F304571
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 198 | 127 | 198 | 86 |
Family's Representative Sequence
| Representative Sequence | 3300026089|Ga0207648_11354993|Ga0207648_113549931 |
| Length | 102 |
| Sequence | MRVFCAAPGAAAGNSGQELQMKLYVGNLSKQITNAQLNDLAIPYGTIVSANVATERSSGESKGFGFVEYSNADEARAAITGLDGRDVNGQALKVNESKPRTS |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 2 | 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) | Metagenome | Rhizosphere |
| 3 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 7 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 9 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 10 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 12 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 13 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 14 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Metagenome | Rhizosphere |
| 18 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 20 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 25 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 26 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 27 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 28 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 29 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 30 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 31 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 32 | 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Metagenome | Rhizosphere |
| 33 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 34 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 35 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 36 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 37 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 38 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 39 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 40 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 41 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 42 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 43 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 44 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 45 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 46 | 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Metagenome | Rhizosphere |
| 47 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 48 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 50 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 51 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 52 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 53 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 54 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 55 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 56 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 57 | 3300007076 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Metagenome | Rhizosphere |
| 58 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 59 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 60 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 62 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 64 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 65 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 66 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 67 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 68 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 69 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 70 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 71 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 72 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 73 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 74 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 75 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 76 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 100 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 101 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 102 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 103 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 104 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 105 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 106 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 107 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 108 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 109 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 110 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 111 | 3300035112 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 | Metagenome | Rhizosphere |
| 112 | 3300035115 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 | Metagenome | Rhizosphere |
| 113 | 3300035117 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 | Metagenome | Rhizosphere |
| 114 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 115 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 116 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 118 | 3300049683 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control | Metagenome | Rhizosphere |
| 119 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 120 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 121 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 123 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 124 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 125 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 126 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 127 | 3300053083 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 100 |
| Metatranscriptomes | 0 |
| Isolates | 0 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0 |
| Nodule | 0 |
| Rhizoplane | 0.51 |
| Rhizosphere | 98.99 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0.51 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0065715_10144077 | 3300005293 | Bacteria | 1812 |
| 2 | Ga0065715_10261170 | 3300005293 | Bacteria | 1137 |
| 3 | Ga0065715_10283465 | 3300005293 | Unclassified | 1066 |
| 4 | Ga0065715_10442944 | 3300005293 | Bacteria | 834 |
| 5 | Ga0065707_10102061 | 3300005295 | Bacteria | 2829 |
| 6 | Ga0070658_10345926 | 3300005327 | Bacteria | 1272 |
| 7 | Ga0070676_10900688 | 3300005328 | Unclassified | 659 |
| 8 | Ga0070676_11486462 | 3300005328 | Bacteria | 521 |
| 9 | Ga0070683_100240204 | 3300005329 | Bacteria | 1723 |
| 10 | Ga0070683_101676299 | 3300005329 | Unclassified | 611 |
| 11 | Ga0070690_100363978 | 3300005330 | Bacteria | 1053 |
| 12 | Ga0070670_100039655 | 3300005331 | Bacteria | 4050 |
| 13 | Ga0070670_101774182 | 3300005331 | Bacteria | 568 |
| 14 | Ga0068869_100013573 | 3300005334 | Bacteria | 5421 |
| 15 | Ga0068869_100183398 | 3300005334 | Bacteria | 1642 |
| 16 | Ga0070680_100022783 | 3300005336 | Bacteria | 4990 |
| 17 | Ga0070682_100000113 | 3300005337 | Bacteria | 71584 |
| 18 | Ga0068868_100007851 | 3300005338 | Bacteria | 7616 |
| 19 | Ga0068868_101941351 | 3300005338 | Unclassified | 558 |
| 20 | Ga0070689_100380512 | 3300005340 | Bacteria | 1189 |
| 21 | Ga0070689_100402374 | 3300005340 | Unclassified | 1157 |
| 22 | Ga0070689_101329584 | 3300005340 | Bacteria | 648 |
| 23 | Ga0070692_10004318 | 3300005345 | Bacteria | 5913 |
| 24 | Ga0070675_100000004 | 3300005354 | Bacteria | 361974 |
| 25 | Ga0070675_100000013 | 3300005354 | Bacteria | 206266 |
| 26 | Ga0070675_101569916 | 3300005354 | Bacteria | 607 |
| 27 | Ga0070675_101841739 | 3300005354 | Bacteria | 558 |
| 28 | Ga0070674_100410936 | 3300005356 | Bacteria | 1108 |
| 29 | Ga0070673_101399145 | 3300005364 | Unclassified | 658 |
| 30 | Ga0070673_102232673 | 3300005364 | Unclassified | 520 |
| 31 | Ga0070709_10202358 | 3300005434 | Bacteria | 1407 |
| 32 | Ga0070709_10811220 | 3300005434 | Unclassified | 735 |
| 33 | Ga0070714_101763176 | 3300005435 | Bacteria | 605 |
| 34 | Ga0070713_100054698 | 3300005436 | Bacteria | 3313 |
| 35 | Ga0070711_100581110 | 3300005439 | Bacteria | 933 |
| 36 | Ga0070705_100871811 | 3300005440 | Unclassified | 722 |
| 37 | Ga0070678_101096303 | 3300005456 | Unclassified | 735 |
| 38 | Ga0070662_100434963 | 3300005457 | Unclassified | 1087 |
| 39 | Ga0068867_100229605 | 3300005459 | Bacteria | 1500 |
| 40 | Ga0070685_10011215 | 3300005466 | Bacteria | 4689 |
| 41 | Ga0070707_100007303 | 3300005468 | Bacteria | 10259 |
| 42 | Ga0070707_100136424 | 3300005468 | Bacteria | 2387 |
| 43 | Ga0070698_100493456 | 3300005471 | Bacteria | 1162 |
| 44 | Ga0070684_101252505 | 3300005535 | Unclassified | 698 |
| 45 | Ga0068853_101232643 | 3300005539 | Unclassified | 722 |
| 46 | Ga0070672_100003298 | 3300005543 | Bacteria | 10451 |
| 47 | Ga0070672_100006411 | 3300005543 | Bacteria | 7909 |
| 48 | Ga0070672_101537950 | 3300005543 | Unclassified | 596 |
| 49 | Ga0070686_100249883 | 3300005544 | Unclassified | 1295 |
| 50 | Ga0070695_100997079 | 3300005545 | Unclassified | 681 |
| 51 | Ga0070696_100717537 | 3300005546 | Bacteria | 816 |
| 52 | Ga0070696_100790023 | 3300005546 | Unclassified | 781 |
| 53 | Ga0070693_100377731 | 3300005547 | Bacteria | 977 |
| 54 | Ga0070693_100885890 | 3300005547 | Bacteria | 668 |
| 55 | Ga0070704_100227045 | 3300005549 | Bacteria | 1521 |
| 56 | Ga0070664_100104188 | 3300005564 | Bacteria | 2470 |
| 57 | Ga0068857_102444488 | 3300005577 | Bacteria | 513 |
| 58 | Ga0068854_101970551 | 3300005578 | Unclassified | 538 |
| 59 | Ga0070702_100013538 | 3300005615 | Bacteria | 4119 |
| 60 | Ga0070702_100043908 | 3300005615 | Bacteria | 2521 |
| 61 | Ga0070702_100112877 | 3300005615 | Bacteria | 1688 |
| 62 | Ga0068852_100525402 | 3300005616 | Unclassified | 1181 |
| 63 | Ga0068864_100000008 | 3300005618 | Bacteria | 390035 |
| 64 | Ga0068864_100000026 | 3300005618 | Bacteria | 243111 |
| 65 | Ga0068861_101702244 | 3300005719 | Unclassified | 624 |
| 66 | Ga0068870_10006096 | 3300005840 | Bacteria | 5297 |
| 67 | Ga0068870_10079500 | 3300005840 | Bacteria | 1809 |
| 68 | Ga0068858_101586988 | 3300005842 | Bacteria | 646 |
| 69 | Ga0070717_10000107 | 3300006028 | Bacteria | 65970 |
| 70 | Ga0070715_10242240 | 3300006163 | Unclassified | 938 |
| 71 | Ga0070716_100046681 | 3300006173 | Bacteria | 2439 |
| 72 | Ga0070716_100096100 | 3300006173 | Bacteria | 1805 |
| 73 | Ga0070716_100546971 | 3300006173 | Bacteria | 862 |
| 74 | Ga0070716_101266316 | 3300006173 | Bacteria | 595 |
| 75 | Ga0097621_100305317 | 3300006237 | Unclassified | 1406 |
| 76 | Ga0068871_101704798 | 3300006358 | Unclassified | 598 |
| 77 | Ga0075428_100002869 | 3300006844 | Bacteria | 18796 |
| 78 | Ga0075428_100801275 | 3300006844 | Bacteria | 1001 |
| 79 | Ga0075428_101060356 | 3300006844 | Bacteria | 857 |
| 80 | Ga0075431_100002845 | 3300006847 | Bacteria | 16743 |
| 81 | Ga0075431_100465042 | 3300006847 | Bacteria | 1259 |
| 82 | Ga0075433_10259456 | 3300006852 | Bacteria | 1541 |
| 83 | Ga0075434_100383196 | 3300006871 | Bacteria | 1427 |
| 84 | Ga0075434_101694504 | 3300006871 | Unclassified | 640 |
| 85 | Ga0075429_100747897 | 3300006880 | Bacteria | 856 |
| 86 | Ga0075429_101124984 | 3300006880 | Unclassified | 686 |
| 87 | Ga0068865_101299948 | 3300006881 | Bacteria | 647 |
| 88 | Ga0075436_100017280 | 3300006914 | Bacteria | 4938 |
| 89 | Ga0075435_100000214 | 3300007076 | Bacteria | 35481 |
| 90 | Ga0075435_100167960 | 3300007076 | Unclassified | 1850 |
| 91 | Ga0105244_10018760 | 3300009036 | Bacteria | 3874 |
| 92 | Ga0105244_10050304 | 3300009036 | Bacteria | 2126 |
| 93 | Ga0105240_10030231 | 3300009093 | Bacteria | 7041 |
| 94 | Ga0111539_10000012 | 3300009094 | Bacteria | 332553 |
| 95 | Ga0105245_10000004 | 3300009098 | Bacteria | 470684 |
| 96 | Ga0105245_10221005 | 3300009098 | Bacteria | 1828 |
| 97 | Ga0114129_10168245 | 3300009147 | Bacteria | 2990 |
| 98 | Ga0114129_11471731 | 3300009147 | Unclassified | 838 |
| 99 | Ga0105243_11474090 | 3300009148 | Unclassified | 703 |
| 100 | Ga0105242_10000124 | 3300009176 | Bacteria | 56723 |
| 101 | Ga0105242_10007099 | 3300009176 | Bacteria | 8648 |
| 102 | Ga0105239_10016337 | 3300010375 | Bacteria | 8208 |
| 103 | Ga0105239_11084488 | 3300010375 | Bacteria | 922 |
| 104 | Ga0105239_11505882 | 3300010375 | Unclassified | 777 |
| 105 | Ga0105246_10034610 | 3300011119 | Bacteria | 3368 |
| 106 | Ga0105246_11399266 | 3300011119 | Unclassified | 653 |
| 107 | Ga0157373_10511025 | 3300013100 | Bacteria | 868 |
| 108 | Ga0157369_10565012 | 3300013105 | Unclassified | 1175 |
| 109 | Ga0157378_10000818 | 3300013297 | Bacteria | 28962 |
| 110 | Ga0157378_10001121 | 3300013297 | Bacteria | 24431 |
| 111 | Ga0157378_10149934 | 3300013297 | Bacteria | 2172 |
| 112 | Ga0157378_11041744 | 3300013297 | Unclassified | 854 |
| 113 | Ga0163162_10005272 | 3300013306 | Bacteria | 12470 |
| 114 | Ga0157372_11549657 | 3300013307 | Unclassified | 763 |
| 115 | Ga0157372_13288030 | 3300013307 | Unclassified | 515 |
| 116 | Ga0157375_10000009 | 3300013308 | Bacteria | 366440 |
| 117 | Ga0157375_10000014 | 3300013308 | Bacteria | 319231 |
| 118 | Ga0157375_10000032 | 3300013308 | Bacteria | 187931 |
| 119 | Ga0163163_11811532 | 3300014325 | Unclassified | 671 |
| 120 | Ga0157380_10004565 | 3300014326 | Bacteria | 9613 |
| 121 | Ga0157380_10030555 | 3300014326 | Bacteria | 4127 |
| 122 | Ga0157377_10000113 | 3300014745 | Bacteria | 55434 |
| 123 | Ga0157377_10236641 | 3300014745 | Bacteria | 1177 |
| 124 | Ga0157377_11015583 | 3300014745 | Bacteria | 629 |
| 125 | Ga0207655_1043655 | 3300025728 | Bacteria | 1892 |
| 126 | Ga0207655_1057521 | 3300025728 | Bacteria | 1526 |
| 127 | Ga0207699_10070503 | 3300025906 | Bacteria | 2134 |
| 128 | Ga0207645_11028675 | 3300025907 | Bacteria | 557 |
| 129 | Ga0207643_10084862 | 3300025908 | Bacteria | 1839 |
| 130 | Ga0207643_10086709 | 3300025908 | Bacteria | 1820 |
| 131 | Ga0207684_11392953 | 3300025910 | Unclassified | 574 |
| 132 | Ga0207695_10067032 | 3300025913 | Bacteria | 3683 |
| 133 | Ga0207695_10267555 | 3300025913 | Bacteria | 1605 |
| 134 | Ga0207663_10895400 | 3300025916 | Bacteria | 709 |
| 135 | Ga0207660_10243246 | 3300025917 | Bacteria | 1418 |
| 136 | Ga0207662_10017770 | 3300025918 | Bacteria | 4026 |
| 137 | Ga0207662_11210161 | 3300025918 | Bacteria | 537 |
| 138 | Ga0207646_10101983 | 3300025922 | Bacteria | 2573 |
| 139 | Ga0207650_10131012 | 3300025925 | Unclassified | 1962 |
| 140 | Ga0207650_11212133 | 3300025925 | Unclassified | 642 |
| 141 | Ga0207659_10000002 | 3300025926 | Bacteria | 619441 |
| 142 | Ga0207659_10000024 | 3300025926 | Bacteria | 140594 |
| 143 | Ga0207687_10000003 | 3300025927 | Bacteria | 875159 |
| 144 | Ga0207687_10000848 | 3300025927 | Bacteria | 20667 |
| 145 | Ga0207687_10151774 | 3300025927 | Bacteria | 1769 |
| 146 | Ga0207700_10072502 | 3300025928 | Bacteria | 2656 |
| 147 | Ga0207644_10730436 | 3300025931 | Unclassified | 826 |
| 148 | Ga0207706_10922672 | 3300025933 | Unclassified | 737 |
| 149 | Ga0207686_10001191 | 3300025934 | Bacteria | 15072 |
| 150 | Ga0207686_10006839 | 3300025934 | Bacteria | 6142 |
| 151 | Ga0207686_11128687 | 3300025934 | Bacteria | 640 |
| 152 | Ga0207709_10711896 | 3300025935 | Unclassified | 804 |
| 153 | Ga0207670_10061646 | 3300025936 | Bacteria | 2560 |
| 154 | Ga0207669_10538676 | 3300025937 | Bacteria | 940 |
| 155 | Ga0207704_10090669 | 3300025938 | Bacteria | 2007 |
| 156 | Ga0207665_10294377 | 3300025939 | Bacteria | 1211 |
| 157 | Ga0207665_10372828 | 3300025939 | Bacteria | 1082 |
| 158 | Ga0207665_10590500 | 3300025939 | Unclassified | 866 |
| 159 | Ga0207665_11242362 | 3300025939 | Unclassified | 594 |
| 160 | Ga0207689_10150343 | 3300025942 | Bacteria | 1919 |
| 161 | Ga0207689_10331553 | 3300025942 | Bacteria | 1264 |
| 162 | Ga0207689_11191806 | 3300025942 | Bacteria | 641 |
| 163 | Ga0207661_11127311 | 3300025944 | Bacteria | 722 |
| 164 | Ga0207679_10210311 | 3300025945 | Bacteria | 1631 |
| 165 | Ga0207677_10000015 | 3300026023 | Bacteria | 173792 |
| 166 | Ga0207703_11794847 | 3300026035 | Bacteria | 589 |
| 167 | Ga0207639_10000028 | 3300026041 | Bacteria | 197736 |
| 168 | Ga0207708_10000021 | 3300026075 | Bacteria | 186005 |
| 169 | Ga0207648_11354993 | 3300026089 | Unclassified | 669 |
| 170 | Ga0207676_10000011 | 3300026095 | Bacteria | 382648 |
| 171 | Ga0207674_10025984 | 3300026116 | Bacteria | 6231 |
| 172 | Ga0207674_10606119 | 3300026116 | Bacteria | 1058 |
| 173 | Ga0207674_11786289 | 3300026116 | Bacteria | 582 |
| 174 | Ga0207675_100078273 | 3300026118 | Bacteria | 3098 |
| 175 | Ga0207683_11092842 | 3300026121 | Unclassified | 740 |
| 176 | Ga0307416_102766796 | 3300032002 | Unclassified | 587 |
| 177 | Ga0373932_0000467 | 3300035112 | Bacteria | 12382 |
| 178 | Ga0373941_0108420 | 3300035115 | Unclassified | 975 |
| 179 | Ga0373953_0263404 | 3300035117 | Bacteria | 750 |
| 180 | Ga0436365_0255704 | 3300039437 | Bacteria | 526 |
| 181 | Ga0451577_0237961 | 3300042876 | Unclassified | 1647 |
| 182 | Ga0451577_0929211 | 3300042876 | Unclassified | 783 |
| 183 | Ga0495582_0483139 | 3300046473 | Bacteria | 716 |
| 184 | Ga0496112_1240737 | 3300048915 | Bacteria | 662 |
| 185 | Ga0501253_163011 | 3300049683 | Bacteria | 570 |
| 186 | nmdc:mga05p37_1356431_c1 | 3300050507 | Unclassified | 720 |
| 187 | nmdc:mga05p37_247967_c1 | 3300050507 | Bacteria | 2137 |
| 188 | nmdc:mga09592_734985_c1 | 3300050508 | Bacteria | 838 |
| 189 | nmdc:mga0qj67_1145251_c1 | 3300050509 | Bacteria | 606 |
| 190 | nmdc:mga06r32_4310_c1 | 3300050510 | Bacteria | 12736 |
| 191 | nmdc:mga06r32_455087_c1 | 3300050510 | Bacteria | 1259 |
| 192 | nmdc:mga0n895_640860_c1 | 3300050512 | Bacteria | 1062 |
| 193 | nmdc:mga0rr50_14340_c1 | 3300050513 | Bacteria | 5194 |
| 194 | nmdc:mga0rr50_38_c1 | 3300050513 | Bacteria | 85286 |
| 195 | nmdc:mga0rr50_99920_c1 | 3300050513 | Bacteria | 2277 |
| 196 | nmdc:mga08x19_13193_c1 | 3300050514 | Bacteria | 4990 |
| 197 | nmdc:mga0a205_669645_c1 | 3300050515 | Unclassified | 888 |
| 198 | Ga0495655_0000983 | 3300053083 | Bacteria | 4423 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300005293 | Ga0065715_10261170 | Ga0065715_102611702 | 81 |
| 2 | 3300005293 | Ga0065715_10283465 | Ga0065715_102834653 | 81 |
| 3 | 3300005334 | Ga0068869_100013573 | Ga0068869_1000135737 | 81 |
| 4 | 3300005543 | Ga0070672_100003298 | Ga0070672_1000032982 | 81 |
| 5 | 3300005543 | Ga0070672_100006411 | Ga0070672_1000064115 | 81 |
| 6 | 3300005543 | Ga0070672_101537950 | Ga0070672_1015379501 | 81 |
| 7 | 3300005544 | Ga0070686_100249883 | Ga0070686_1002498832 | 81 |
| 8 | 3300005549 | Ga0070704_100227045 | Ga0070704_1002270452 | 81 |
| 9 | 3300005615 | Ga0070702_100112877 | Ga0070702_1001128772 | 81 |
| 10 | 3300005618 | Ga0068864_100000008 | Ga0068864_100000008132 | 81 |
| 11 | 3300005840 | Ga0068870_10006096 | Ga0068870_100060965 | 81 |
| 12 | 3300006237 | Ga0097621_100305317 | Ga0097621_1003053173 | 81 |
| 13 | 3300006358 | Ga0068871_101704798 | Ga0068871_1017047981 | 81 |
| 14 | 3300006844 | Ga0075428_100801275 | Ga0075428_1008012752 | 81 |
| 15 | 3300006847 | Ga0075431_100002845 | Ga0075431_1000028454 | 81 |
| 16 | 3300009094 | Ga0111539_10000012 | Ga0111539_10000012293 | 81 |
| 17 | 3300010375 | Ga0105239_11505882 | Ga0105239_115058822 | 81 |
| 18 | 3300011119 | Ga0105246_10034610 | Ga0105246_100346102 | 81 |
| 19 | 3300013297 | Ga0157378_10000818 | Ga0157378_1000081829 | 81 |
| 20 | 3300013297 | Ga0157378_10001121 | Ga0157378_1000112121 | 81 |
| 21 | 3300013308 | Ga0157375_10000009 | Ga0157375_10000009126 | 81 |
| 22 | 3300013308 | Ga0157375_10000014 | Ga0157375_10000014130 | 81 |
| 23 | 3300013308 | Ga0157375_10000032 | Ga0157375_1000003284 | 81 |
| 24 | 3300014326 | Ga0157380_10004565 | Ga0157380_100045653 | 81 |
| 25 | 3300014745 | Ga0157377_11015583 | Ga0157377_110155831 | 81 |
| 26 | 3300026121 | Ga0207683_11092842 | Ga0207683_110928422 | 81 |
| 27 | 3300005459 | Ga0068867_100229605 | Ga0068867_1002296051 | 82 |
| 28 | 3300005577 | Ga0068857_102444488 | Ga0068857_1024444881 | 82 |
| 29 | 3300007076 | Ga0075435_100167960 | Ga0075435_1001679602 | 82 |
| 30 | 3300014326 | Ga0157380_10030555 | Ga0157380_100305554 | 82 |
| 31 | 3300025934 | Ga0207686_11128687 | Ga0207686_111286872 | 82 |
| 32 | 3300026089 | Ga0207648_11354993 | Ga0207648_113549931 | 82 |
| 33 | 3300026116 | Ga0207674_11786289 | Ga0207674_117862891 | 82 |
| 34 | 3300050513 | nmdc:mga0rr50_14340_c1 | nmdc:mga0rr50_14340_c1_4431_4679 | 82 |
| 35 | 3300005340 | Ga0070689_101329584 | Ga0070689_1013295841 | 83 |
| 36 | 3300005354 | Ga0070675_100000004 | Ga0070675_10000000414 | 83 |
| 37 | 3300009036 | Ga0105244_10018760 | Ga0105244_100187603 | 83 |
| 38 | 3300025728 | Ga0207655_1043655 | Ga0207655_10436552 | 83 |
| 39 | 3300025926 | Ga0207659_10000002 | Ga0207659_10000002457 | 83 |
| 40 | 3300025942 | Ga0207689_10331553 | Ga0207689_103315532 | 83 |
| 41 | 3300005293 | Ga0065715_10442944 | Ga0065715_104429442 | 84 |
| 42 | 3300005331 | Ga0070670_101774182 | Ga0070670_1017741821 | 84 |
| 43 | 3300005618 | Ga0068864_100000026 | Ga0068864_100000026132 | 84 |
| 44 | 3300006881 | Ga0068865_101299948 | Ga0068865_1012999481 | 84 |
| 45 | 3300025938 | Ga0207704_10090669 | Ga0207704_100906692 | 84 |
| 46 | 3300026095 | Ga0207676_10000011 | Ga0207676_10000011133 | 84 |
| 47 | 3300005329 | Ga0070683_101676299 | Ga0070683_1016762991 | 85 |
| 48 | 3300005330 | Ga0070690_100363978 | Ga0070690_1003639783 | 85 |
| 49 | 3300005331 | Ga0070670_100039655 | Ga0070670_1000396554 | 85 |
| 50 | 3300005338 | Ga0068868_101941351 | Ga0068868_1019413511 | 85 |
| 51 | 3300005345 | Ga0070692_10004318 | Ga0070692_100043185 | 85 |
| 52 | 3300005535 | Ga0070684_101252505 | Ga0070684_1012525051 | 85 |
| 53 | 3300005546 | Ga0070696_100790023 | Ga0070696_1007900231 | 85 |
| 54 | 3300005547 | Ga0070693_100885890 | Ga0070693_1008858902 | 85 |
| 55 | 3300005564 | Ga0070664_100104188 | Ga0070664_1001041882 | 85 |
| 56 | 3300005578 | Ga0068854_101970551 | Ga0068854_1019705511 | 85 |
| 57 | 3300006173 | Ga0070716_101266316 | Ga0070716_1012663161 | 85 |
| 58 | 3300009098 | Ga0105245_10000004 | Ga0105245_10000004211 | 85 |
| 59 | 3300013307 | Ga0157372_11549657 | Ga0157372_115496572 | 85 |
| 60 | 3300025918 | Ga0207662_11210161 | Ga0207662_112101611 | 85 |
| 61 | 3300025925 | Ga0207650_10131012 | Ga0207650_101310122 | 85 |
| 62 | 3300025927 | Ga0207687_10000003 | Ga0207687_10000003427 | 85 |
| 63 | 3300025939 | Ga0207665_10372828 | Ga0207665_103728282 | 85 |
| 64 | 3300025944 | Ga0207661_11127311 | Ga0207661_111273111 | 85 |
| 65 | 3300025945 | Ga0207679_10210311 | Ga0207679_102103112 | 85 |
| 66 | 3300042876 | Ga0451577_0929211 | Ga0451577_0929211_362_619 | 85 |
| 67 | 3300046473 | Ga0495582_0483139 | Ga0495582_0483139_120_377 | 85 |
| 68 | 3300005293 | Ga0065715_10144077 | Ga0065715_101440772 | 86 |
| 69 | 3300005295 | Ga0065707_10102061 | Ga0065707_101020612 | 86 |
| 70 | 3300005327 | Ga0070658_10345926 | Ga0070658_103459262 | 86 |
| 71 | 3300005328 | Ga0070676_10900688 | Ga0070676_109006881 | 86 |
| 72 | 3300005328 | Ga0070676_11486462 | Ga0070676_114864621 | 86 |
| 73 | 3300005329 | Ga0070683_100240204 | Ga0070683_1002402041 | 86 |
| 74 | 3300005334 | Ga0068869_100183398 | Ga0068869_1001833981 | 86 |
| 75 | 3300005336 | Ga0070680_100022783 | Ga0070680_1000227832 | 86 |
| 76 | 3300005337 | Ga0070682_100000113 | Ga0070682_10000011334 | 86 |
| 77 | 3300005338 | Ga0068868_100007851 | Ga0068868_1000078518 | 86 |
| 78 | 3300005340 | Ga0070689_100380512 | Ga0070689_1003805123 | 86 |
| 79 | 3300005340 | Ga0070689_100402374 | Ga0070689_1004023741 | 86 |
| 80 | 3300005354 | Ga0070675_100000013 | Ga0070675_100000013151 | 86 |
| 81 | 3300005354 | Ga0070675_101569916 | Ga0070675_1015699161 | 86 |
| 82 | 3300005354 | Ga0070675_101841739 | Ga0070675_1018417391 | 86 |
| 83 | 3300005356 | Ga0070674_100410936 | Ga0070674_1004109362 | 86 |
| 84 | 3300005364 | Ga0070673_101399145 | Ga0070673_1013991452 | 86 |
| 85 | 3300005364 | Ga0070673_102232673 | Ga0070673_1022326732 | 86 |
| 86 | 3300005434 | Ga0070709_10202358 | Ga0070709_102023582 | 86 |
| 87 | 3300005434 | Ga0070709_10811220 | Ga0070709_108112202 | 86 |
| 88 | 3300005435 | Ga0070714_101763176 | Ga0070714_1017631761 | 86 |
| 89 | 3300005436 | Ga0070713_100054698 | Ga0070713_1000546984 | 86 |
| 90 | 3300005439 | Ga0070711_100581110 | Ga0070711_1005811101 | 86 |
| 91 | 3300005440 | Ga0070705_100871811 | Ga0070705_1008718112 | 86 |
| 92 | 3300005456 | Ga0070678_101096303 | Ga0070678_1010963031 | 86 |
| 93 | 3300005457 | Ga0070662_100434963 | Ga0070662_1004349632 | 86 |
| 94 | 3300005466 | Ga0070685_10011215 | Ga0070685_100112152 | 86 |
| 95 | 3300005468 | Ga0070707_100007303 | Ga0070707_1000073038 | 86 |
| 96 | 3300005468 | Ga0070707_100136424 | Ga0070707_1001364241 | 86 |
| 97 | 3300005471 | Ga0070698_100493456 | Ga0070698_1004934561 | 86 |
| 98 | 3300005539 | Ga0068853_101232643 | Ga0068853_1012326431 | 86 |
| 99 | 3300005545 | Ga0070695_100997079 | Ga0070695_1009970792 | 86 |
| 100 | 3300005546 | Ga0070696_100717537 | Ga0070696_1007175372 | 86 |
| 101 | 3300005547 | Ga0070693_100377731 | Ga0070693_1003777312 | 86 |
| 102 | 3300005615 | Ga0070702_100013538 | Ga0070702_1000135385 | 86 |
| 103 | 3300005615 | Ga0070702_100043908 | Ga0070702_1000439082 | 86 |
| 104 | 3300005616 | Ga0068852_100525402 | Ga0068852_1005254022 | 86 |
| 105 | 3300005719 | Ga0068861_101702244 | Ga0068861_1017022442 | 86 |
| 106 | 3300005840 | Ga0068870_10079500 | Ga0068870_100795003 | 86 |
| 107 | 3300005842 | Ga0068858_101586988 | Ga0068858_1015869881 | 86 |
| 108 | 3300006028 | Ga0070717_10000107 | Ga0070717_1000010744 | 86 |
| 109 | 3300006163 | Ga0070715_10242240 | Ga0070715_102422402 | 86 |
| 110 | 3300006173 | Ga0070716_100046681 | Ga0070716_1000466811 | 86 |
| 111 | 3300006173 | Ga0070716_100096100 | Ga0070716_1000961001 | 86 |
| 112 | 3300006173 | Ga0070716_100546971 | Ga0070716_1005469712 | 86 |
| 113 | 3300006844 | Ga0075428_100002869 | Ga0075428_1000028696 | 86 |
| 114 | 3300006844 | Ga0075428_101060356 | Ga0075428_1010603562 | 86 |
| 115 | 3300006847 | Ga0075431_100465042 | Ga0075431_1004650423 | 86 |
| 116 | 3300006852 | Ga0075433_10259456 | Ga0075433_102594562 | 86 |
| 117 | 3300006871 | Ga0075434_100383196 | Ga0075434_1003831963 | 86 |
| 118 | 3300006871 | Ga0075434_101694504 | Ga0075434_1016945041 | 86 |
| 119 | 3300006880 | Ga0075429_100747897 | Ga0075429_1007478972 | 86 |
| 120 | 3300006880 | Ga0075429_101124984 | Ga0075429_1011249842 | 86 |
| 121 | 3300006914 | Ga0075436_100017280 | Ga0075436_1000172804 | 86 |
| 122 | 3300007076 | Ga0075435_100000214 | Ga0075435_10000021418 | 86 |
| 123 | 3300009036 | Ga0105244_10050304 | Ga0105244_100503042 | 86 |
| 124 | 3300009093 | Ga0105240_10030231 | Ga0105240_100302313 | 86 |
| 125 | 3300009098 | Ga0105245_10221005 | Ga0105245_102210052 | 86 |
| 126 | 3300009147 | Ga0114129_10168245 | Ga0114129_101682453 | 86 |
| 127 | 3300009147 | Ga0114129_11471731 | Ga0114129_114717311 | 86 |
| 128 | 3300009148 | Ga0105243_11474090 | Ga0105243_114740901 | 86 |
| 129 | 3300009176 | Ga0105242_10000124 | Ga0105242_1000012434 | 86 |
| 130 | 3300009176 | Ga0105242_10007099 | Ga0105242_100070993 | 86 |
| 131 | 3300010375 | Ga0105239_10016337 | Ga0105239_100163379 | 86 |
| 132 | 3300010375 | Ga0105239_11084488 | Ga0105239_110844881 | 86 |
| 133 | 3300011119 | Ga0105246_11399266 | Ga0105246_113992661 | 86 |
| 134 | 3300013100 | Ga0157373_10511025 | Ga0157373_105110252 | 86 |
| 135 | 3300013105 | Ga0157369_10565012 | Ga0157369_105650122 | 86 |
| 136 | 3300013297 | Ga0157378_10149934 | Ga0157378_101499341 | 86 |
| 137 | 3300013297 | Ga0157378_11041744 | Ga0157378_110417441 | 86 |
| 138 | 3300013306 | Ga0163162_10005272 | Ga0163162_100052722 | 86 |
| 139 | 3300013307 | Ga0157372_13288030 | Ga0157372_132880301 | 86 |
| 140 | 3300014325 | Ga0163163_11811532 | Ga0163163_118115321 | 86 |
| 141 | 3300014745 | Ga0157377_10000113 | Ga0157377_1000011334 | 86 |
| 142 | 3300014745 | Ga0157377_10236641 | Ga0157377_102366412 | 86 |
| 143 | 3300025728 | Ga0207655_1057521 | Ga0207655_10575212 | 86 |
| 144 | 3300025906 | Ga0207699_10070503 | Ga0207699_100705033 | 86 |
| 145 | 3300025907 | Ga0207645_11028675 | Ga0207645_110286752 | 86 |
| 146 | 3300025908 | Ga0207643_10084862 | Ga0207643_100848623 | 86 |
| 147 | 3300025908 | Ga0207643_10086709 | Ga0207643_100867092 | 86 |
| 148 | 3300025910 | Ga0207684_11392953 | Ga0207684_113929532 | 86 |
| 149 | 3300025913 | Ga0207695_10067032 | Ga0207695_100670323 | 86 |
| 150 | 3300025913 | Ga0207695_10267555 | Ga0207695_102675552 | 86 |
| 151 | 3300025916 | Ga0207663_10895400 | Ga0207663_108954002 | 86 |
| 152 | 3300025917 | Ga0207660_10243246 | Ga0207660_102432462 | 86 |
| 153 | 3300025918 | Ga0207662_10017770 | Ga0207662_100177705 | 86 |
| 154 | 3300025922 | Ga0207646_10101983 | Ga0207646_101019832 | 86 |
| 155 | 3300025925 | Ga0207650_11212133 | Ga0207650_112121331 | 86 |
| 156 | 3300025926 | Ga0207659_10000024 | Ga0207659_1000002418 | 86 |
| 157 | 3300025927 | Ga0207687_10000848 | Ga0207687_1000084810 | 86 |
| 158 | 3300025927 | Ga0207687_10151774 | Ga0207687_101517741 | 86 |
| 159 | 3300025928 | Ga0207700_10072502 | Ga0207700_100725022 | 86 |
| 160 | 3300025931 | Ga0207644_10730436 | Ga0207644_107304362 | 86 |
| 161 | 3300025933 | Ga0207706_10922672 | Ga0207706_109226722 | 86 |
| 162 | 3300025934 | Ga0207686_10001191 | Ga0207686_100011911 | 86 |
| 163 | 3300025934 | Ga0207686_10006839 | Ga0207686_100068393 | 86 |
| 164 | 3300025935 | Ga0207709_10711896 | Ga0207709_107118961 | 86 |
| 165 | 3300025936 | Ga0207670_10061646 | Ga0207670_100616461 | 86 |
| 166 | 3300025937 | Ga0207669_10538676 | Ga0207669_105386762 | 86 |
| 167 | 3300025939 | Ga0207665_10294377 | Ga0207665_102943772 | 86 |
| 168 | 3300025939 | Ga0207665_10590500 | Ga0207665_105905001 | 86 |
| 169 | 3300025939 | Ga0207665_11242362 | Ga0207665_112423622 | 86 |
| 170 | 3300025942 | Ga0207689_10150343 | Ga0207689_101503432 | 86 |
| 171 | 3300025942 | Ga0207689_11191806 | Ga0207689_111918061 | 86 |
| 172 | 3300026023 | Ga0207677_10000015 | Ga0207677_10000015122 | 86 |
| 173 | 3300026035 | Ga0207703_11794847 | Ga0207703_117948471 | 86 |
| 174 | 3300026041 | Ga0207639_10000028 | Ga0207639_10000028165 | 86 |
| 175 | 3300026075 | Ga0207708_10000021 | Ga0207708_10000021118 | 86 |
| 176 | 3300026116 | Ga0207674_10025984 | Ga0207674_100259842 | 86 |
| 177 | 3300026116 | Ga0207674_10606119 | Ga0207674_106061192 | 86 |
| 178 | 3300026118 | Ga0207675_100078273 | Ga0207675_1000782732 | 86 |
| 179 | 3300032002 | Ga0307416_102766796 | Ga0307416_1027667961 | 86 |
| 180 | 3300035112 | Ga0373932_0000467 | Ga0373932_0000467_2970_3233 | 86 |
| 181 | 3300035115 | Ga0373941_0108420 | Ga0373941_0108420_250_510 | 86 |
| 182 | 3300035117 | Ga0373953_0263404 | Ga0373953_0263404_310_573 | 86 |
| 183 | 3300039437 | Ga0436365_0255704 | Ga0436365_0255704_193_459 | 86 |
| 184 | 3300042876 | Ga0451577_0237961 | Ga0451577_0237961_420_683 | 86 |
| 185 | 3300048915 | Ga0496112_1240737 | Ga0496112_1240737_377_637 | 86 |
| 186 | 3300049683 | Ga0501253_163011 | Ga0501253_163011_218_484 | 86 |
| 187 | 3300050507 | nmdc:mga05p37_1356431_c1 | nmdc:mga05p37_1356431_c1_335_619 | 86 |
| 188 | 3300050507 | nmdc:mga05p37_247967_c1 | nmdc:mga05p37_247967_c1_931_1194 | 86 |
| 189 | 3300050508 | nmdc:mga09592_734985_c1 | nmdc:mga09592_734985_c1_374_640 | 86 |
| 190 | 3300050509 | nmdc:mga0qj67_1145251_c1 | nmdc:mga0qj67_1145251_c1_308_568 | 86 |
| 191 | 3300050510 | nmdc:mga06r32_4310_c1 | nmdc:mga06r32_4310_c1_669_935 | 86 |
| 192 | 3300050510 | nmdc:mga06r32_455087_c1 | nmdc:mga06r32_455087_c1_320_580 | 86 |
| 193 | 3300050512 | nmdc:mga0n895_640860_c1 | nmdc:mga0n895_640860_c1_529_792 | 86 |
| 194 | 3300050513 | nmdc:mga0rr50_38_c1 | nmdc:mga0rr50_38_c1_11986_12249 | 86 |
| 195 | 3300050513 | nmdc:mga0rr50_99920_c1 | nmdc:mga0rr50_99920_c1_1188_1448 | 86 |
| 196 | 3300050514 | nmdc:mga08x19_13193_c1 | nmdc:mga08x19_13193_c1_3947_4210 | 86 |
| 197 | 3300050515 | nmdc:mga0a205_669645_c1 | nmdc:mga0a205_669645_c1_263_547 | 86 |
| 198 | 3300053083 | Ga0495655_0000983 | Ga0495655_0000983_3286_3546 | 86 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5o3j-assembly1.cif.gz_A | crystal structure of tia-1 rrm2 in complex with rna | 0.9758 | 1 | 76 |
| 5ith-assembly1.cif.gz_A | tia-1 rrm2 recognition of target oligonucleotide | 0.9753 | 2 | 77 |
| 3hi9-assembly1.cif.gz_A | the x-ray crystal structure of the first rna recognition motif (rrm1) of the au-rich element (are) binding protein hur at 2.0 angstrom resolution | 0.9741 | 2 | 77 |
| 3ulh-assembly1.cif.gz_A-2 | crystal structure of a rna binding domain of tho complex subunit 4 protein (thoc4) from homo sapiens at 2.54 a resolution | 0.9721 | 2 | 75 |
| 5kvy-assembly1.cif.gz_A | crystal structure of the two tandem rrm domains of puf60 bound to a portion of an adml pre-mrna 3' splice site analog | 0.9701 | 2 | 77 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_A4HTS6_2_104_3.30.70.330 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain | 0.9892 | 2 | 79 | 3.30.70.330 |
| af_A0A0P0WGS4_373_469_3.30.70.330 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain | 0.9887 | 2 | 77 | 3.30.70.330 |
| af_Q4E419_3_118_3.30.70.330 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain | 0.9884 | 2 | 79 | 3.30.70.330 |
| af_A4HXP3_7_111_3.30.70.330 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain | 0.9854 | 2 | 77 | 3.30.70.330 |
| af_A4I4J9_86_166_3.30.70.330 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RRM (RNA recognition motif) domain | 0.9831 | 2 | 60 | 3.30.70.330 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5B6ZRE5-F1-model_v4 | Putative branchpoint-bridging protein | 0.9924 | 2 | 78 |
GO:0003729
GO:0005634 GO:0006397 GO:0008270 GO:0008380 GO:0048024 |
| AF-A0A0K6FWB4-F1-model_v4 | RRM domain-containing protein | 0.9912 | 2 | 80 |
GO:0003723
|
| AF-A0A3P5ZSV2-F1-model_v4 | Branchpoint-bridging protein | 0.9897 | 2 | 78 |
GO:0000398
GO:0005681 GO:0008270 GO:0045131 |
| AF-A0A4S8HCJ3-F1-model_v4 | RNA-binding protein | 0.9889 | 1 | 78 |
GO:0003729
|
| AF-A0A398A2J3-F1-model_v4 | Branchpoint-bridging protein | 0.9886 | 2 | 78 |
GO:0000398
GO:0005681 GO:0008270 GO:0045131 |
Predicted Structure (AlphaFold2)
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