123_0003372 | 3300048926 | Bacteria | 18061 |
| 120 | Ga0496123_0011159 | 3300048926 | Bacteria | 7825 |
| 121 | Ga0496123_0038167 | 3300048926 | Bacteria | 3380 |
| 122 | Ga0496124_0000007 | 3300048927 | Bacteria | 883534 |
| 123 | Ga0496124_0117764 | 3300048927 | Bacteria | 2127 |
| 124 | Ga0496125_0002020 | 3300048928 | Bacteria | 27488 |
| 125 | Ga0496125_0003181 | 3300048928 | Bacteria | 20325 |
| 126 | Ga0496125_0005929 | 3300048928 | Bacteria | 13386 |
| 127 | Ga0496125_0028052 | 3300048928 | Bacteria | 5091 |
| 128 | Ga0496126_0033069 | 3300048929 | Bacteria | 4867 |
| 129 | Ga0501034_0004452 | 3300049571 | Bacteria | 15575 |
| 130 | Ga0501034_0059392 | 3300049571 | Bacteria | 3841 |
| 131 | Ga0501034_0265947 | 3300049571 | Bacteria | 1657 |
| 132 | Ga0501039_0019757 | 3300049575 | Bacteria | 5165 |
| 133 | Ga0501039_0048696 | 3300049575 | Bacteria | 3276 |
| 134 | Ga0501040_0114146 | 3300049576 | Bacteria | 1891 |
| 135 | Ga0501043_0057767 | 3300049579 | Bacteria | 3046 |
| 136 | Ga0501047_0068207 | 3300049581 | Bacteria | 3426 |
| 137 | Ga0501068_0131953 | 3300049584 | Bacteria | 1562 |
| 138 | Ga0501071_0001815 | 3300049587 | Bacteria | 12646 |
| 139 | Ga0501072_0096883 | 3300049588 | Bacteria | 2344 |
| 140 | Ga0501073_0102214 | 3300049589 | Bacteria | 1990 |
| 141 | Ga0501076_0055449 | 3300049592 | Bacteria | 3143 |
| 142 | Ga0501079_0054972 | 3300049741 | Bacteria | 3071 |
| 143 | Ga0501080_0010773 | 3300049742 | Bacteria | 8366 |
| 144 | Ga0501083_0141260 | 3300049744 | Bacteria | 1577 |
| 145 | Ga0501035_0012811 | 3300049822 | Bacteria | 7744 |
| 146 | Ga0501035_0085381 | 3300049822 | Bacteria | 2783 |
| 147 | Ga0501044_0000617 | 3300049823 | Bacteria | 42992 |
| 148 | Ga0501044_0005764 | 3300049823 | Bacteria | 13705 |
| 149 | nmdc:mga03683_60580_c1 | 3300050489 | Bacteria | 1599 |
| 150 | nmdc:mga00v17_44100_c1 | 3300050491 | Bacteria | 2688 |
| 151 | nmdc:mga00v17_50756_c1 | 3300050491 | Bacteria | 2522 |
| 152 | nmdc:mga07m45_74844_c1 | 3300050496 | Bacteria | 1929 |
| 153 | nmdc:mga0sz30_28374_c2 | 3300050516 | Bacteria | 1777 |
| 154 | nmdc:mga0sz30_9518_c1 | 3300050516 | Bacteria | 3700 |
| 155 | Ga0500610_0000384 | 3300053079 | Bacteria | 13394 |
| 156 | Ga0500593_000406 | 3300053117 | Bacteria | 17103 |
| 157 | Ga0500642_0000247 | 3300053130 | Bacteria | 20388 |
| 158 | Ga0500658_0020360 | 3300053134 | Bacteria | 2504 |
| 159 | Ga0500616_0001438 | 3300053153 | Bacteria | 22861 |
| 160 | Ga0500609_007653 | 3300053731 | Bacteria | 1459 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300048913 | Ga0496110_0167423 | Ga0496110_0167423_995_1978 | 326 |
| 2 | 3300006844 | Ga0075428_100497152 | Ga0075428_1004971522 | 333 |
| 3 | 3300006847 | Ga0075431_100195349 | Ga0075431_1001953492 | 333 |
| 4 | 3300049579 | Ga0501043_0057767 | Ga0501043_0057767_252_1439 | 356 |
| 5 | 3300037471 | Ga0395905_0181148 | Ga0395905_0181148_716_1840 | 358 |
| 6 | 3300036647 | Ga0316582_0016404 | Ga0316582_0016404_375_1529 | 359 |
| 7 | 3300006051 | Ga0075364_10052241 | Ga0075364_100522411 | 363 |
| 8 | 3300050491 | nmdc:mga00v17_44100_c1 | nmdc:mga00v17_44100_c1_1492_2613 | 363 |
| 9 | 3300048924 | Ga0496121_0025348 | Ga0496121_0025348_839_2029 | 364 |
| 10 | 3300049575 | Ga0501039_0048696 | Ga0501039_0048696_800_1939 | 364 |
| 11 | 3300049584 | Ga0501068_0131953 | Ga0501068_0131953_268_1407 | 364 |
| 12 | 3300049587 | Ga0501071_0001815 | Ga0501071_0001815_6001_7140 | 364 |
| 13 | 3300049588 | Ga0501072_0096883 | Ga0501072_0096883_299_1438 | 364 |
| 14 | 3300049589 | Ga0501073_0102214 | Ga0501073_0102214_427_1566 | 364 |
| 15 | 3300049592 | Ga0501076_0055449 | Ga0501076_0055449_1507_2646 | 364 |
| 16 | 3300049741 | Ga0501079_0054972 | Ga0501079_0054972_150_1289 | 364 |
| 17 | 3300049742 | Ga0501080_0010773 | Ga0501080_0010773_6012_7151 | 364 |
| 18 | 3300049744 | Ga0501083_0141260 | Ga0501083_0141260_302_1441 | 364 |
| 19 | iso_pu_bacteria | 2643221594 | 2643979178 | 366 |
| 20 | iso_pu_bacteria | 2808606395 | 2809036055 | 366 |
| 21 | 3300021361 | Ga0213872_10074067 | Ga0213872_100740672 | 368 |
| 22 | 3300031691 | Ga0316579_10007429 | Ga0316579_100074294 | 368 |
| 23 | 3300032133 | Ga0316583_10013789 | Ga0316583_100137891 | 368 |
| 24 | 3300039438 | Ga0436360_0027829 | Ga0436360_0027829_290_1405 | 368 |
| 25 | 3300039447 | Ga0436361_0922093 | Ga0436361_0922093_829_1944 | 368 |
| 26 | 3300050516 | nmdc:mga0sz30_28374_c2 | nmdc:mga0sz30_28374_c2_181_1338 | 371 |
| 27 | 3300049823 | Ga0501044_0000617 | Ga0501044_0000617_15813_16934 | 373 |
| 28 | 3300006048 | Ga0075363_100113280 | Ga0075363_1001132802 | 374 |
| 29 | 3300025292 | Ga0209676_1000019 | Ga0209676_1000019512 | 374 |
| 30 | 3300027543 | Ga0209999_1000197 | Ga0209999_10001974 | 377 |
| 31 | 3300027682 | Ga0209971_1008166 | Ga0209971_10081662 | 377 |
| 32 | 3300049575 | Ga0501039_0019757 | Ga0501039_0019757_2890_4080 | 377 |
| 33 | 3300049822 | Ga0501035_0012811 | Ga0501035_0012811_6063_7253 | 377 |
| 34 | 3300049823 | Ga0501044_0005764 | Ga0501044_0005764_3057_4247 | 377 |
| 35 | 3300049571 | Ga0501034_0265947 | Ga0501034_0265947_125_1315 | 380 |
| 36 | iso_pu_bacteria | 2511231221 | 2512037700 | 380 |
| 37 | iso_pu_bacteria | 2897803580 | 2897807407 | 380 |
| 38 | iso_pu_bacteria | 8054002106 | 8054006982 | 380 |
| 39 | 3300035398 | Ga0316574_0017399 | Ga0316574_0017399_1915_3069 | 382 |
| 40 | 3300005937 | Ga0081455_10011670 | Ga0081455_100116706 | 383 |
| 41 | 3300026116 | Ga0207674_10077802 | Ga0207674_100778022 | 383 |
| 42 | 3300050489 | nmdc:mga03683_60580_c1 | nmdc:mga03683_60580_c1_142_1332 | 383 |
| 43 | 3300050496 | nmdc:mga07m45_74844_c1 | nmdc:mga07m45_74844_c1_155_1312 | 383 |
| 44 | 3300053153 | Ga0500616_0001438 | Ga0500616_0001438_14603_15760 | 383 |
| 45 | 3300005436 | Ga0070713_100035066 | Ga0070713_1000350664 | 384 |
| 46 | 3300037068 | Ga0373925_0057640 | Ga0373925_0057640_469_1656 | 384 |
| 47 | 3300048925 | Ga0496122_0058410 | Ga0496122_0058410_1688_2845 | 384 |
| 48 | 3300005937 | Ga0081455_10001058 | Ga0081455_100010589 | 385 |
| 49 | 3300006051 | Ga0075364_10001580 | Ga0075364_100015809 | 385 |
| 50 | 3300025292 | Ga0209676_1008189 | Ga0209676_10081895 | 385 |
| 51 | 3300050491 | nmdc:mga00v17_50756_c1 | nmdc:mga00v17_50756_c1_396_1586 | 385 |
| 52 | 3300005457 | Ga0070662_100180917 | Ga0070662_1001809171 | 386 |
| 53 | 3300015261 | Ga0182006_1033046 | Ga0182006_10330462 | 386 |
| 54 | 3300048920 | Ga0496117_0008654 | Ga0496117_0008654_5780_6967 | 386 |
| 55 | 3300048921 | Ga0496118_0013664 | Ga0496118_0013664_133_1320 | 386 |
| 56 | 3300048926 | Ga0496123_0011159 | Ga0496123_0011159_3896_5056 | 386 |
| 57 | 3300049576 | Ga0501040_0114146 | Ga0501040_0114146_350_1543 | 386 |
| 58 | 3300005329 | Ga0070683_100051864 | Ga0070683_1000518643 | 387 |
| 59 | 3300005344 | Ga0070661_100010468 | Ga0070661_1000104682 | 387 |
| 60 | 3300005535 | Ga0070684_100050343 | Ga0070684_1000503433 | 387 |
| 61 | 3300005564 | Ga0070664_100004136 | Ga0070664_1000041362 | 387 |
| 62 | 3300005577 | Ga0068857_100199489 | Ga0068857_1001994892 | 387 |
| 63 | 3300005614 | Ga0068856_100041013 | Ga0068856_1000410132 | 387 |
| 64 | 3300005616 | Ga0068852_100007402 | Ga0068852_1000074022 | 387 |
| 65 | 3300013100 | Ga0157373_10029544 | Ga0157373_100295443 | 387 |
| 66 | 3300013102 | Ga0157371_10043587 | Ga0157371_100435872 | 387 |
| 67 | 3300013105 | Ga0157369_10284590 | Ga0157369_102845901 | 387 |
| 68 | 3300013307 | Ga0157372_10479547 | Ga0157372_104795471 | 387 |
| 69 | 3300025292 | Ga0209676_1009462 | Ga0209676_10094622 | 387 |
| 70 | 3300025919 | Ga0207657_10114596 | Ga0207657_101145962 | 387 |
| 71 | 3300025920 | Ga0207649_10035940 | Ga0207649_100359402 | 387 |
| 72 | 3300025922 | Ga0207646_10048513 | Ga0207646_100485132 | 387 |
| 73 | 3300025945 | Ga0207679_10163023 | Ga0207679_101630232 | 387 |
| 74 | 3300026078 | Ga0207702_10098345 | Ga0207702_100983452 | 387 |
| 75 | 3300026142 | Ga0207698_10154412 | Ga0207698_101544122 | 387 |
| 76 | 3300037312 | Ga0395899_0040987 | Ga0395899_0040987_784_1974 | 387 |
| 77 | 3300037466 | Ga0395898_0041252 | Ga0395898_0041252_2964_4154 | 387 |
| 78 | 3300038443 | Ga0395901_0177822 | Ga0395901_0177822_724_1914 | 387 |
| 79 | 3300039437 | Ga0436365_0346418 | Ga0436365_0346418_2634_3827 | 387 |
| 80 | 3300044694 | Ga0466963_0004727 | Ga0466963_0004727_6101_7291 | 387 |
| 81 | 3300044842 | Ga0466957_0039203 | Ga0466957_0039203_866_2056 | 387 |
| 82 | 3300045836 | Ga0466958_0076558 | Ga0466958_0076558_431_1621 | 387 |
| 83 | 3300045976 | Ga0466967_0075866 | Ga0466967_0075866_1176_2366 | 387 |
| 84 | 3300048923 | Ga0496120_0005980 | Ga0496120_0005980_5311_6474 | 387 |
| 85 | 3300048924 | Ga0496121_0000847 | Ga0496121_0000847_37057_38220 | 387 |
| 86 | 3300048928 | Ga0496125_0003181 | Ga0496125_0003181_15237_16400 | 387 |
| 87 | 3300053079 | Ga0500610_0000384 | Ga0500610_0000384_8472_9635 | 387 |
| 88 | 3300053117 | Ga0500593_000406 | Ga0500593_000406_8542_9705 | 387 |
| 89 | 3300006186 | Ga0075369_10006041 | Ga0075369_100060412 | 389 |
| 90 | 3300050516 | nmdc:mga0sz30_9518_c1 | nmdc:mga0sz30_9518_c1_454_1644 | 389 |
| 91 | iso_pu_bacteria | 2739367655 | 2739610516 | 390 |
| 92 | iso_pu_bacteria | 2881927736 | 2881929235 | 390 |
| 93 | iso_pu_bacteria | 2887375801 | 2887375874 | 390 |
| 94 | iso_pu_bacteria | 2909042592 | 2909047979 | 390 |
| 95 | iso_pu_bacteria | 8048746797 | 8048748707 | 390 |
| 96 | 3300005444 | Ga0070694_100002459 | Ga0070694_1000024592 | 391 |
| 97 | 3300005545 | Ga0070695_100002718 | Ga0070695_1000027183 | 391 |
| 98 | 3300005549 | Ga0070704_100017580 | Ga0070704_1000175803 | 391 |
| 99 | iso_pu_bacteria | 8002392321 | 8002395604 | 391 |
| 100 | 3300005458 | Ga0070681_10005034 | Ga0070681_1000503411 | 392 |
| 101 | 3300025912 | Ga0207707_10006861 | Ga0207707_100068614 | 392 |
| 102 | 3300025921 | Ga0207652_10101474 | Ga0207652_101014742 | 392 |
| 103 | iso_pu_bacteria | 2599185292 | 2599905927 | 392 |
| 104 | iso_pu_bacteria | 2599185292 | 2599907822 | 392 |
| 105 | iso_pu_bacteria | 2643221569 | 2643859085 | 392 |
| 106 | iso_pu_bacteria | 2643221569 | 2643859888 | 392 |
| 107 | iso_pu_bacteria | 2643221594 | 2643980085 | 392 |
| 108 | iso_pu_bacteria | 2643221621 | 2644121222 | 392 |
| 109 | iso_pu_bacteria | 2643221621 | 2644122952 | 392 |
| 110 | iso_pu_bacteria | 2808606395 | 2809033809 | 392 |
| 111 | iso_pu_bacteria | 2842333319 | 2842334792 | 392 |
| 112 | iso_pu_bacteria | 2855730933 | 2855735139 | 392 |
| 113 | iso_pu_bacteria | 2855730933 | 2855736716 | 392 |
| 114 | iso_pu_bacteria | 2855767633 | 2855770923 | 392 |
| 115 | iso_pu_bacteria | 2855767633 | 2855773653 | 392 |
| 116 | iso_pu_bacteria | 2857537821 | 2857539717 | 392 |
| 117 | iso_pu_bacteria | 2857542790 | 2857544492 | 392 |
| 118 | iso_pu_bacteria | 2858950400 | 2858954572 | 392 |
| 119 | iso_pu_bacteria | 2881412998 | 2881417500 | 392 |
| 120 | iso_pu_bacteria | 2881412998 | 2881418311 | 392 |
| 121 | iso_pu_bacteria | 2941479691 | 2941481436 | 392 |
| 122 | iso_pu_bacteria | 2941479691 | 2941484924 | 392 |
| 123 | iso_pu_bacteria | 8055225921 | 8055227561 | 392 |
| 124 | 3300005985 | Ga0081539_10005660 | Ga0081539_1000566010 | 393 |
| 125 | 3300025272 | Ga0209455_1000227 | Ga0209455_100022760 | 393 |
| 126 | 3300049822 | Ga0501035_0085381 | Ga0501035_0085381_24_1205 | 393 |
| 127 | 3300005336 | Ga0070680_100000933 | Ga0070680_10000093318 | 394 |
| 128 | 3300005341 | Ga0070691_10002257 | Ga0070691_100022574 | 394 |
| 129 | 3300005467 | Ga0070706_100019382 | Ga0070706_1000193826 | 394 |
| 130 | 3300005518 | Ga0070699_100018938 | Ga0070699_1000189385 | 394 |
| 131 | 3300005530 | Ga0070679_100029375 | Ga0070679_1000293753 | 394 |
| 132 | 3300005563 | Ga0068855_100046520 | Ga0068855_1000465205 | 394 |
| 133 | 3300005614 | Ga0068856_100074120 | Ga0068856_1000741202 | 394 |
| 134 | 3300006028 | Ga0070717_10089035 | Ga0070717_100890352 | 394 |
| 135 | 3300006871 | Ga0075434_100144923 | Ga0075434_1001449232 | 394 |
| 136 | 3300009093 | Ga0105240_10004752 | Ga0105240_100047522 | 394 |
| 137 | 3300013104 | Ga0157370_10063308 | Ga0157370_100633083 | 394 |
| 138 | 3300013296 | Ga0157374_10065498 | Ga0157374_100654982 | 394 |
| 139 | 3300025302 | Ga0207426_1021336 | Ga0207426_10213362 | 394 |
| 140 | 3300025907 | Ga0207645_10068891 | Ga0207645_100688912 | 394 |
| 141 | 3300025910 | Ga0207684_10074581 | Ga0207684_100745812 | 394 |
| 142 | 3300025912 | Ga0207707_10022534 | Ga0207707_100225341 | 394 |
| 143 | 3300025917 | Ga0207660_10012551 | Ga0207660_100125514 | 394 |
| 144 | 3300025921 | Ga0207652_10017133 | Ga0207652_100171333 | 394 |
| 145 | 3300025925 | Ga0207650_10261952 | Ga0207650_102619522 | 394 |
| 146 | 3300025926 | Ga0207659_10076853 | Ga0207659_100768532 | 394 |
| 147 | 3300025931 | Ga0207644_10112331 | Ga0207644_101123312 | 394 |
| 148 | 3300025949 | Ga0207667_10013661 | Ga0207667_100136612 | 394 |
| 149 | 3300028573 | Ga0265334_10010512 | Ga0265334_100105123 | 394 |
| 150 | 3300031247 | Ga0265340_10034575 | Ga0265340_100345752 | 394 |
| 151 | 3300037312 | Ga0395899_0018306 | Ga0395899_0018306_3376_4563 | 394 |
| 152 | 3300037312 | Ga0395899_0076303 | Ga0395899_0076303_275_1462 | 394 |
| 153 | 3300037418 | Ga0395900_0222165 | Ga0395900_0222165_446_1633 | 394 |
| 154 | 3300037466 | Ga0395898_0010140 | Ga0395898_0010140_2840_4027 | 394 |
| 155 | 3300038443 | Ga0395901_0019554 | Ga0395901_0019554_5144_6331 | 394 |
| 156 | 3300038443 | Ga0395901_0071570 | Ga0395901_0071570_405_1592 | 394 |
| 157 | 3300039447 | Ga0436361_1139744 | Ga0436361_1139744_2875_4119 | 394 |
| 158 | 3300046491 | Ga0495584_0001246 | Ga0495584_0001246_10393_11622 | 394 |
| 159 | 3300049571 | Ga0501034_0004452 | Ga0501034_0004452_12360_13547 | 394 |
| 160 | 3300049571 | Ga0501034_0059392 | Ga0501034_0059392_1793_2980 | 394 |
| 161 | 3300049581 | Ga0501047_0068207 | Ga0501047_0068207_353_1540 | 394 |
| 162 | 3300053731 | Ga0500609_007653 | Ga0500609_007653_74_1261 | 394 |
| 163 | iso_pu_bacteria | 2511231221 | 2512033428 | 394 |
| 164 | iso_pu_bacteria | 2897803580 | 2897805914 | 394 |
| 165 | iso_pu_bacteria | 8054002106 | 8054002498 | 394 |
| 166 | 3300037418 | Ga0395900_0003258 | Ga0395900_0003258_1347_2534 | 395 |
| 167 | 3300037471 | Ga0395905_0251576 | Ga0395905_0251576_230_1417 | 395 |
| 168 | iso_pu_bacteria | 2524023250 | 2524611893 | 395 |
| 169 | 3300003187 | JGI25151J46595_10000652 | JGI25151J46595_100006524 | 396 |
| 170 | 3300003187 | JGI25151J46595_10004429 | JGI25151J46595_100044292 | 396 |
| 171 | 3300006051 | Ga0075364_10020312 | Ga0075364_100203121 | 396 |
| 172 | 3300025294 | Ga0209025_1000055 | Ga0209025_100005548 | 396 |
| 173 | 3300025294 | Ga0209025_1000071 | Ga0209025_1000071101 | 396 |
| 174 | 3300031911 | Ga0307412_10012049 | Ga0307412_100120495 | 396 |
| 175 | 3300048919 | Ga0496116_0006806 | Ga0496116_0006806_4625_5815 | 396 |
| 176 | 3300048919 | Ga0496116_0020483 | Ga0496116_0020483_3200_4390 | 396 |
| 177 | 3300048919 | Ga0496116_0026140 | Ga0496116_0026140_182_1372 | 396 |
| 178 | 3300048921 | Ga0496118_0026931 | Ga0496118_0026931_405_1595 | 396 |
| 179 | 3300048922 | Ga0496119_0046527 | Ga0496119_0046527_1035_2225 | 396 |
| 180 | 3300048924 | Ga0496121_0000153 | Ga0496121_0000153_21295_22485 | 396 |
| 181 | 3300048924 | Ga0496121_0037538 | Ga0496121_0037538_2023_3213 | 396 |
| 182 | 3300048925 | Ga0496122_0000017 | Ga0496122_0000017_347246_348436 | 396 |
| 183 | 3300048925 | Ga0496122_0004972 | Ga0496122_0004972_14217_15407 | 396 |
| 184 | 3300048925 | Ga0496122_0102518 | Ga0496122_0102518_197_1387 | 396 |
| 185 | 3300048925 | Ga0496122_0152204 | Ga0496122_0152204_189_1379 | 396 |
| 186 | 3300048926 | Ga0496123_0000033 | Ga0496123_0000033_89997_91187 | 396 |
| 187 | 3300048926 | Ga0496123_0003372 | Ga0496123_0003372_14273_15463 | 396 |
| 188 | 3300048926 | Ga0496123_0038167 | Ga0496123_0038167_425_1615 | 396 |
| 189 | 3300048927 | Ga0496124_0000007 | Ga0496124_0000007_805964_807154 | 396 |
| 190 | 3300048927 | Ga0496124_0117764 | Ga0496124_0117764_300_1490 | 396 |
| 191 | 3300048928 | Ga0496125_0002020 | Ga0496125_0002020_2595_3785 | 396 |
| 192 | 3300048928 | Ga0496125_0005929 | Ga0496125_0005929_4055_5245 | 396 |
| 193 | 3300048928 | Ga0496125_0028052 | Ga0496125_0028052_707_1897 | 396 |
| 194 | 3300048929 | Ga0496126_0033069 | Ga0496126_0033069_553_1743 | 396 |
| 195 | 3300053130 | Ga0500642_0000247 | Ga0500642_0000247_11931_13130 | 396 |
| 196 | 3300053134 | Ga0500658_0020360 | Ga0500658_0020360_522_1715 | 396 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
PF00528
BPD_transp_1
Binding-protein-dependent transport system inner membrane component
226
401
0.76
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4ymu-assembly1.cif.gz_C | crystal structure of an amino acid abc transporter complex with arginines and atps | 0.749 | 85 | 391 |
| 4ymu-assembly1.cif.gz_C | crystal structure of an amino acid abc transporter complex with arginines and atps | 0.7155 | 85 | 391 |
| 7ahd-assembly1.cif.gz_B | opua (e190q) occluded | 0.6267 | 86 | 394 |
| 7ahc-assembly1.cif.gz_B | opua apo inward-facing | 0.6162 | 42 | 381 |
| 7mc0-assembly1.cif.gz_B | inward facing conformation of the metni methionine abc transporter | 0.6091 | 86 | 391 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P0AER5_2_224_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.7529 | 87 | 390 | 1.10.3720.10 |
| 4ymsD00 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.7501 | 85 | 391 | 1.10.3720.10 |
| af_P0AEQ6_1_218_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.737 | 85 | 390 | 1.10.3720.10 |
| af_Q2G225_74_270_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.7284 | 89 | 391 | 1.10.3720.10 |
| af_P52094_1_222_1.10.3720.10 | Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like | 0.7281 | 85 | 390 | 1.10.3720.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3N5UCA2-F1-model_v4 | Amino acid ABC transporter permease | 0.8702 | 50 | 301 |
GO:0006865
GO:0022857 GO:0043190 |
| AF-A0A3N5UCA2-F1-model_v4 | Amino acid ABC transporter permease | 0.8576 | 50 | 301 |
GO:0006865
GO:0022857 GO:0043190 |
| AF-A0A7V2SK51-F1-model_v4 | Amino acid ABC transporter permease | 0.8116 | 33 | 283 |
GO:0006865
GO:0022857 GO:0043190 |
| AF-A0A6A7M2E2-F1-model_v4 | ABC transporter permease subunit | 0.7914 | 87 | 359 |
GO:0006865
GO:0022857 GO:0043190 |
| AF-A0A537DYM6-F1-model_v4 | ABC transporter permease subunit | 0.7854 | 88 | 391 |
GO:0006865
GO:0022857 GO:0043190 |
Predicted Structure (AlphaFold2)
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