F306997

General Info

Members Datasets Scaffolds Average Seq Length
200 140 400 255

Family's Representative Sequence

Representative Sequence 3300006847|Ga0075431_100076134|Ga0075431_1000761342
Length 294
Sequence MTQRRPHERKTTNETKITWRLGVFAVQIRTVKYTYSDLAKMIDHSLLNPAMTDRELEDGCRLAATYGVASVCIKPYAVKRAAELLKGTGVLVGAVIGFPHGNSCTESKRYETELACKEGAAEIDMVINIGKALSGDWNYVERDIQSVCGEAHQRGAKVKVILENDYLVNGGAGLSSDDFKRKLCQIAERAGADWVKTSTGYGFVKQPDGSYNYKGATEHDLALMRAGVSPKVQVKAAGGVRDLDGLIKVRDLGATRCGATATAAMMDEYRKREAAEKSGQSAMAGAGKIGAGGY

Samples

Sample ID Description Type Environment
1 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
17 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
80 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
84 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
85 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
86 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
87 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
88 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
89 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
90 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
91 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
92 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
93 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
94 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
95 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
96 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
97 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
98 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
99 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
100 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
101 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
102 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
103 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
104 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
105 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
106 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
107 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
108 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
109 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
110 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
111 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
112 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
113 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
114 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
115 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
116 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
117 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
118 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
119 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
120 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
121 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
122 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
123 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
124 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
125 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
126 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
127 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
128 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
129 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
130 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
131 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
132 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
133 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
134 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
135 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
136 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
137 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
138 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
139 2684623219 Planctomyces sp. SH-PL14 Isolate Unclassified
140 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.5
Metatranscriptomes 0.5
Isolates 1

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1
Nodule 0
Rhizoplane 0
Rhizosphere 98.5
Stem 0
Stem Tuber 0
Unclassified 13.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075431_100076134 3300006847 Bacteria 3463
2 Ga0065712_10014060 3300005290 Bacteria 2163
3 Ga0065715_10142630 3300005293 Unclassified 1831
4 Ga0070676_10020995 3300005328 Bacteria 3654
5 Ga0070670_100055669 3300005331 Bacteria 3395
6 Ga0068868_100148619 3300005338 Bacteria 1928
7 Ga0070660_100012446 3300005339 Bacteria 6075
8 Ga0070660_100061414 3300005339 Bacteria 2918
9 Ga0070689_100028155 3300005340 Bacteria 4245
10 Ga0070689_100114035 3300005340 Bacteria 2153
11 Ga0070687_100317980 3300005343 Bacteria 993
12 Ga0070661_100189261 3300005344 Bacteria 1569
13 Ga0070668_100037497 3300005347 Bacteria 3701
14 Ga0070669_100002748 3300005353 Bacteria 12690
15 Ga0070673_100016600 3300005364 Bacteria 5211
16 Ga0070688_100001660 3300005365 Bacteria 11127
17 Ga0070688_100043349 3300005365 Bacteria 2771
18 Ga0070667_100185688 3300005367 Bacteria 1840
19 Ga0070713_100059669 3300005436 Bacteria 3187
20 Ga0070701_10180477 3300005438 Unclassified 1235
21 Ga0070662_100053607 3300005457 Bacteria 2920
22 Ga0068853_100000010 3300005539 Bacteria 249824
23 Ga0070686_100008613 3300005544 Bacteria 5716
24 Ga0068855_100152878 3300005563 Bacteria 2623
25 Ga0068855_100339180 3300005563 Bacteria 1657
26 Ga0068857_100053078 3300005577 Unclassified 3597
27 Ga0068857_100068964 3300005577 Bacteria 3148
28 Ga0068854_100041933 3300005578 Bacteria 3236
29 Ga0068854_100273479 3300005578 Bacteria 1357
30 Ga0068854_100305010 3300005578 Bacteria 1289
31 Ga0068852_100207441 3300005616 Bacteria 1857
32 Ga0068852_100301022 3300005616 Bacteria 1552
33 Ga0068859_100145357 3300005617 Unclassified 2446
34 Ga0068859_100640231 3300005617 Bacteria 1155
35 Ga0068870_10009113 3300005840 Bacteria 4497
36 Ga0068863_100520314 3300005841 Unclassified 1173
37 Ga0068860_100546777 3300005843 Unclassified 1160
38 Ga0068862_100013941 3300005844 Bacteria 6663
39 Ga0070716_100084930 3300006173 Bacteria 1900
40 Ga0075433_10000394 3300006852 Bacteria 27749
41 Ga0075434_100028825 3300006871 Bacteria 5459
42 Ga0068865_100128961 3300006881 Bacteria 1892
43 Ga0097620_100145369 3300006931 Unclassified 2446
44 Ga0097620_100640265 3300006931 Bacteria 1155
45 Ga0105240_10007599 3300009093 Bacteria 15703
46 Ga0105240_10052781 3300009093 Bacteria 5108
47 Ga0105240_10368661 3300009093 Bacteria 1624
48 Ga0111539_10210995 3300009094 Bacteria 2263
49 Ga0111539_10345704 3300009094 Bacteria 1731
50 Ga0114129_11238719 3300009147 Bacteria 928
51 Ga0105242_10037845 3300009176 Unclassified 3877
52 Ga0105237_10005133 3300009545 Bacteria 14833
53 Ga0105249_10062407 3300009553 Bacteria 3422
54 Ga0105239_10835614 3300010375 Bacteria 1056
55 Ga0157370_10095612 3300013104 Bacteria 2787
56 Ga0157369_10191574 3300013105 Bacteria 2148
57 Ga0163162_10178575 3300013306 Bacteria 2249
58 Ga0157375_10016530 3300013308 Bacteria 6633
59 Ga0157375_10570399 3300013308 Bacteria 1292
60 Ga0157380_10002250 3300014326 Bacteria 12979
61 Ga0157380_10243382 3300014326 Bacteria 1623
62 Ga0157380_10813251 3300014326 Bacteria 953
63 Ga0157377_10004500 3300014745 Bacteria 6429
64 Ga0157379_10120816 3300014968 Bacteria 2356
65 Ga0157376_10667125 3300014969 Bacteria 1042
66 Ga0224712_10066750 3300022467 Bacteria 1449
67 Ga0207647_10251780 3300025904 Bacteria 1013
68 Ga0207645_10046843 3300025907 Unclassified 2761
69 Ga0207643_10011953 3300025908 Bacteria 4687
70 Ga0207695_10042694 3300025913 Unclassified 4839
71 Ga0207695_10341238 3300025913 Bacteria 1386
72 Ga0207671_10028786 3300025914 Bacteria 4150
73 Ga0207662_10300920 3300025918 Bacteria 1066
74 Ga0207657_10096765 3300025919 Bacteria 2455
75 Ga0207649_10295861 3300025920 Bacteria 1182
76 Ga0207650_10052506 3300025925 Bacteria 3020
77 Ga0207659_10026569 3300025926 Bacteria 3907
78 Ga0207700_10045090 3300025928 Bacteria 3251
79 Ga0207706_10090451 3300025933 Bacteria 2691
80 Ga0207686_10032989 3300025934 Unclassified 3087
81 Ga0207704_10097346 3300025938 Bacteria 1951
82 Ga0207691_10065781 3300025940 Bacteria 3280
83 Ga0207689_10072885 3300025942 Bacteria 2821
84 Ga0207667_10050365 3300025949 Bacteria 4395
85 Ga0207712_10168981 3300025961 Bacteria 1707
86 Ga0207668_10306210 3300025972 Bacteria 1313
87 Ga0207640_10198210 3300025981 Bacteria 1519
88 Ga0207640_10371246 3300025981 Bacteria 1156
89 Ga0207658_10278575 3300025986 Unclassified 1433
90 Ga0207658_10414130 3300025986 Bacteria 1187
91 Ga0207677_10549980 3300026023 Unclassified 1006
92 Ga0207703_10611592 3300026035 Bacteria 1031
93 Ga0207639_10000018 3300026041 Bacteria 250081
94 Ga0207708_10378883 3300026075 Bacteria 1166
95 Ga0207674_10057375 3300026116 Bacteria 3947
96 Ga0207674_10209274 3300026116 Unclassified 1899
97 Ga0207675_100001207 3300026118 Bacteria 25729
98 Ga0207698_10065525 3300026142 Bacteria 2854
99 Ga0209998_10000578 3300027717 Bacteria 9847
100 Ga0209998_10037620 3300027717 Bacteria 1090
101 Ga0209974_10029736 3300027876 Bacteria 1810
102 Ga0268265_10003503 3300028380 Bacteria 11231
103 Ga0268264_10477868 3300028381 Unclassified 1212
104 Ga0265337_1000534 3300028556 Bacteria 20228
105 Ga0265337_1002187 3300028556 Bacteria 9148
106 Ga0265326_10019618 3300028558 Unclassified 1941
107 Ga0265319_1024350 3300028563 Bacteria 2180
108 Ga0265334_10029480 3300028573 Bacteria 2201
109 Ga0265334_10089750 3300028573 Bacteria 1122
110 Ga0265323_10000295 3300028653 Bacteria 28813
111 Ga0265323_10067879 3300028653 Unclassified 1225
112 Ga0265323_10076555 3300028653 Bacteria 1135
113 Ga0265322_10000465 3300028654 Bacteria 16233
114 Ga0265336_10000950 3300028666 Bacteria 14550
115 Ga0265338_10000274 3300028800 Bacteria 93897
116 Ga0265338_10002430 3300028800 Bacteria 27987
117 Ga0265338_10012209 3300028800 Bacteria 9811
118 Ga0265338_10014508 3300028800 Bacteria 8762
119 Ga0265338_10016039 3300028800 Bacteria 8183
120 Ga0265338_10035801 3300028800 Unclassified 4762
121 Ga0265324_10009883 3300029957 Bacteria 3706
122 Ga0265324_10013469 3300029957 Unclassified 3051
123 Ga0265332_10017247 3300031238 Bacteria 3186
124 Ga0265332_10035689 3300031238 Bacteria 2159
125 Ga0265328_10010093 3300031239 Bacteria 3816
126 Ga0265320_10021882 3300031240 Bacteria 3432
127 Ga0265320_10036957 3300031240 Bacteria 2464
128 Ga0265329_10011562 3300031242 Bacteria 3204
129 Ga0265329_10016368 3300031242 Bacteria 2571
130 Ga0265339_10004023 3300031249 Bacteria 10158
131 Ga0265339_10008519 3300031249 Bacteria 6520
132 Ga0265327_10160521 3300031251 Bacteria 1038
133 Ga0265316_10006444 3300031344 Bacteria 11213
134 Ga0265316_10019556 3300031344 Bacteria 5785
135 Ga0265316_10023732 3300031344 Bacteria 5150
136 Ga0265316_10148750 3300031344 Unclassified 1755
137 Ga0265313_10004317 3300031595 Bacteria 11001
138 Ga0265313_10037512 3300031595 Bacteria 2422
139 Ga0265314_10000042 3300031711 Bacteria 215775
140 Ga0265314_10021784 3300031711 Bacteria 4920
141 Ga0265314_10066632 3300031711 Bacteria 2428
142 Ga0265342_10005452 3300031712 Bacteria 9693
143 Ga0265342_10079526 3300031712 Bacteria 1896
144 Ga0373926_0045921 3300035083 Bacteria 1567
145 Ga0373923_0089421 3300035111 Bacteria 1345
146 Ga0373946_0010439 3300035171 Bacteria 3437
147 Ga0373955_0029086 3300035172 Unclassified 2871
148 Ga0373935_0006666 3300035692 Bacteria 6899
149 Ga0373947_0007812 3300035725 Bacteria 6178
150 Ga0373937_0039417 3300036401 Bacteria 4306
151 Ga0373937_0343863 3300036401 Unclassified 1413
152 Ga0373925_0009699 3300037068 Bacteria 7004
153 Ga0373925_0349671 3300037068 Bacteria 1200
154 Ga0395900_0239428 3300037418 Bacteria 1821
155 Ga0395898_0317092 3300037466 Bacteria 1487
156 Ga0395905_0131153 3300037471 Unclassified 2357
157 Ga0395901_0612694 3300038443 Bacteria 1096
158 Ga0450894_000308 3300042131 Bacteria 8757
159 Ga0450899_012633 3300042135 Bacteria 949
160 Ga0450909_007410 3300042185 Bacteria 1588
161 Ga0451577_0000910 3300042876 Bacteria 43577
162 Ga0451577_0002321 3300042876 Bacteria 22938
163 Ga0451577_0108357 3300042876 Unclassified 2484
164 Ga0451577_0113954 3300042876 Bacteria 2420
165 Ga0451577_0191714 3300042876 Unclassified 1844
166 Ga0451577_0352112 3300042876 Unclassified 1336
167 Ga0453684_0000010 3300044712 Bacteria 1133422
168 Ga0453684_0004273 3300044712 Bacteria 30482
169 Ga0453684_0022009 3300044712 Bacteria 9484
170 Ga0453684_0104985 3300044712 Bacteria 3448
171 Ga0453684_0396388 3300044712 Bacteria 1547
172 Ga0451576_0031722 3300045051 Bacteria 5632
173 Ga0451576_0164152 3300045051 Bacteria 2318
174 Ga0451576_0168671 3300045051 Bacteria 2285
175 Ga0451576_0241456 3300045051 Bacteria 1887
176 Ga0451576_0589338 3300045051 Bacteria 1168
177 Ga0495582_0018258 3300046473 Bacteria 3838
178 Ga0495639_0059609 3300046475 Bacteria 1747
179 Ga0495630_0000441 3300046517 Bacteria 31615
180 Ga0495630_0030346 3300046517 Bacteria 4021
181 Ga0495666_0000586 3300046526 Bacteria 16276
182 Ga0495666_0118371 3300046526 Bacteria 1241
183 Ga0495665_0081704 3300046531 Bacteria 1699
184 Ga0495640_0045524 3300046533 Bacteria 3044
185 Ga0495586_0001176 3300046535 Bacteria 14677
186 Ga0495635_0070721 3300046663 Unclassified 2392
187 Ga0495658_0009580 3300046683 Bacteria 4829
188 Ga0495658_0331033 3300046683 Bacteria 966
189 Ga0495674_0009414 3300047319 Bacteria 9282
190 Ga0501073_0068173 3300049589 Bacteria 2480
191 Ga0501074_0172078 3300049590 Bacteria 1546
192 Ga0501077_0118989 3300049593 Bacteria 1674
193 Ga0501080_0210232 3300049742 Bacteria 1783
194 nmdc:mga0k408_346614_c1 3300050493 Eukaryota 885
195 nmdc:mga09592_20684_c1 3300050508 Bacteria 5415
196 nmdc:mga06r32_70201_c1 3300050510 Bacteria 3387
197 nmdc:mga08y16_34425_c1 3300050511 Bacteria 5320
198 Ga0500568_0068209 3300053139 Bacteria 1365
199 2687239486 2684623219 Bacteria 8442773
200 2966922905 2966921586 Bacteria 3092803
201 Ga0075431_100076134
202 Ga0065712_10014060
203 Ga0065715_10142630
204 Ga0070676_10020995
205 Ga0070670_100055669
206 Ga0068868_100148619
207 Ga0070660_100012446
208 Ga0070660_100061414
209 Ga0070689_100028155
210 Ga0070689_100114035
211 Ga0070687_100317980
212 Ga0070661_100189261
213 Ga0070668_100037497
214 Ga0070669_100002748
215 Ga0070673_100016600
216 Ga0070688_100001660
217 Ga0070688_100043349
218 Ga0070667_100185688
219 Ga0070713_100059669
220 Ga0070701_10180477
221 Ga0070662_100053607
222 Ga0068853_100000010
223 Ga0070686_100008613
224 Ga0068855_100152878
225 Ga0068855_100339180
226 Ga0068857_100053078
227 Ga0068857_100068964
228 Ga0068854_100041933
229 Ga0068854_100273479
230 Ga0068854_100305010
231 Ga0068852_100207441
232 Ga0068852_100301022
233 Ga0068859_100145357
234 Ga0068859_100640231
235 Ga0068870_10009113
236 Ga0068863_100520314
237 Ga0068860_100546777
238 Ga0068862_100013941
239 Ga0070716_100084930
240 Ga0075433_10000394
241 Ga0075434_100028825
242 Ga0068865_100128961
243 Ga0097620_100145369
244 Ga0097620_100640265
245 Ga0105240_10007599
246 Ga0105240_10052781
247 Ga0105240_10368661
248 Ga0111539_10210995
249 Ga0111539_10345704
250 Ga0114129_11238719
251 Ga0105242_10037845
252 Ga0105237_10005133
253 Ga0105249_10062407
254 Ga0105239_10835614
255 Ga0157370_10095612
256 Ga0157369_10191574
257 Ga0163162_10178575
258 Ga0157375_10016530
259 Ga0157375_10570399
260 Ga0157380_10002250
261 Ga0157380_10243382
262 Ga0157380_10813251
263 Ga0157377_10004500
264 Ga0157379_10120816
265 Ga0157376_10667125
266 Ga0224712_10066750
267 Ga0207647_10251780
268 Ga0207645_10046843
269 Ga0207643_10011953
270 Ga0207695_10042694
271 Ga0207695_10341238
272 Ga0207671_10028786
273 Ga0207662_10300920
274 Ga0207657_10096765
275 Ga0207649_10295861
276 Ga0207650_10052506
277 Ga0207659_10026569
278 Ga0207700_10045090
279 Ga0207706_10090451
280 Ga0207686_10032989
281 Ga0207704_10097346
282 Ga0207691_10065781
283 Ga0207689_10072885
284 Ga0207667_10050365
285 Ga0207712_10168981
286 Ga0207668_10306210
287 Ga0207640_10198210
288 Ga0207640_10371246
289 Ga0207658_10278575
290 Ga0207658_10414130
291 Ga0207677_10549980
292 Ga0207703_10611592
293 Ga0207639_10000018
294 Ga0207708_10378883
295 Ga0207674_10057375
296 Ga0207674_10209274
297 Ga0207675_100001207
298 Ga0207698_10065525
299 Ga0209998_10000578
300 Ga0209998_10037620
301 Ga0209974_10029736
302 Ga0268265_10003503
303 Ga0268264_10477868
304 Ga0265337_1000534
305 Ga0265337_1002187
306 Ga0265326_10019618
307 Ga0265319_1024350
308 Ga0265334_10029480
309 Ga0265334_10089750
310 Ga0265323_10000295
311 Ga0265323_10067879
312 Ga0265323_10076555
313 Ga0265322_10000465
314 Ga0265336_10000950
315 Ga0265338_10000274
316 Ga0265338_10002430
317 Ga0265338_10012209
318 Ga0265338_10014508
319 Ga0265338_10016039
320 Ga0265338_10035801
321 Ga0265324_10009883
322 Ga0265324_10013469
323 Ga0265332_10017247
324 Ga0265332_10035689
325 Ga0265328_10010093
326 Ga0265320_10021882
327 Ga0265320_10036957
328 Ga0265329_10011562
329 Ga0265329_10016368
330 Ga0265339_10004023
331 Ga0265339_10008519
332 Ga0265327_10160521
333 Ga0265316_10006444
334 Ga0265316_10019556
335 Ga0265316_10023732
336 Ga0265316_10148750
337 Ga0265313_10004317
338 Ga0265313_10037512
339 Ga0265314_10000042
340 Ga0265314_10021784
341 Ga0265314_10066632
342 Ga0265342_10005452
343 Ga0265342_10079526
344 Ga0373926_0045921
345 Ga0373923_0089421
346 Ga0373946_0010439
347 Ga0373955_0029086
348 Ga0373935_0006666
349 Ga0373947_0007812
350 Ga0373937_0039417
351 Ga0373937_0343863
352 Ga0373925_0009699
353 Ga0373925_0349671
354 Ga0395900_0239428
355 Ga0395898_0317092
356 Ga0395905_0131153
357 Ga0395901_0612694
358 Ga0450894_000308
359 Ga0450899_012633
360 Ga0450909_007410
361 Ga0451577_0000910
362 Ga0451577_0002321
363 Ga0451577_0108357
364 Ga0451577_0113954
365 Ga0451577_0191714
366 Ga0451577_0352112
367 Ga0453684_0000010
368 Ga0453684_0004273
369 Ga0453684_0022009
370 Ga0453684_0104985
371 Ga0453684_0396388
372 Ga0451576_0031722
373 Ga0451576_0164152
374 Ga0451576_0168671
375 Ga0451576_0241456
376 Ga0451576_0589338
377 Ga0495582_0018258
378 Ga0495639_0059609
379 Ga0495630_0000441
380 Ga0495630_0030346
381 Ga0495666_0000586
382 Ga0495666_0118371
383 Ga0495665_0081704
384 Ga0495640_0045524
385 Ga0495586_0001176
386 Ga0495635_0070721
387 Ga0495658_0009580
388 Ga0495658_0331033
389 Ga0495674_0009414
390 Ga0501073_0068173
391 Ga0501074_0172078
392 Ga0501077_0118989
393 Ga0501080_0210232
394 nmdc:mga0k408_346614_c1
395 nmdc:mga09592_20684_c1
396 nmdc:mga06r32_70201_c1
397 nmdc:mga08y16_34425_c1
398 Ga0500568_0068209
399 2687239486
400 2966922905

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01791

DeoC

DeoC/LacD family aldolase

38

266

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ngj-assembly1.cif.gz_B crystal structure of a putative deoxyribose-phosphate aldolase from entamoeba histolytica 0.9783 2 229
5h91-assembly1.cif.gz_B lbdera mutant-t29l/f163y 0.978 3 228
4xbs-assembly1.cif.gz_B 2-deoxyribose-5-phosphate aldolase mutant - e78k 0.9775 3 228
4xbk-assembly1.cif.gz_B 2-deoxyribose-5-phosphate aldolase from lactobacillus brevis 0.977 3 228
1ub3-assembly1.cif.gz_D crystal structure of tetrameric structure of aldolase from thermus thermophilus hb8 0.9722 7 228
ID Description Score Start End Superfamily
5h91B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.978 3 228 3.20.20.70
af_A4HSZ9_32_281_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9763 1 228 3.20.20.70
1j2wC00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.969 6 228 3.20.20.70
1mzhB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9664 7 234 3.20.20.70
5h91B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9647 3 228 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A536G5S4-F1-model_v4 Deoxyribose-phosphate aldolase (EC 4.1.2.4) 0.9932 1 206 GO:0004139
GO:0005737
GO:0009264
GO:0016052
AF-A0A535YGL5-F1-model_v4 Deoxyribose-phosphate aldolase (DERA) (EC 4.1.2.4) (2-deoxy-D-ribose 5-phosphate aldolase) (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) 0.9918 1 234 GO:0004139
GO:0005737
GO:0006018
GO:0009264
GO:0016052
AF-A0A6I3UZI3-F1-model_v4 Deoxyribose-phosphate aldolase (EC 4.1.2.4) 0.9912 6 115 GO:0004139
GO:0005737
GO:0009264
GO:0016052
AF-A0A7X2TW62-F1-model_v4 Deoxyribose-phosphate aldolase (DERA) (EC 4.1.2.4) (2-deoxy-D-ribose 5-phosphate aldolase) (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) 0.9907 1 234 GO:0004139
GO:0005737
GO:0006018
GO:0009264
GO:0016052
AF-A0A7X8HMI9-F1-model_v4 Deoxyribose-phosphate aldolase (DERA) (EC 4.1.2.4) (2-deoxy-D-ribose 5-phosphate aldolase) (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) 0.9899 2 235 GO:0004139
GO:0005737
GO:0006018
GO:0009264
GO:0016052

Map