F301730

General Info

Members Datasets Scaffolds Average Seq Length
196 117 392 638

Family's Representative Sequence

Representative Sequence 3300028573|Ga0265334_10012211|Ga0265334_100122112
Length 700
Sequence MIPKETVDRIFDTARIDEVVGEFVSLKKRGSNMIGLCPFHNEKTPSFNVSPARGIYKCFGCGKGGNSVNFVMEHEHITYPEALKWLAKKYNIEIEEEEQSTEQQARDNERESLFLVSAFAQKHYTKNLHETEEGKAIGLSYFKERGFRADIIEKFQLGYSPDTWRDLTDAAIAAGYKLEYLVKAGLTIQNEEDKEKYFDRFKGRIIFPVHNPSGRVIAFGGRTLKTDKKIAKYINSPETEIYHKSNVLYGLYFAKKQIIAEDVCYLVEGYTDVTSMHQAGIENVVASSGTSLTVEQIRLIRRYTNNITILYDGDPAGIKASFRGIDLILEEGMNVRVLLFPDNDDPDSYSKKVSSEALKEFIRENTFKTELLSIEVGNDPIKKAGLIRDIVESIAKIPDAITRSVYVKECSRILDIDEQTLLNELNKHRRQKSESKKKSEPSENITIKKPENELFEDKNREIQFLYYEPAFKRGIPQEREIIRLLLMYGNEEVLMEGHDEDGKSTEIMTRVSDIILQELDVDNIHFNHIVYERFLQTYRDKYNVGKVPTADFFIRSEDADISMIATDIIFSPFTVHSWEKEFFLSLSKEFPLQSGIYVQEENKSLKRACQDAVYLLKLRKVEFMLRDLLNSIKNWEQEKQKLLQEGSIEDAKIRQEITRKNITQENKQTQIIEYLERLLQEMVSLDKARVTYAGLLKLAL

Samples

Sample ID Description Type Environment
1 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
27 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
31 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
32 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
33 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
36 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
45 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
46 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
47 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
67 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
71 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
72 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
73 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
74 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
75 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
76 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
77 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
78 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
79 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
80 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
81 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
82 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
83 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
87 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
90 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
91 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
94 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
95 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
96 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
97 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
100 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
101 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
102 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
103 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
104 3300049677 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control Metagenome Rhizosphere
105 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
110 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
111 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
112 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
113 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
114 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
115 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
116 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
117 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.41
Metatranscriptomes 0
Isolates 4.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.61
Nodule 0
Rhizoplane 0.51
Rhizosphere 85.71
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265334_10012211 3300028573 Bacteria 3610
2 JGI24737J22298_10001733 3300001990 Bacteria 7785
3 JGI24735J21928_10000003 3300002067 Bacteria 385983
4 JGI25162J39368_1000630 3300002737 Bacteria 25078
5 rootH1_10066348 3300003316 Bacteria 6323
6 rootH2_10012367 3300003320 Bacteria 23503
7 rootH2_10089855 3300003320 Bacteria 6277
8 rootH1_10001716 3300003323 Bacteria 29715
9 rootH1_10215817 3300003323 Bacteria 2185
10 Ga0065715_10003237 3300005293 Bacteria 5578
11 Ga0070658_10000060 3300005327 Bacteria 112561
12 Ga0070676_10002397 3300005328 Bacteria 9600
13 Ga0070683_100083939 3300005329 Bacteria 2984
14 Ga0070671_100019555 3300005355 Bacteria 5514
15 Ga0070659_100087600 3300005366 Bacteria 2493
16 Ga0070663_100008437 3300005455 Bacteria 6340
17 Ga0070678_100003834 3300005456 Bacteria 8435
18 Ga0070662_100000436 3300005457 Bacteria 24652
19 Ga0068867_100006341 3300005459 Bacteria 8364
20 Ga0068853_100111718 3300005539 Bacteria 2428
21 Ga0070672_100028921 3300005543 Bacteria 4150
22 Ga0070665_100000061 3300005548 Bacteria 222138
23 Ga0068855_100000109 3300005563 Bacteria 102724
24 Ga0068855_100003872 3300005563 Bacteria 18288
25 Ga0068856_100000021 3300005614 Bacteria 145017
26 Ga0068852_100000452 3300005616 Bacteria 27132
27 Ga0075366_10000116 3300006195 Bacteria 32774
28 Ga0075366_10016578 3300006195 Bacteria 4238
29 Ga0097621_100009160 3300006237 Bacteria 7177
30 Ga0068871_100000817 3300006358 Bacteria 20842
31 Ga0068865_100000853 3300006881 Bacteria 17265
32 Ga0105240_10000277 3300009093 Bacteria 101646
33 Ga0105240_10016240 3300009093 Bacteria 10089
34 Ga0105240_10047696 3300009093 Bacteria 5419
35 Ga0111539_10010530 3300009094 Bacteria 11642
36 Ga0105241_10018605 3300009174 Bacteria 5112
37 Ga0105241_10031504 3300009174 Bacteria 3971
38 Ga0105241_10125829 3300009174 Bacteria 2069
39 Ga0105242_10010662 3300009176 Bacteria 7054
40 Ga0105237_10000109 3300009545 Bacteria 115699
41 Ga0105237_10000620 3300009545 Bacteria 49579
42 Ga0105237_10004714 3300009545 Bacteria 15692
43 Ga0105237_10015276 3300009545 Bacteria 7997
44 Ga0105237_10026764 3300009545 Bacteria 5895
45 Ga0105237_10117371 3300009545 Bacteria 2655
46 Ga0105237_10180472 3300009545 Bacteria 2111
47 Ga0105238_10024398 3300009551 Bacteria 6164
48 Ga0105238_10074995 3300009551 Bacteria 3375
49 Ga0105239_10000045 3300010375 Bacteria 186314
50 Ga0105239_10000930 3300010375 Bacteria 41477
51 Ga0105239_10007302 3300010375 Bacteria 12688
52 Ga0105239_10026539 3300010375 Bacteria 6374
53 Ga0157373_10000063 3300013100 Bacteria 95201
54 Ga0157373_10031995 3300013100 Bacteria 3788
55 Ga0157371_10000342 3300013102 Bacteria 59948
56 Ga0157371_10002242 3300013102 Bacteria 18669
57 Ga0157371_10025640 3300013102 Bacteria 4294
58 Ga0157371_10050705 3300013102 Bacteria 2950
59 Ga0157369_10006608 3300013105 Bacteria 13415
60 Ga0157374_10000450 3300013296 Bacteria 37390
61 Ga0157374_10011229 3300013296 Bacteria 7747
62 Ga0157378_10012015 3300013297 Bacteria 7580
63 Ga0157378_10077484 3300013297 Bacteria 2997
64 Ga0163162_10000087 3300013306 Bacteria 85680
65 Ga0163162_10002294 3300013306 Bacteria 17960
66 Ga0163162_10019707 3300013306 Bacteria 6622
67 Ga0157372_10002216 3300013307 Bacteria 21112
68 Ga0157372_10002856 3300013307 Bacteria 18668
69 Ga0157372_10009188 3300013307 Bacteria 10508
70 Ga0157372_10010169 3300013307 Bacteria 9990
71 Ga0157372_10028573 3300013307 Bacteria 6087
72 Ga0157372_10079348 3300013307 Bacteria 3712
73 Ga0157372_10150599 3300013307 Bacteria 2685
74 Ga0157375_10037152 3300013308 Bacteria 4664
75 Ga0157380_10013511 3300014326 Bacteria 5956
76 Ga0213872_10031538 3300021361 Bacteria 2429
77 Ga0209026_1000309 3300025250 Bacteria 53002
78 Ga0209026_1000965 3300025250 Bacteria 14338
79 Ga0209233_1005622 3300025261 Bacteria 4145
80 Ga0209233_1006776 3300025261 Bacteria 3666
81 Ga0207647_10000079 3300025904 Bacteria 72325
82 Ga0207647_10000434 3300025904 Bacteria 34281
83 Ga0207645_10014515 3300025907 Bacteria 5270
84 Ga0207705_10000233 3300025909 Bacteria 55125
85 Ga0207654_10006423 3300025911 Bacteria 5918
86 Ga0207695_10000375 3300025913 Bacteria 101654
87 Ga0207695_10003303 3300025913 Bacteria 22890
88 Ga0207695_10061674 3300025913 Bacteria 3875
89 Ga0207671_10000899 3300025914 Bacteria 37624
90 Ga0207671_10001386 3300025914 Bacteria 28196
91 Ga0207671_10002828 3300025914 Bacteria 18049
92 Ga0207671_10005128 3300025914 Bacteria 12204
93 Ga0207671_10010368 3300025914 Bacteria 7696
94 Ga0207671_10012066 3300025914 Bacteria 6981
95 Ga0207671_10070081 3300025914 Bacteria 2613
96 Ga0207671_10114490 3300025914 Bacteria 2055
97 Ga0207657_10050419 3300025919 Bacteria 3623
98 Ga0207706_10000013 3300025933 Bacteria 188236
99 Ga0207704_10000576 3300025938 Bacteria 16329
100 Ga0207661_10044250 3300025944 Bacteria 3518
101 Ga0207667_10000154 3300025949 Bacteria 102734
102 Ga0207667_10016527 3300025949 Bacteria 8335
103 Ga0207667_10019032 3300025949 Bacteria 7675
104 Ga0207651_10015697 3300025960 Bacteria 4411
105 Ga0207639_10049338 3300026041 Bacteria 3192
106 Ga0207639_10072263 3300026041 Bacteria 2701
107 Ga0207678_10019653 3300026067 Bacteria 5940
108 Ga0207702_10004769 3300026078 Bacteria 11953
109 Ga0207648_10010804 3300026089 Bacteria 8626
110 Ga0207683_10003693 3300026121 Bacteria 13299
111 Ga0207698_10009425 3300026142 Bacteria 6226
112 Ga0207698_10058779 3300026142 Bacteria 2982
113 Ga0268266_10000053 3300028379 Bacteria 295181
114 Ga0265323_10000060 3300028653 Bacteria 60364
115 Ga0307517_10000207 3300028786 Bacteria 99774
116 Ga0307515_10000316 3300028794 Bacteria 119243
117 Ga0307515_10000782 3300028794 Bacteria 73268
118 Ga0265338_10042515 3300028800 Bacteria 4231
119 Ga0265327_10002705 3300031251 Bacteria 18187
120 Ga0265327_10003956 3300031251 Bacteria 13544
121 Ga0265316_10003275 3300031344 Bacteria 16434
122 Ga0307509_10100467 3300031507 Bacteria 2930
123 Ga0307408_100000514 3300031548 Bacteria 33392
124 Ga0316579_10018377 3300031691 Bacteria 3077
125 Ga0316577_10040025 3300031733 Bacteria 2622
126 Ga0307411_10010573 3300032005 Bacteria 4929
127 Ga0307507_10000099 3300033179 Bacteria 139532
128 Ga0307510_10005352 3300033180 Bacteria 15280
129 Ga0316574_0039371 3300035398 Bacteria 2906
130 Ga0316584_0004229 3300036712 Bacteria 9481
131 Ga0316584_0027770 3300036712 Bacteria 4167
132 Ga0395899_0000025 3300037312 Bacteria 350927
133 Ga0395899_0000027 3300037312 Bacteria 337387
134 Ga0395899_0000325 3300037312 Bacteria 60438
135 Ga0395899_0004831 3300037312 Bacteria 10492
136 Ga0395900_0002481 3300037418 Bacteria 20276
137 Ga0395900_0019456 3300037418 Bacteria 6922
138 Ga0395900_0025386 3300037418 Bacteria 6067
139 Ga0395898_0008739 3300037466 Bacteria 10684
140 Ga0395905_0000295 3300037471 Bacteria 73253
141 Ga0395905_0000729 3300037471 Bacteria 43376
142 Ga0395905_0031565 3300037471 Bacteria 4987
143 Ga0395905_0078433 3300037471 Bacteria 3095
144 Ga0395901_0002249 3300038443 Bacteria 19697
145 Ga0395901_0009475 3300038443 Bacteria 9881
146 Ga0436361_0950676 3300039447 Bacteria 6758
147 Ga0451577_0001069 3300042876 Bacteria 39336
148 Ga0451577_0063450 3300042876 Bacteria 3295
149 Ga0453684_0003203 3300044712 Bacteria 37513
150 Ga0453684_0004939 3300044712 Bacteria 27188
151 Ga0453684_0010962 3300044712 Bacteria 15323
152 Ga0453684_0022008 3300044712 Bacteria 9484
153 Ga0451576_0000002 3300045051 Bacteria 1670975
154 Ga0495650_0000107 3300046471 Bacteria 200864
155 Ga0495585_0000170 3300046492 Bacteria 70224
156 Ga0495606_0004389 3300046507 Bacteria 14135
157 Ga0495606_0007689 3300046507 Bacteria 9557
158 Ga0495616_0002915 3300046513 Bacteria 11153
159 Ga0495616_0003081 3300046513 Bacteria 10796
160 Ga0495648_0037379 3300046524 Bacteria 3120
161 Ga0495609_0004736 3300046538 Bacteria 7357
162 Ga0495633_0000593 3300046558 Bacteria 35033
163 Ga0495633_0011757 3300046558 Bacteria 4698
164 Ga0495668_0000086 3300046616 Bacteria 151960
165 Ga0495625_0000021 3300046660 Bacteria 282133
166 Ga0495625_0000344 3300046660 Bacteria 71298
167 Ga0495625_0001450 3300046660 Bacteria 28784
168 Ga0495625_0015218 3300046660 Bacteria 6103
169 Ga0495625_0015348 3300046660 Bacteria 6070
170 Ga0495625_0018424 3300046660 Bacteria 5452
171 Ga0495625_0043094 3300046660 Bacteria 3275
172 Ga0495649_0000009 3300046694 Bacteria 451725
173 Ga0495683_0021993 3300047323 Bacteria 3282
174 Ga0495687_001026 3300047443 Bacteria 27810
175 Ga0495687_008945 3300047443 Bacteria 5664
176 Ga0495687_023862 3300047443 Bacteria 2917
177 Ga0495686_0000107 3300047472 Bacteria 174386
178 Ga0495686_0001367 3300047472 Bacteria 27209
179 Ga0495678_008622 3300049459 Bacteria 5127
180 Ga0501247_002724 3300049677 Bacteria 1853
181 Ga0501241_000260 3300049758 Bacteria 11730
182 nmdc:mga0k408_10497_c1 3300050493 Bacteria 5010
183 nmdc:mga0k408_3647_c1 3300050493 Bacteria 2097
184 Ga0500618_000016 3300053125 Bacteria 164049
185 Ga0500622_0000066 3300053156 Bacteria 124842
186 Ga0500622_0000175 3300053156 Bacteria 69363
187 Ga0500622_0000179 3300053156 Bacteria 68943
188 2599479694 2599185184 Bacteria 6430550
189 2852625586 2852623160 Bacteria 4376875
190 2884934586 2884933994 Bacteria 4535041
191 2890807110 2890804823 Bacteria 3717572
192 2919440256 2919437846 Bacteria 6199444
193 2928083751 2928078545 Bacteria 6534839
194 2928152192 2928147474 Bacteria 6512076
195 2932084752 2932082852 Bacteria 6563563
196 2977235612 2977232053 Bacteria 5485925
197 Ga0265334_10012211
198 JGI24737J22298_10001733
199 JGI24735J21928_10000003
200 JGI25162J39368_1000630
201 rootH1_10066348
202 rootH2_10012367
203 rootH2_10089855
204 rootH1_10001716
205 rootH1_10215817
206 Ga0065715_10003237
207 Ga0070658_10000060
208 Ga0070676_10002397
209 Ga0070683_100083939
210 Ga0070671_100019555
211 Ga0070659_100087600
212 Ga0070663_100008437
213 Ga0070678_100003834
214 Ga0070662_100000436
215 Ga0068867_100006341
216 Ga0068853_100111718
217 Ga0070672_100028921
218 Ga0070665_100000061
219 Ga0068855_100000109
220 Ga0068855_100003872
221 Ga0068856_100000021
222 Ga0068852_100000452
223 Ga0075366_10000116
224 Ga0075366_10016578
225 Ga0097621_100009160
226 Ga0068871_100000817
227 Ga0068865_100000853
228 Ga0105240_10000277
229 Ga0105240_10016240
230 Ga0105240_10047696
231 Ga0111539_10010530
232 Ga0105241_10018605
233 Ga0105241_10031504
234 Ga0105241_10125829
235 Ga0105242_10010662
236 Ga0105237_10000109
237 Ga0105237_10000620
238 Ga0105237_10004714
239 Ga0105237_10015276
240 Ga0105237_10026764
241 Ga0105237_10117371
242 Ga0105237_10180472
243 Ga0105238_10024398
244 Ga0105238_10074995
245 Ga0105239_10000045
246 Ga0105239_10000930
247 Ga0105239_10007302
248 Ga0105239_10026539
249 Ga0157373_10000063
250 Ga0157373_10031995
251 Ga0157371_10000342
252 Ga0157371_10002242
253 Ga0157371_10025640
254 Ga0157371_10050705
255 Ga0157369_10006608
256 Ga0157374_10000450
257 Ga0157374_10011229
258 Ga0157378_10012015
259 Ga0157378_10077484
260 Ga0163162_10000087
261 Ga0163162_10002294
262 Ga0163162_10019707
263 Ga0157372_10002216
264 Ga0157372_10002856
265 Ga0157372_10009188
266 Ga0157372_10010169
267 Ga0157372_10028573
268 Ga0157372_10079348
269 Ga0157372_10150599
270 Ga0157375_10037152
271 Ga0157380_10013511
272 Ga0213872_10031538
273 Ga0209026_1000309
274 Ga0209026_1000965
275 Ga0209233_1005622
276 Ga0209233_1006776
277 Ga0207647_10000079
278 Ga0207647_10000434
279 Ga0207645_10014515
280 Ga0207705_10000233
281 Ga0207654_10006423
282 Ga0207695_10000375
283 Ga0207695_10003303
284 Ga0207695_10061674
285 Ga0207671_10000899
286 Ga0207671_10001386
287 Ga0207671_10002828
288 Ga0207671_10005128
289 Ga0207671_10010368
290 Ga0207671_10012066
291 Ga0207671_10070081
292 Ga0207671_10114490
293 Ga0207657_10050419
294 Ga0207706_10000013
295 Ga0207704_10000576
296 Ga0207661_10044250
297 Ga0207667_10000154
298 Ga0207667_10016527
299 Ga0207667_10019032
300 Ga0207651_10015697
301 Ga0207639_10049338
302 Ga0207639_10072263
303 Ga0207678_10019653
304 Ga0207702_10004769
305 Ga0207648_10010804
306 Ga0207683_10003693
307 Ga0207698_10009425
308 Ga0207698_10058779
309 Ga0268266_10000053
310 Ga0265323_10000060
311 Ga0307517_10000207
312 Ga0307515_10000316
313 Ga0307515_10000782
314 Ga0265338_10042515
315 Ga0265327_10002705
316 Ga0265327_10003956
317 Ga0265316_10003275
318 Ga0307509_10100467
319 Ga0307408_100000514
320 Ga0316579_10018377
321 Ga0316577_10040025
322 Ga0307411_10010573
323 Ga0307507_10000099
324 Ga0307510_10005352
325 Ga0316574_0039371
326 Ga0316584_0004229
327 Ga0316584_0027770
328 Ga0395899_0000025
329 Ga0395899_0000027
330 Ga0395899_0000325
331 Ga0395899_0004831
332 Ga0395900_0002481
333 Ga0395900_0019456
334 Ga0395900_0025386
335 Ga0395898_0008739
336 Ga0395905_0000295
337 Ga0395905_0000729
338 Ga0395905_0031565
339 Ga0395905_0078433
340 Ga0395901_0002249
341 Ga0395901_0009475
342 Ga0436361_0950676
343 Ga0451577_0001069
344 Ga0451577_0063450
345 Ga0453684_0003203
346 Ga0453684_0004939
347 Ga0453684_0010962
348 Ga0453684_0022008
349 Ga0451576_0000002
350 Ga0495650_0000107
351 Ga0495585_0000170
352 Ga0495606_0004389
353 Ga0495606_0007689
354 Ga0495616_0002915
355 Ga0495616_0003081
356 Ga0495648_0037379
357 Ga0495609_0004736
358 Ga0495633_0000593
359 Ga0495633_0011757
360 Ga0495668_0000086
361 Ga0495625_0000021
362 Ga0495625_0000344
363 Ga0495625_0001450
364 Ga0495625_0015218
365 Ga0495625_0015348
366 Ga0495625_0018424
367 Ga0495625_0043094
368 Ga0495649_0000009
369 Ga0495683_0021993
370 Ga0495687_001026
371 Ga0495687_008945
372 Ga0495687_023862
373 Ga0495686_0000107
374 Ga0495686_0001367
375 Ga0495678_008622
376 Ga0501247_002724
377 Ga0501241_000260
378 nmdc:mga0k408_10497_c1
379 nmdc:mga0k408_3647_c1
380 Ga0500618_000016
381 Ga0500622_0000066
382 Ga0500622_0000175
383 Ga0500622_0000179
384 2599479694
385 2852625586
386 2884934586
387 2890807110
388 2919440256
389 2928083751
390 2928152192
391 2932084752
392 2977235612

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13155

Toprim_2

Toprim-like

265

350

0.98

PF01807

zf-CHC2

CHC2 zinc finger

2

99

0.97

PF10410

DnaB_bind

DnaB-helicase binding domain of primase

377

419

0.96

PF13662

Toprim_4

Toprim domain

262

339

0.94

PF08275

DNAG_N

DNA primase catalytic core, N-terminal domain

123

255

0.91

PF01751

Toprim

Toprim domain

263

339

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.9628 2 94
4ee1-assembly1.cif.gz_A the structure of the s. aureus dnag rna polymerase domain bound to ctp and manganese 0.92 107 427
4e2k-assembly1.cif.gz_A the structure of the s. aureus dnag rna polymerase domain 0.9187 107 427
4ee1-assembly1.cif.gz_A the structure of the s. aureus dnag rna polymerase domain bound to ctp and manganese 0.9118 107 427
4e2k-assembly1.cif.gz_A the structure of the s. aureus dnag rna polymerase domain 0.9106 107 427
ID Description Score Start End Superfamily
2a26B01 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;UVR domain 0.9862 598 636 4.10.860.10
af_P9WNW1_1_101_3.90.580.10 Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type domain 0.9676 1 97 3.90.580.10
4e2kA02 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9602 243 366 3.40.1360.10
5gujA02 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.952 243 366 3.40.1360.10
4e2kA02 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.9453 243 366 3.40.1360.10
ID Description Score Start End GO Terms
AF-A0A7Z9IB58-F1-model_v4 DNA primase 0.9682 3 87 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-W3Y5L9-F1-model_v4 deleted 0.9681 3 94
AF-A0A3B8HJB5-F1-model_v4 Zinc finger CHC2-type domain-containing protein 0.9676 6 97 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A351ISM5-F1-model_v4 DNA primase 0.9671 6 87 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A2H0SRN6-F1-model_v4 DNA primase 0.9627 7 94 GO:0003677
GO:0003896
GO:0005737
GO:0008270

Map