F306155

General Info

Members Datasets Scaffolds Average Seq Length
199 161 399 321

Family's Representative Sequence

Representative Sequence 3300044765|Ga0466970_0000769|Ga0466970_0000769_9137_10225
Length 362
Sequence LQVAFQFPDNRRQPQRQAVPGHRLFFTTFVVMSKYDILIIGGGPIGLACGIAAKQAGLSYVIVEKGALVNSLFNYPLFMTFFSTSERLEIGGAPFMSLAPKPGRQEAIEYYRRVKQMHNLNVHLFEEVKEVKKQYVAVEAPYTVETTKGVYEADKVIISTGFYDIPIYLDVPGEDLPKVSHYYKEPHFYAFQKVLVIGASNSAVDAALETWRKGAEVTMVVRQPAIGERVKYWVKPDIENRIKEGSIKAYFNSSVVAIREGEVDIDTPGGRLTLANDFVLAMTGYRPDFAMLQRFGIDLSDDERKCPTYNPDTMETNQPGMYLAGVVCGGMETHKWFIENSREHADKIIAHILSVKEKIAGG

Samples

Sample ID Description Type Environment
1 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
8 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
9 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
10 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
11 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
12 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
13 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
27 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
28 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
29 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
35 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
40 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
41 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
42 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
48 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
58 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
59 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
60 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
61 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
62 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
70 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
71 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
72 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
73 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
74 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
77 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
78 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
79 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
80 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
81 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
82 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
87 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
88 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
89 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
90 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
91 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
92 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
93 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
94 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
95 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
96 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
99 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
100 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
101 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
102 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
103 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
104 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
105 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
106 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
107 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
108 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
109 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
110 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
111 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
112 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
113 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
114 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
115 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
116 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
117 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
118 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
119 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
120 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
121 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
122 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
123 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
124 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
125 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
126 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
127 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
128 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
129 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
130 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
131 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
132 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
133 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
134 2738541273 Elizabethkingia sp. YR214 Isolate Unclassified
135 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
136 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
137 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
138 2738543014 Elizabethkingia sp. YR191 Isolate Unclassified
139 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
140 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
141 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
142 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
143 2818991444 Filimonas endophytica 3197 Isolate Unclassified
144 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
145 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
146 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
147 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
148 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
149 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
150 2914759650 Rhizosphaericola mali Isolate Rhizosphere
151 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
152 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
153 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
154 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
155 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
156 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
157 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
158 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
159 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
160 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
161 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.41
Metatranscriptomes 0.5
Isolates 17.09

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.58
Nodule 2.01
Rhizoplane 0.5
Rhizosphere 57.29
Stem 0
Stem Tuber 0
Unclassified 5.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466970_0000769 3300044765 Bacteria 15525
2 MBSR1b_contig_7960791 2162886012 Bacteria 1221
3 rootH1_10011238 3300003316 Bacteria 18907
4 rootH1_10073809 3300003316 Bacteria 8113
5 rootH1_10123387 3300003316 Unclassified 2883
6 rootH2_10140863 3300003320 Bacteria 2188
7 rootH2_10204199 3300003320 Bacteria 2696
8 rootL2_10021540 3300003322 Unclassified 4663
9 rootL2_10035533 3300003322 Bacteria 11229
10 rootL2_10181979 3300003322 Unclassified 2169
11 rootH1_10000619 3300003316 Bacteria 3651
12 rootH1_10000619 3300003323 Bacteria 100005
13 rootH1_10106970 3300003323 Unclassified 3768
14 rootH1_10279511 3300003323 Unclassified 3903
15 rootH1_10288785 3300003323 Bacteria 1898
16 JGI25160J50197_1004391 3300003354 Bacteria 6107
17 Ga0006562J51391_1020427 3300003578 Bacteria 1940
18 Ga0055542_1003792 3300003762 Bacteria 3929
19 Ga0055531_10000120 3300003794 Bacteria 87551
20 Ga0065714_10005059 3300005288 Bacteria 4199
21 Ga0065714_10071955 3300005288 Bacteria 3462
22 Ga0065704_10104108 3300005289 Bacteria 2152
23 Ga0065715_10015231 3300005293 Bacteria 1740
24 Ga0065715_10101263 3300005293 Bacteria 3223
25 Ga0070681_10115381 3300005458 Bacteria 2623
26 Ga0070679_100176739 3300005530 Bacteria 2107
27 Ga0068856_100020279 3300005614 Bacteria 6456
28 Ga0068859_100209521 3300005617 Bacteria 2035
29 Ga0068863_100016088 3300005841 Bacteria 7173
30 Ga0068862_100243126 3300005844 Bacteria 1637
31 Ga0070716_100020830 3300006173 Unclassified 3447
32 Ga0068871_100123292 3300006358 Unclassified 2191
33 Ga0075428_100017440 3300006844 Bacteria 7936
34 Ga0075430_100174819 3300006846 Bacteria 1787
35 Ga0075431_100493608 3300006847 Bacteria 1216
36 Ga0097620_100209521 3300006931 Bacteria 2035
37 Ga0099824_1019391 3300006942 Bacteria 5310
38 Ga0079104_1000321 3300006946 Bacteria 60074
39 Ga0099826_10007074 3300006948 Bacteria 8237
40 Ga0105244_10000108 3300009036 Bacteria 86321
41 Ga0111539_10004881 3300009094 Bacteria 17464
42 Ga0105237_10018906 3300009545 Bacteria 7123
43 Ga0105249_10018450 3300009553 Bacteria 6207
44 Ga0105239_10005057 3300010375 Bacteria 15581
45 Ga0157373_10000002 3300013100 Bacteria 750094
46 Ga0157371_10013925 3300013102 Bacteria 6091
47 Ga0157370_10000360 3300013104 Bacteria 57621
48 Ga0157370_10000505 3300013104 Bacteria 48631
49 Ga0157370_10000771 3300013104 Bacteria 40125
50 Ga0157370_10018983 3300013104 Bacteria 6913
51 Ga0157369_10002103 3300013105 Bacteria 24007
52 Ga0163162_10007497 3300013306 Bacteria 10620
53 Ga0163162_10013661 3300013306 Bacteria 7934
54 Ga0163163_10001550 3300014325 Bacteria 19374
55 Ga0157380_10024757 3300014326 Bacteria 4547
56 Ga0157376_10134423 3300014969 Bacteria 2211
57 Ga0182006_1002549 3300015261 Bacteria 9884
58 Ga0163161_10000063 3300017792 Bacteria 109669
59 Ga0163161_10068137 3300017792 Bacteria 2600
60 Ga0163161_10128439 3300017792 Bacteria 1910
61 Ga0209258_100068 3300025242 Bacteria 286288
62 Ga0209148_1000343 3300025254 Bacteria 61260
63 Ga0209050_1001313 3300025298 Bacteria 27883
64 Ga0207426_1000002 3300025302 Bacteria 1249660
65 Ga0209257_1000007 3300025304 Bacteria 1564415
66 Ga0207655_1000128 3300025728 Bacteria 149987
67 Ga0207671_10130973 3300025914 Bacteria 1925
68 Ga0207652_10197961 3300025921 Bacteria 1808
69 Ga0207665_10287772 3300025939 Bacteria 1225
70 Ga0207712_10231484 3300025961 Bacteria 1483
71 Ga0207702_10019554 3300026078 Bacteria 5605
72 Ga0207641_10040090 3300026088 Unclassified 3919
73 Ga0207676_10125390 3300026095 Unclassified 2174
74 Ga0209281_1000244 3300027111 Bacteria 109979
75 Ga0307515_10000094 3300028794 Bacteria 210723
76 Ga0307515_10043593 3300028794 Bacteria 6967
77 Ga0307515_10143577 3300028794 Bacteria 2544
78 Ga0265327_10000597 3300031251 Bacteria 60192
79 Ga0307509_10016117 3300031507 Bacteria 8665
80 Ga0307509_10166560 3300031507 Bacteria 2091
81 Ga0307408_100137633 3300031548 Bacteria 1912
82 Ga0307413_10000439 3300031824 Bacteria 13517
83 Ga0307410_10000191 3300031852 Bacteria 22695
84 Ga0307406_10000143 3300031901 Bacteria 42246
85 Ga0307407_10001412 3300031903 Bacteria 8673
86 Ga0307412_10047735 3300031911 Bacteria 2813
87 Ga0307412_10079120 3300031911 Bacteria 2267
88 Ga0307416_100000418 3300032002 Bacteria 21636
89 Ga0307414_10000086 3300032004 Bacteria 85265
90 Ga0307414_10030859 3300032004 Bacteria 3507
91 Ga0307411_10000001 3300032005 Bacteria 931810
92 Ga0307507_10000010 3300033179 Bacteria 265208
93 Ga0307510_10092245 3300033180 Bacteria 2866
94 Ga0373927_0195483 3300035695 Bacteria 1327
95 Ga0395899_0024578 3300037312 Bacteria 4555
96 Ga0395900_0038212 3300037418 Bacteria 4949
97 Ga0395900_0215460 3300037418 Unclassified 1938
98 Ga0395905_0014877 3300037471 Bacteria 7423
99 Ga0395901_0002612 3300038443 Bacteria 18236
100 Ga0439447_008453 3300041407 Bacteria 3184
101 Ga0439466_0003020 3300041411 Bacteria 6560
102 Ga0451835_0210139 3300041492 Bacteria 1185
103 Ga0451577_0003184 3300042876 Bacteria 18444
104 Ga0466972_0000003 3300044658 Bacteria 391452
105 Ga0453683_0085654 3300044673 Bacteria 1974
106 Ga0453684_0001619 3300044712 Bacteria 61621
107 Ga0453684_0003784 3300044712 Bacteria 33412
108 Ga0451576_0004040 3300045051 Bacteria 19469
109 Ga0495627_001806 3300046453 Bacteria 11405
110 Ga0495638_0000004 3300046460 Bacteria 700795
111 Ga0495585_0001289 3300046492 Bacteria 19978
112 Ga0495607_0006869 3300046501 Bacteria 7938
113 Ga0495606_0018489 3300046507 Bacteria 5222
114 Ga0495606_0022445 3300046507 Bacteria 4598
115 Ga0495606_0039193 3300046507 Bacteria 3197
116 Ga0495616_0010039 3300046513 Bacteria 5496
117 Ga0495643_0000067 3300046522 Bacteria 175403
118 Ga0495648_0001649 3300046524 Bacteria 21669
119 Ga0495609_0042791 3300046538 Bacteria 2034
120 Ga0495668_0000003 3300046616 Bacteria 695023
121 Ga0495625_0001508 3300046660 Bacteria 27981
122 Ga0495625_0003717 3300046660 Bacteria 14877
123 Ga0495625_0022060 3300046660 Bacteria 4888
124 Ga0495614_0003684 3300048089 Bacteria 6877
125 Ga0496115_0014728 3300048918 Bacteria 5925
126 Ga0496116_0000032 3300048919 Bacteria 419997
127 Ga0496117_0258388 3300048920 Bacteria 946
128 Ga0496121_0027156 3300048924 Bacteria 5365
129 Ga0496121_0062395 3300048924 Bacteria 3053
130 Ga0496125_0000024 3300048928 Bacteria 442149
131 Ga0496125_0000059 3300048928 Bacteria 264149
132 Ga0496126_0035261 3300048929 Bacteria 4691
133 Ga0496126_0040837 3300048929 Bacteria 4298
134 Ga0501290_023047 3300049513 Bacteria 861
135 Ga0501202_003291 3300049652 Unclassified 2760
136 Ga0501207_023058 3300049654 Bacteria 1008
137 Ga0501238_000262 3300049671 Bacteria 6991
138 Ga0501249_000037 3300049679 Bacteria 63492
139 Ga0501249_001046 3300049679 Bacteria 5901
140 Ga0501257_006035 3300049686 Bacteria 2683
141 Ga0501266_000019 3300049763 Bacteria 114355
142 Ga0501280_002265 3300049776 Bacteria 3261
143 nmdc:mga08y16_84448_c1 3300050511 Bacteria 3310
144 Ga0500646_0003373 3300053090 Bacteria 4101
145 Ga0500646_0003709 3300053090 Bacteria 3912
146 Ga0500651_0135980 3300053093 Bacteria 1484
147 Ga0500641_0000019 3300053096 Bacteria 123198
148 Ga0500641_0000080 3300053096 Bacteria 38955
149 Ga0500641_0000511 3300053096 Bacteria 13960
150 Ga0500650_0067254 3300053098 Bacteria 1674
151 Ga0500562_000029 3300053108 Bacteria 94705
152 Ga0500607_028363 3300053121 Bacteria 3100
153 Ga0500614_010725 3300053123 Bacteria 1972
154 Ga0500618_000003 3300053125 Bacteria 338706
155 Ga0500658_0000003 3300053134 Bacteria 512506
156 Ga0500559_0033553 3300053136 Bacteria 2210
157 Ga0500577_0000589 3300053142 Bacteria 9367
158 Ga0500616_0000015 3300053153 Bacteria 633259
159 Ga0500616_0029893 3300053153 Bacteria 2995
160 Ga0500616_0078164 3300053153 Bacteria 1669
161 Ga0500622_0000075 3300053156 Bacteria 109513
162 Ga0500622_0000086 3300053156 Bacteria 99366
163 Ga0500622_0001004 3300053156 Bacteria 23799
164 Ga0500624_000269 3300053157 Bacteria 18098
165 Ga0500584_012588 3300053726 Bacteria 3850
166 Ga0500645_018093 3300053730 Bacteria 2203
167 2513235979 2513020052 Bacteria 5120511
168 2520882361 2519899754 Bacteria 5336938
169 2644012974 2643221600 Bacteria 5530138
170 2644372283 2643221667 Bacteria 5627472
171 2644642709 2643221716 Bacteria 4986332
172 2644684755 2643221725 Bacteria 5087956
173 2738701701 2738541273 Bacteria 4048577
174 2738732595 2738541279 Bacteria 6149495
175 2738765160 2738541285 Bacteria 6150075
176 2739214175 2738543007 Bacteria 6149845
177 2739255999 2738543014 Bacteria 4048139
178 2740004168 2739367857 Bacteria 5433684
179 2740008985 2739367858 Bacteria 5432813
180 2802653688 2802428842 Bacteria 4926114
181 2817416360 2816332280 Bacteria 5109718
182 2819588651 2818991444 Bacteria 6968812
183 2857615048 2857613821 Bacteria 4917088
184 2857618751 2857618242 Bacteria 5635925
185 2881250353 2881247448 Bacteria 3717788
186 2903896800 2903895155 Bacteria 5258610
187 2904422897 2904419702 Bacteria 5166287
188 2904557164 2904555929 Bacteria 5218588
189 2914760141 2914759650 Bacteria 4701441
190 2919195216 2919191525 Bacteria 5765973
191 2919685983 2919683626 Bacteria 5534354
192 2929153649 2929150217 Bacteria 5462483
193 2929157668 2929154850 Bacteria 6753285
194 2958461204 2958458903 Bacteria 5301041
195 2958515637 2958512119 Bacteria 4528530
196 2977270314 2977268062 Bacteria 5243061
197 8054309981 8054307821 Bacteria 5212224
198 8055422029 8055419101 Bacteria 5289643
199 8055593311 8055592153 Bacteria 5961247
200 8056443867 8056440228 Bacteria 4946504
201 Ga0466970_0000769
202 MBSR1b_contig_7960791
203 rootH1_10011238
204 rootH1_10073809
205 rootH1_10123387
206 rootH2_10140863
207 rootH2_10204199
208 rootL2_10021540
209 rootL2_10035533
210 rootL2_10181979
211 rootH1_10000619
212 rootH1_10106970
213 rootH1_10279511
214 rootH1_10288785
215 JGI25160J50197_1004391
216 Ga0006562J51391_1020427
217 Ga0055542_1003792
218 Ga0055531_10000120
219 Ga0065714_10005059
220 Ga0065714_10071955
221 Ga0065704_10104108
222 Ga0065715_10015231
223 Ga0065715_10101263
224 Ga0070681_10115381
225 Ga0070679_100176739
226 Ga0068856_100020279
227 Ga0068859_100209521
228 Ga0068863_100016088
229 Ga0068862_100243126
230 Ga0070716_100020830
231 Ga0068871_100123292
232 Ga0075428_100017440
233 Ga0075430_100174819
234 Ga0075431_100493608
235 Ga0097620_100209521
236 Ga0099824_1019391
237 Ga0079104_1000321
238 Ga0099826_10007074
239 Ga0105244_10000108
240 Ga0111539_10004881
241 Ga0105237_10018906
242 Ga0105249_10018450
243 Ga0105239_10005057
244 Ga0157373_10000002
245 Ga0157371_10013925
246 Ga0157370_10000360
247 Ga0157370_10000505
248 Ga0157370_10000771
249 Ga0157370_10018983
250 Ga0157369_10002103
251 Ga0163162_10007497
252 Ga0163162_10013661
253 Ga0163163_10001550
254 Ga0157380_10024757
255 Ga0157376_10134423
256 Ga0182006_1002549
257 Ga0163161_10000063
258 Ga0163161_10068137
259 Ga0163161_10128439
260 Ga0209258_100068
261 Ga0209148_1000343
262 Ga0209050_1001313
263 Ga0207426_1000002
264 Ga0209257_1000007
265 Ga0207655_1000128
266 Ga0207671_10130973
267 Ga0207652_10197961
268 Ga0207665_10287772
269 Ga0207712_10231484
270 Ga0207702_10019554
271 Ga0207641_10040090
272 Ga0207676_10125390
273 Ga0209281_1000244
274 Ga0307515_10000094
275 Ga0307515_10043593
276 Ga0307515_10143577
277 Ga0265327_10000597
278 Ga0307509_10016117
279 Ga0307509_10166560
280 Ga0307408_100137633
281 Ga0307413_10000439
282 Ga0307410_10000191
283 Ga0307406_10000143
284 Ga0307407_10001412
285 Ga0307412_10047735
286 Ga0307412_10079120
287 Ga0307416_100000418
288 Ga0307414_10000086
289 Ga0307414_10030859
290 Ga0307411_10000001
291 Ga0307507_10000010
292 Ga0307510_10092245
293 Ga0373927_0195483
294 Ga0395899_0024578
295 Ga0395900_0038212
296 Ga0395900_0215460
297 Ga0395905_0014877
298 Ga0395901_0002612
299 Ga0439447_008453
300 Ga0439466_0003020
301 Ga0451835_0210139
302 Ga0451577_0003184
303 Ga0466972_0000003
304 Ga0453683_0085654
305 Ga0453684_0001619
306 Ga0453684_0003784
307 Ga0451576_0004040
308 Ga0495627_001806
309 Ga0495638_0000004
310 Ga0495585_0001289
311 Ga0495607_0006869
312 Ga0495606_0018489
313 Ga0495606_0022445
314 Ga0495606_0039193
315 Ga0495616_0010039
316 Ga0495643_0000067
317 Ga0495648_0001649
318 Ga0495609_0042791
319 Ga0495668_0000003
320 Ga0495625_0001508
321 Ga0495625_0003717
322 Ga0495625_0022060
323 Ga0495614_0003684
324 Ga0496115_0014728
325 Ga0496116_0000032
326 Ga0496117_0258388
327 Ga0496121_0027156
328 Ga0496121_0062395
329 Ga0496125_0000024
330 Ga0496125_0000059
331 Ga0496126_0035261
332 Ga0496126_0040837
333 Ga0501290_023047
334 Ga0501202_003291
335 Ga0501207_023058
336 Ga0501238_000262
337 Ga0501249_000037
338 Ga0501249_001046
339 Ga0501257_006035
340 Ga0501266_000019
341 Ga0501280_002265
342 nmdc:mga08y16_84448_c1
343 Ga0500646_0003373
344 Ga0500646_0003709
345 Ga0500651_0135980
346 Ga0500641_0000019
347 Ga0500641_0000080
348 Ga0500641_0000511
349 Ga0500650_0067254
350 Ga0500562_000029
351 Ga0500607_028363
352 Ga0500614_010725
353 Ga0500618_000003
354 Ga0500658_0000003
355 Ga0500559_0033553
356 Ga0500577_0000589
357 Ga0500616_0000015
358 Ga0500616_0029893
359 Ga0500616_0078164
360 Ga0500622_0000075
361 Ga0500622_0000086
362 Ga0500622_0001004
363 Ga0500624_000269
364 Ga0500584_012588
365 Ga0500645_018093
366 2513235979
367 2520882361
368 2644012974
369 2644372283
370 2644642709
371 2644684755
372 2738701701
373 2738732595
374 2738765160
375 2739214175
376 2739255999
377 2740004168
378 2740008985
379 2802653688
380 2817416360
381 2819588651
382 2857615048
383 2857618751
384 2881250353
385 2903896800
386 2904422897
387 2904557164
388 2914760141
389 2919195216
390 2919685983
391 2929153649
392 2929157668
393 2958461204
394 2958515637
395 2977270314
396 8054309981
397 8055422029
398 8055593311
399 8056443867

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00890

FAD_binding_2

FAD binding domain

36

75

0.93

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

193

267

0.92

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

38

325

0.92

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

35

342

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1i8t-assembly1.cif.gz_B structure of udp-galactopyranose mutase from e.coli 0.9798 4 35
7a76-assembly1.cif.gz_C bacillithiol disulfide reductase bdr (ypda) from bacillus cereus 0.9689 1 320
7a7b-assembly1.cif.gz_D bacillithiol disulfide reductase bdr (ypda) from staphylococcus aureus 0.9643 1 320
7a76-assembly1.cif.gz_C bacillithiol disulfide reductase bdr (ypda) from bacillus cereus 0.963 1 320
7a7b-assembly1.cif.gz_D bacillithiol disulfide reductase bdr (ypda) from staphylococcus aureus 0.9585 1 320
ID Description Score Start End Superfamily
af_Q2FYF3_156_325_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9618 158 320 3.50.50.60
af_Q2FYF3_1_146_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9617 1 147 3.50.50.60
af_Q2FYF3_1_146_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9554 1 147 3.50.50.60
af_Q2FZ31_2_179_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9424 158 190 3.50.50.60
af_Q46808_105_253_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9313 6 34 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7C5R3F2-F1-model_v4 YpdA family bacillithiol disulfide reductase 0.9869 95 320 GO:0016491
AF-A0A376DR97-F1-model_v4 Uncharacterized oxidoreductase CzcO (EC 1.-.-.-) 0.9859 1 194 GO:0004497
GO:0050660
AF-A0A3M1KW72-F1-model_v4 YpdA family putative bacillithiol disulfide reductase 0.9857 1 254 GO:0004497
GO:0050660
AF-A0A2S1QD44-F1-model_v4 YpdA family putative bacillithiol disulfide reductase 0.9847 2 321 GO:0016491
AF-A0A0D5BSF5-F1-model_v4 deleted 0.9831 1 320

Map