F308776

General Info

Members Datasets Scaffolds Average Seq Length
201 161 400 839

Family's Representative Sequence

Representative Sequence 3300037471|Ga0395905_0000821|Ga0395905_0000821_37202_39952
Length 890
Sequence MWELNQRSKLSQISGVNTNAFSLDYAISFYGRKHTSSAAVIFEIATRGLGLLSYDRASVDLTNCDKEPIHVPGSIQPHGAMLVLDSSSYNVSYVSSNIGQFLGVQLSDLLGQPLEAAVGSKLTHDIRNATAVAATGQKTAVVHRVDLGETKSPADILVHEFKGRLFLEFEAAASIDDTEIALHLTQSLVRRIDKETDVDSLARSVARLVRATLGYDRVMIYRFLHNGAGRVIAEAKTAVMPSFLGHHFPAGDIPAQARRLYIDNWVRVIGDSSFVPVQLTPGLSHGEAPVDMSYAHLRSVSPIHCEYLRNMGIAASMSISIVVDGELWGLVACHHDTPRALSIPLRMSAELFGQYLSLQISAIEHRKAKLGRKLGEFSSLIACDGAAVWIGGEWTATGVVPDRKEVEPLIALIAEKAGRKIWETQNLKMLLPASTAFGERVAGVLAIPVSPAADDYLCYFRSEEAHEMSWAGEPVKNETLTPSGVRLSPRGSFETWRDDVRNQSLPWTDADLIIAEAIRNYVRDVLISHNDATEEIRVRTDSERALLNAELNHRVKNILALVKSIAVQTGANASSVDEYASSFEGRLRALSYAHDQSFAGKNGGELRSLIEAEAGMHRFNSLPNRINLSGPSIGMSERAFGVFALLLHEMMTNAAKYGSLSVPAGRLDLSWALIENGDCVIDWRESGGPAVSAPTRTGFGTTLIQRTLSHDLDGKVELDFAPDGLKAHFVLPAAHLHELSQEPAVSTEVHLIDQPLAGLMVLLVEDQALIAMDTEELLKGLGASLVLVASTVDAALDQLSQTNPDCAVLDLNLGTETSERLAIVLQERKIPYVFATGYRDSVSIPEMFTHIPVVRKPVSHDSLSLRLSQALGQTNFSRYSEAVYDGIPPV

Samples

Sample ID Description Type Environment
1 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
2 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
3 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
4 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
5 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
8 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
12 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
13 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
14 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
15 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
16 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
17 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
18 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
19 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
20 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
22 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
23 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
27 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
28 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
29 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
32 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
33 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
34 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
35 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
36 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
37 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
38 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
39 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
40 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
41 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
42 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
43 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
44 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
45 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
46 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
47 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
48 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
49 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
50 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
51 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
52 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
53 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
54 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
55 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
56 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
57 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
58 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
59 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
60 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
61 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
62 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
63 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
64 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
65 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
66 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
67 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
68 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
69 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
70 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
71 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
72 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
73 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
74 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
75 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
76 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
77 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
78 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
79 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
80 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
81 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
82 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
83 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
84 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
85 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
86 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
87 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
88 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
89 2511231024 Pseudomonas sp. GM84 Isolate Nodule
90 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
91 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
92 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
93 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
94 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
95 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
96 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
97 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
98 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
99 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
100 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
101 2643221557 Ensifer sp. Root558 Isolate Unclassified
102 2643221568 Rhizobium sp. Root564 Isolate Unclassified
103 2643221582 Rhizobium sp. Root651 Isolate Unclassified
104 2643221607 Rhizobium sp. Root73 Isolate Unclassified
105 2643221610 Ensifer sp. Root74 Isolate Unclassified
106 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
107 2643221668 Ensifer sp. Root423 Isolate Unclassified
108 2643221675 Ensifer sp. Root1298 Isolate Unclassified
109 2643221680 Ensifer sp. Root1312 Isolate Unclassified
110 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
111 2643221688 Rhizobium sp. Root482 Isolate Unclassified
112 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
113 2643221693 Rhizobium sp. Root491 Isolate Unclassified
114 2643221726 Ensifer sp. Root954 Isolate Unclassified
115 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
116 2791355253 Rhizobium rhizosphaerae RD15 Isolate Rhizosphere
117 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
118 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
119 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
120 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
121 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
122 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
123 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
124 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
125 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
126 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
127 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
128 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
129 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
130 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
131 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
132 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
133 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
134 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
135 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
136 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
137 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
138 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
139 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
140 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
141 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
142 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
143 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
144 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
145 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
146 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
147 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
148 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
149 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
150 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
151 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
152 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
153 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
154 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
155 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
156 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
157 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
158 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
159 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
160 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
161 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 62.19
Metatranscriptomes 0
Isolates 37.81

Biome Distribution

Category Percentage (%)
Aerial Root 2.49
Bulb 0
Endosphere 20.4
Nodule 11.44
Rhizoplane 3.48
Rhizosphere 28.86
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395905_0000821 3300037471 Bacteria 40750
2 Ga0055526_1000084 3300003771 Bacteria 86813
3 Ga0055524_1001083 3300003775 Bacteria 16646
4 Ga0055536_1000607 3300003781 Bacteria 24398
5 Ga0055536_1010146 3300003781 Bacteria 3781
6 Ga0055530_10000067 3300003791 Bacteria 92653
7 Ga0055531_10000545 3300003794 Bacteria 33360
8 Ga0058692_1002974 3300003856 Bacteria 5442
9 Ga0065165_1004956 3300005262 Bacteria 7831
10 Ga0070665_100011556 3300005548 Bacteria 8926
11 Ga0075364_10000974 3300006051 Bacteria 15102
12 Ga0075364_10002126 3300006051 Bacteria 11084
13 Ga0079104_1000341 3300006946 Bacteria 56218
14 Ga0099826_10002051 3300006948 Bacteria 12724
15 Ga0105251_10013836 3300009011 Bacteria 4491
16 Ga0105250_10002875 3300009092 Bacteria 8414
17 Ga0105243_10012600 3300009148 Bacteria 6389
18 Ga0157373_10006877 3300013100 Bacteria 8467
19 Ga0157371_10000017 3300013102 Bacteria 320830
20 Ga0157370_10000494 3300013104 Bacteria 49013
21 Ga0209675_1000037 3300025291 Bacteria 250958
22 Ga0209676_1000323 3300025292 Bacteria 92049
23 Ga0209025_1000213 3300025294 Bacteria 139002
24 Ga0209025_1000416 3300025294 Bacteria 85510
25 Ga0209564_1000017 3300025295 Bacteria 594063
26 Ga0209564_1000468 3300025295 Bacteria 67696
27 Ga0209050_1000104 3300025298 Bacteria 228921
28 Ga0209256_1000832 3300025299 Bacteria 39045
29 Ga0209257_1000120 3300025304 Bacteria 223025
30 Ga0209281_1000035 3300027111 Bacteria 382327
31 Ga0209371_1000022 3300027312 Bacteria 536342
32 Ga0209371_1000173 3300027312 Bacteria 96201
33 Ga0209371_1003027 3300027312 Bacteria 8677
34 Ga0209282_1005517 3300027666 Bacteria 7781
35 Ga0209813_10000552 3300027866 Bacteria 8838
36 Ga0268266_10004079 3300028379 Bacteria 14119
37 Ga0268256_1000019 3300030500 Bacteria 587949
38 Ga0495627_005361 3300046453 Bacteria 5181
39 Ga0495638_0032281 3300046460 Bacteria 3358
40 Ga0495605_0000001 3300046474 Bacteria 614538
41 Ga0495605_0000036 3300046474 Bacteria 203902
42 Ga0495605_0000080 3300046474 Bacteria 125370
43 Ga0495607_0000847 3300046501 Bacteria 28896
44 Ga0495583_0000028 3300046506 Bacteria 255787
45 Ga0495583_0002005 3300046506 Bacteria 18589
46 Ga0495606_0000027 3300046507 Bacteria 253573
47 Ga0495610_0000710 3300046512 Bacteria 31775
48 Ga0495620_0000006 3300046515 Bacteria 273098
49 Ga0495620_0000028 3300046515 Bacteria 123172
50 Ga0495620_0015414 3300046515 Bacteria 3861
51 Ga0495631_0001086 3300046518 Bacteria 16881
52 Ga0495632_0000159 3300046519 Bacteria 69880
53 Ga0495648_0000597 3300046524 Bacteria 38655
54 Ga0495654_0001114 3300046530 Bacteria 19384
55 Ga0495609_0000081 3300046538 Bacteria 116100
56 Ga0495633_0000028 3300046558 Bacteria 203214
57 Ga0495661_0000217 3300046665 Bacteria 66241
58 Ga0495588_0004670 3300046674 Bacteria 6048
59 Ga0495670_0000642 3300046691 Bacteria 16684
60 Ga0495589_0000379 3300046794 Bacteria 34046
61 Ga0495660_0001181 3300046810 Bacteria 18415
62 Ga0495683_0000060 3300047323 Bacteria 115881
63 Ga0495679_000396 3300047446 Bacteria 32865
64 Ga0495681_0002397 3300047470 Bacteria 13416
65 Ga0495686_0010208 3300047472 Bacteria 6690
66 Ga0496106_0046037 3300048909 Bacteria 3278
67 Ga0496116_0000142 3300048919 Bacteria 150342
68 Ga0496116_0002619 3300048919 Bacteria 18686
69 Ga0496116_0015853 3300048919 Bacteria 5932
70 Ga0496116_0022283 3300048919 Bacteria 4751
71 Ga0496117_0000002 3300048920 Bacteria 2483758
72 Ga0496117_0001193 3300048920 Bacteria 39104
73 Ga0496117_0009915 3300048920 Bacteria 8765
74 Ga0496118_0000087 3300048921 Bacteria 176693
75 Ga0496118_0033881 3300048921 Bacteria 4181
76 Ga0496119_0000016 3300048922 Bacteria 309806
77 Ga0496119_0013925 3300048922 Bacteria 6345
78 Ga0496119_0021420 3300048922 Bacteria 4674
79 Ga0496120_0000399 3300048923 Bacteria 70103
80 Ga0496120_0036208 3300048923 Bacteria 2940
81 Ga0496121_0000003 3300048924 Bacteria 1191431
82 Ga0496121_0000235 3300048924 Bacteria 118983
83 Ga0496121_0017030 3300048924 Bacteria 7456
84 Ga0496121_0055040 3300048924 Bacteria 3318
85 Ga0496121_0077085 3300048924 Bacteria 2656
86 Ga0496122_0000004 3300048925 Bacteria 645283
87 Ga0496122_0000266 3300048925 Bacteria 117021
88 Ga0496123_0000007 3300048926 Bacteria 645283
89 Ga0496123_0000018 3300048926 Bacteria 404553
90 Ga0496124_0000252 3300048927 Bacteria 103596
91 Ga0496124_0000638 3300048927 Bacteria 57928
92 Ga0496124_0002508 3300048927 Bacteria 23884
93 Ga0496124_0003328 3300048927 Bacteria 19797
94 Ga0496124_0062164 3300048927 Bacteria 3126
95 Ga0496124_0073042 3300048927 Bacteria 2839
96 Ga0496125_0000039 3300048928 Bacteria 318665
97 Ga0496125_0000040 3300048928 Bacteria 314478
98 Ga0496125_0000575 3300048928 Bacteria 62850
99 Ga0496125_0034778 3300048928 Bacteria 4434
100 Ga0496126_0000670 3300048929 Bacteria 63371
101 Ga0496126_0001062 3300048929 Bacteria 46308
102 Ga0495678_000020 3300049459 Bacteria 253654
103 nmdc:mga00v17_214_c1 3300050491 Bacteria 34878
104 nmdc:mga00v17_238_c1 3300050491 Bacteria 32698
105 nmdc:mga00v17_806_c1 3300050491 Bacteria 17040
106 nmdc:mga0yw44_119_c1 3300050492 Bacteria 27582
107 nmdc:mga06z11_15003_c1 3300050494 Bacteria 3448
108 nmdc:mga0sz30_523_c1 3300050516 Bacteria 14337
109 Ga0500641_0011934 3300053096 Bacteria 3163
110 Ga0500556_0000002 3300053104 Bacteria 773626
111 Ga0500618_000551 3300053125 Bacteria 23266
112 Ga0500642_0000026 3300053130 Bacteria 127731
113 Ga0500652_000571 3300053131 Bacteria 12893
114 Ga0500561_0000212 3300053137 Bacteria 10578
115 Ga0500568_0004313 3300053139 Bacteria 7632
116 Ga0500573_0001478 3300053140 Bacteria 11287
117 Ga0500586_000083 3300053145 Bacteria 16354
118 Ga0500604_0001021 3300053151 Bacteria 7824
119 Ga0500616_0000031 3300053153 Bacteria 415013
120 Ga0500622_0001081 3300053156 Bacteria 22678
121 Ga0500622_0005731 3300053156 Bacteria 7380
122 Ga0500624_001053 3300053157 Bacteria 5402
123 Ga0500633_0005800 3300053160 Bacteria 2972
124 Ga0500636_0000003 3300053177 Bacteria 240189
125 2510839299 2510461069 Bacteria 5505000
126 2511169722 2510917026 Bacteria 7046020
127 2511375702 2511231024 Bacteria 5835885
128 2537876066 2537561587 Bacteria 5425293
129 2554248287 2554235003 Bacteria 5877155
130 2559295403 2558860242 Bacteria 5568029
131 2561469056 2558860983 Bacteria 4133860
132 2585205895 2582581294 Bacteria 6626667
133 2585846865 2585427594 Bacteria 6180594
134 2599332455 2599185156 Bacteria 5403036
135 2599601716 2599185210 Bacteria 5624189
136 2601610023 2600255279 Bacteria 5605316
137 2601746798 2600255308 Bacteria 5611129
138 2603861411 2602042107 Bacteria 6226103
139 2643809601 2643221557 Bacteria 7184309
140 2643856706 2643221568 Bacteria 5187270
141 2643920287 2643221582 Bacteria 5804683
142 2644051567 2643221607 Bacteria 6314006
143 2644066682 2643221610 Bacteria 7480339
144 2644200065 2643221636 Bacteria 6583769
145 2644375944 2643221668 Bacteria 7306521
146 2644415106 2643221675 Bacteria 7473456
147 2644451516 2643221680 Bacteria 7473610
148 2644480436 2643221686 Bacteria 6310811
149 2644492846 2643221688 Bacteria 5260751
150 2644498834 2643221689 Bacteria 6042950
151 2644521902 2643221693 Bacteria 5513853
152 2644693108 2643221726 Bacteria 7455827
153 2776257902 2775506901 Bacteria 9631051
154 2793283716 2791355253 Bacteria 5171699
155 2808987862 2808606387 Bacteria 5697198
156 2819559115 2818991439 Bacteria 6907412
157 2819687670 2818991461 Bacteria 7026071
158 2819687771 2818991461 Bacteria 7026071
159 2821130764 2821123053 Bacteria 7836056
160 2838675716 2838675328 Bacteria 4909118
161 2838714598 2838714209 Bacteria 5525906
162 2838721601 2838719591 Bacteria 5523910
163 2838725358 2838724970 Bacteria 4908691
164 2841848584 2841846520 Bacteria 5345850
165 2841862182 2841859092 Bacteria 5436171
166 2842125385 2842124991 Bacteria 5346824
167 2842130611 2842130223 Bacteria 4909145
168 2842154219 2842152218 Bacteria 4908957
169 2842170842 2842170452 Bacteria 5525737
170 2842177839 2842175837 Bacteria 4908771
171 2842187707 2842187318 Bacteria 5524014
172 2842212018 2842211629 Bacteria 5523832
173 2842226363 2842224351 Bacteria 5524473
174 2842518966 2842515876 Bacteria 5436280
175 2842922724 2842922631 Bacteria 5824079
176 2857530185 2857524615 Bacteria 6615449
177 2891376804 2891373044 Bacteria 5202277
178 2899795995 2899792073 Bacteria 4926588
179 2899849165 2899845264 Bacteria 5672268
180 2919079543 2919073203 Bacteria 6531949
181 2919114634 2919114240 Bacteria 5700270
182 2926755652 2926754445 Bacteria 5964435
183 2926762772 2926760298 Bacteria 5505990
184 2929140927 2929138655 Bacteria 5810547
185 2933008864 2933006813 Bacteria 4912075
186 2933014860 2933011516 Bacteria 5439334
187 2933596536 2933594066 Bacteria 5594265
188 2978974682 2978969890 Bacteria 5400756
189 2979094738 2979089926 Bacteria 5670289
190 2979100696 2979095461 Bacteria 5669583
191 2979103969 2979100975 Bacteria 5423623
192 2984511463 2984509177 Bacteria 5274802
193 2984522176 2984518228 Bacteria 5277463
194 2984541475 2984537506 Bacteria 5277481
195 2984590060 2984587000 Bacteria 5263363
196 2984603752 2984601300 Bacteria 5455244
197 2989774732 2989771324 Bacteria 5605128
198 650740613 650716007 Bacteria 5573770
199 8003571680 8003570095 Bacteria 5747666
200 8054463038 8054460903 Bacteria 4872905
201 Ga0395905_0000821
202 Ga0055526_1000084
203 Ga0055524_1001083
204 Ga0055536_1000607
205 Ga0055536_1010146
206 Ga0055530_10000067
207 Ga0055531_10000545
208 Ga0058692_1002974
209 Ga0065165_1004956
210 Ga0070665_100011556
211 Ga0075364_10000974
212 Ga0075364_10002126
213 Ga0079104_1000341
214 Ga0099826_10002051
215 Ga0105251_10013836
216 Ga0105250_10002875
217 Ga0105243_10012600
218 Ga0157373_10006877
219 Ga0157371_10000017
220 Ga0157370_10000494
221 Ga0209675_1000037
222 Ga0209676_1000323
223 Ga0209025_1000213
224 Ga0209025_1000416
225 Ga0209564_1000017
226 Ga0209564_1000468
227 Ga0209050_1000104
228 Ga0209256_1000832
229 Ga0209257_1000120
230 Ga0209281_1000035
231 Ga0209371_1000022
232 Ga0209371_1000173
233 Ga0209371_1003027
234 Ga0209282_1005517
235 Ga0209813_10000552
236 Ga0268266_10004079
237 Ga0268256_1000019
238 Ga0495627_005361
239 Ga0495638_0032281
240 Ga0495605_0000001
241 Ga0495605_0000036
242 Ga0495605_0000080
243 Ga0495607_0000847
244 Ga0495583_0000028
245 Ga0495583_0002005
246 Ga0495606_0000027
247 Ga0495610_0000710
248 Ga0495620_0000006
249 Ga0495620_0000028
250 Ga0495620_0015414
251 Ga0495631_0001086
252 Ga0495632_0000159
253 Ga0495648_0000597
254 Ga0495654_0001114
255 Ga0495609_0000081
256 Ga0495633_0000028
257 Ga0495661_0000217
258 Ga0495588_0004670
259 Ga0495670_0000642
260 Ga0495589_0000379
261 Ga0495660_0001181
262 Ga0495683_0000060
263 Ga0495679_000396
264 Ga0495681_0002397
265 Ga0495686_0010208
266 Ga0496106_0046037
267 Ga0496116_0000142
268 Ga0496116_0002619
269 Ga0496116_0015853
270 Ga0496116_0022283
271 Ga0496117_0000002
272 Ga0496117_0001193
273 Ga0496117_0009915
274 Ga0496118_0000087
275 Ga0496118_0033881
276 Ga0496119_0000016
277 Ga0496119_0013925
278 Ga0496119_0021420
279 Ga0496120_0000399
280 Ga0496120_0036208
281 Ga0496121_0000003
282 Ga0496121_0000235
283 Ga0496121_0017030
284 Ga0496121_0055040
285 Ga0496121_0077085
286 Ga0496122_0000004
287 Ga0496122_0000266
288 Ga0496123_0000007
289 Ga0496123_0000018
290 Ga0496124_0000252
291 Ga0496124_0000638
292 Ga0496124_0002508
293 Ga0496124_0003328
294 Ga0496124_0062164
295 Ga0496124_0073042
296 Ga0496125_0000039
297 Ga0496125_0000040
298 Ga0496125_0000575
299 Ga0496125_0034778
300 Ga0496126_0000670
301 Ga0496126_0001062
302 Ga0495678_000020
303 nmdc:mga00v17_214_c1
304 nmdc:mga00v17_238_c1
305 nmdc:mga00v17_806_c1
306 nmdc:mga0yw44_119_c1
307 nmdc:mga06z11_15003_c1
308 nmdc:mga0sz30_523_c1
309 Ga0500641_0011934
310 Ga0500556_0000002
311 Ga0500618_000551
312 Ga0500642_0000026
313 Ga0500652_000571
314 Ga0500561_0000212
315 Ga0500568_0004313
316 Ga0500573_0001478
317 Ga0500586_000083
318 Ga0500604_0001021
319 Ga0500616_0000031
320 Ga0500622_0001081
321 Ga0500622_0005731
322 Ga0500624_001053
323 Ga0500633_0005800
324 Ga0500636_0000003
325 2510839299
326 2511169722
327 2511375702
328 2537876066
329 2554248287
330 2559295403
331 2561469056
332 2585205895
333 2585846865
334 2599332455
335 2599601716
336 2601610023
337 2601746798
338 2603861411
339 2643809601
340 2643856706
341 2643920287
342 2644051567
343 2644066682
344 2644200065
345 2644375944
346 2644415106
347 2644451516
348 2644480436
349 2644492846
350 2644498834
351 2644521902
352 2644693108
353 2776257902
354 2793283716
355 2808987862
356 2819559115
357 2819687670
358 2819687771
359 2821130764
360 2838675716
361 2838714598
362 2838721601
363 2838725358
364 2841848584
365 2841862182
366 2842125385
367 2842130611
368 2842154219
369 2842170842
370 2842177839
371 2842187707
372 2842212018
373 2842226363
374 2842518966
375 2842922724
376 2857530185
377 2891376804
378 2899795995
379 2899849165
380 2919079543
381 2919114634
382 2926755652
383 2926762772
384 2929140927
385 2933008864
386 2933014860
387 2933596536
388 2978974682
389 2979094738
390 2979100696
391 2979103969
392 2984511463
393 2984522176
394 2984541475
395 2984590060
396 2984603752
397 2989774732
398 650740613
399 8003571680
400 8054463038

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07536

HWE_HK

HWE histidine kinase

550

632

0.95

PF00360

PHY

Phytochrome region

354

531

0.94

PF08446

PAS_2

PAS fold

64

172

0.9

PF01590

GAF

GAF domain

197

363

0.6

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ab6-assembly2.cif.gz_B structure of chey mutant f14n, v86t 0.8943 716 827
6m8o-assembly1.cif.gz_A crystal structure of the receiver domain of lytr from staphylococcus aureus 0.8877 717 825
4lx8-assembly1.cif.gz_A crystal structure (2.2a) of mg2+ bound chey3 of vibrio cholerae 0.8842 716 826
7lsc-assembly1.cif.gz_D crystal structure of near-infrared fluorescent protein mirfp670nano3 0.8825 141 291
1ymv-assembly1.cif.gz_A signal transduction protein chey mutant with phe 14 replaced by gly, ser 15 replaced by gly, and met 17 replaced by gly 0.881 717 827
ID Description Score Start End Superfamily
4y3iA02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9605 119 294 3.30.450.40
4o01B01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9531 120 295 3.30.450.40
4y3iA02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9207 119 294 3.30.450.40
5llyA02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9168 125 289 3.30.450.40
4s21B01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9161 127 296 3.30.450.40
ID Description Score Start End GO Terms
AF-A0A1L3ZV45-F1-model_v4 Response regulatory domain-containing protein 0.9364 713 827 GO:0000160
AF-P93523-F1-model_v4 Phytochrome A-type protein 0.9302 159 296
AF-A0A2N1CSQ4-F1-model_v4 Response regulator 0.9283 716 827 GO:0000160
AF-A0A087LR28-F1-model_v4 deleted 0.9267 719 825
AF-A0A6B8LYU1-F1-model_v4 Response regulator 0.9264 716 824 GO:0000160

Map