F309085

General Info

Members Datasets Scaffolds Average Seq Length
201 139 184 306

Family's Representative Sequence

Representative Sequence 3300049823|Ga0501044_0157317|Ga0501044_0157317_1253_2233
Length 326
Sequence VCGAWTEWKSQIKLSPASLARLIVSTYDPAALECLAAIVEEGGFERAAQRLNITQSAVSQRLRSLEAQVGTVLVVRSRPVRPTSAGHLLLKHTRQLRLLRADLDRDLRELAPGRGGAREEERVSIAVNADSIATWALSALDGAVHQGVPLEIITDDQDFTHEWLREGRVLGCVTTVKQALRGCKVLPLGAMRYIAVAAPAYAREHCLQGLTAHNFRALRFVAFNRKDDLQAEFVGRAFRLKQVALDQLFVPSSEGQVRAVLAGWGVSVVPELLVRGLLEQGQLVDVLPAASVPVQLYWHCWNLESAVLDQLTAALTEAARGALGAD

Samples

Sample ID Description Type Environment
1 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
2 2547132374 Acidovorax radicis N35 Isolate Unclassified
3 2643221570 Acidovorax sp. Root568 Isolate Unclassified
4 2643221596 Acidovorax sp. Root70 Isolate Unclassified
5 2643221609 Acidovorax sp. Root217 Isolate Unclassified
6 2643221611 Acidovorax sp. Root219 Isolate Unclassified
7 2643221652 Acidovorax sp. Root402 Isolate Unclassified
8 2643221717 Acidovorax sp. Root267 Isolate Unclassified
9 2738543012 Acidovorax sp. CF301 Isolate Unclassified
10 2816332133 Acidovorax radicis 2721A Isolate Unclassified
11 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
12 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
13 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
14 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
15 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
16 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
17 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere
18 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
19 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
20 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
21 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
22 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
23 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
24 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
25 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
26 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
27 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
28 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
29 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
30 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
31 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
34 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
35 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
36 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
41 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
42 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
43 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
46 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
49 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
53 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
54 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
55 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
56 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
57 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
58 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
59 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
60 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
65 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
66 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
69 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
81 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
82 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
83 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
84 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
85 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
86 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
87 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
88 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
89 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
90 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
91 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
92 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
93 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
94 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
95 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
96 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
97 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
101 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
102 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
103 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
104 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
105 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
106 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
107 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
108 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
109 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
110 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
111 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
112 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
113 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
114 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
115 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
116 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
117 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
118 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
119 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
120 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
121 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
122 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049760 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
129 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
130 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
131 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
132 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
133 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
134 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
135 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
136 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
137 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
138 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
139 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.54
Metatranscriptomes 0
Isolates 8.46

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 33.33
Nodule 0.5
Rhizoplane 0.5
Rhizosphere 47.76
Stem 0
Stem Tuber 0
Unclassified 17.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000009 3300002704 Bacteria 224358
2 JGI25156J39149_1000009 3300002705 Bacteria 224379
3 JGI25154J39366_1000024 3300002738 Bacteria 211372
4 JGI25157J39369_1000007 3300002741 Bacteria 224377
5 JGI25159J45721_1012579 3300002987 Bacteria 2011
6 JGI25151J46595_10004940 3300003187 Bacteria 6962
7 rootH2_10115972 3300003320 Bacteria 1462
8 JGI25160J50197_1000240 3300003354 Bacteria 42558
9 JGI25161J50226_1000009 3300003374 Bacteria 224699
10 Ga0055537_1000020 3300003773 Bacteria 117325
11 Ga0055537_1006557 3300003773 Bacteria 2930
12 Ga0055524_1000047 3300003775 Bacteria 150887
13 Ga0055536_1008897 3300003781 Bacteria 4240
14 Ga0055534_1000633 3300003784 Bacteria 17962
15 Ga0055540_1000027 3300003792 Bacteria 187454
16 Ga0055531_10000574 3300003794 Bacteria 32094
17 Ga0055531_10001820 3300003794 Bacteria 15109
18 Ga0055543_1000199 3300004625 Bacteria 49097
19 Ga0065165_1007995 3300005262 Bacteria 5058
20 Ga0070658_10059188 3300005327 Bacteria 3120
21 Ga0070658_10566781 3300005327 Bacteria 983
22 Ga0070707_100063254 3300005468 Bacteria 3551
23 Ga0068853_100166478 3300005539 Bacteria 1992
24 Ga0068855_100134138 3300005563 Bacteria 2825
25 Ga0068857_100112237 3300005577 Bacteria 2451
26 Ga0075365_10026915 3300006038 Bacteria 3654
27 Ga0075365_10153601 3300006038 Bacteria 1602
28 Ga0075363_100008242 3300006048 Bacteria 4842
29 Ga0075363_100017257 3300006048 Bacteria 3577
30 Ga0075364_10031579 3300006051 Bacteria 3402
31 Ga0075364_10047398 3300006051 Bacteria 2799
32 Ga0075367_10002447 3300006178 Bacteria 8491
33 Ga0075367_10203904 3300006178 Bacteria 1236
34 Ga0075366_10001765 3300006195 Bacteria 10903
35 Ga0075366_10002146 3300006195 Bacteria 10043
36 Ga0075428_100129917 3300006844 Bacteria 2740
37 Ga0075430_100106594 3300006846 Bacteria 2338
38 Ga0105245_10051754 3300009098 Bacteria 3681
39 Ga0105242_10009137 3300009176 Bacteria 7612
40 Ga0157326_1002073 3300012513 Bacteria 2173
41 Ga0157378_10440216 3300013297 Bacteria 1292
42 Ga0157376_10004715 3300014969 Bacteria 9503
43 Ga0213872_10006038 3300021361 Bacteria 6132
44 Ga0209435_100008 3300025206 Bacteria 503644
45 Ga0209436_108088 3300025208 Bacteria 2131
46 Ga0209646_1000029 3300025246 Bacteria 386414
47 Ga0209026_1000016 3300025250 Bacteria 386457
48 Ga0209759_1000016 3300025256 Bacteria 386414
49 Ga0209129_1005553 3300025258 Bacteria 4407
50 Ga0209565_1000061 3300025263 Bacteria 185308
51 Ga0209565_1001440 3300025263 Bacteria 10510
52 Ga0209673_1000298 3300025273 Bacteria 91771
53 Ga0209673_1018551 3300025273 Bacteria 2526
54 Ga0209130_1000014 3300025284 Bacteria 412039
55 Ga0209130_1000960 3300025284 Bacteria 22727
56 Ga0209675_1000098 3300025291 Bacteria 130512
57 Ga0209675_1011646 3300025291 Bacteria 2901
58 Ga0209676_1000013 3300025292 Bacteria 816080
59 Ga0209676_1000572 3300025292 Bacteria 55433
60 Ga0209676_1002404 3300025292 Bacteria 13389
61 Ga0209025_1003807 3300025294 Bacteria 13785
62 Ga0209025_1005433 3300025294 Bacteria 10398
63 Ga0209025_1006562 3300025294 Bacteria 8971
64 Ga0209564_1000181 3300025295 Bacteria 151002
65 Ga0209564_1000247 3300025295 Bacteria 116628
66 Ga0209564_1005551 3300025295 Bacteria 7141
67 Ga0209050_1000008 3300025298 Bacteria 1144179
68 Ga0209050_1002645 3300025298 Bacteria 14679
69 Ga0209050_1004546 3300025298 Bacteria 9321
70 Ga0209256_1000039 3300025299 Bacteria 372337
71 Ga0207426_1000224 3300025302 Bacteria 130233
72 Ga0207426_1000242 3300025302 Bacteria 122839
73 Ga0209051_1000005 3300025303 Bacteria 1142353
74 Ga0209051_1000124 3300025303 Bacteria 142998
75 Ga0209257_1000015 3300025304 Bacteria 908141
76 Ga0209257_1000031 3300025304 Bacteria 688770
77 Ga0209257_1004165 3300025304 Bacteria 11485
78 Ga0207684_10110585 3300025910 Bacteria 2352
79 Ga0207686_10037240 3300025934 Bacteria 2934
80 Ga0207667_10083042 3300025949 Bacteria 3318
81 Ga0207639_10263023 3300026041 Bacteria 1510
82 Ga0207674_10090437 3300026116 Bacteria 3052
83 Ga0207698_10251399 3300026142 Bacteria 1618
84 Ga0209970_1000069 3300027614 Bacteria 14105
85 Ga0209971_1004121 3300027682 Bacteria 3444
86 Ga0307515_10003154 3300028794 Bacteria 34882
87 Ga0307515_10097377 3300028794 Bacteria 3596
88 Ga0307515_10247565 3300028794 Bacteria 1541
89 Ga0307512_10056769 3300030522 Bacteria 3070
90 Ga0265330_10000106 3300031235 Bacteria 69731
91 Ga0265332_10000008 3300031238 Bacteria 301609
92 Ga0265332_10000154 3300031238 Bacteria 55378
93 Ga0265332_10037647 3300031238 Bacteria 2097
94 Ga0265325_10000729 3300031241 Bacteria 23816
95 Ga0265340_10039321 3300031247 Bacteria 2335
96 Ga0307513_10000029 3300031456 Bacteria 191823
97 Ga0307513_10000219 3300031456 Bacteria 82663
98 Ga0307513_10013504 3300031456 Bacteria 10022
99 Ga0307513_10331160 3300031456 Bacteria 1277
100 Ga0307408_100000136 3300031548 Bacteria 81550
101 Ga0307408_100143560 3300031548 Bacteria 1876
102 Ga0307408_100199563 3300031548 Bacteria 1618
103 Ga0307514_10001315 3300031649 Bacteria 31822
104 Ga0265314_10000292 3300031711 Bacteria 71982
105 Ga0265314_10014917 3300031711 Bacteria 6189
106 Ga0307516_10126100 3300031730 Bacteria 2345
107 Ga0307405_10104182 3300031731 Bacteria 1909
108 Ga0307405_10170832 3300031731 Bacteria 1551
109 Ga0307413_10165253 3300031824 Bacteria 1560
110 Ga0307406_10000952 3300031901 Bacteria 16228
111 Ga0307406_10008956 3300031901 Bacteria 5596
112 Ga0307412_10024452 3300031911 Bacteria 3729
113 Ga0307510_10076221 3300033180 Bacteria 3300
114 Ga0395899_0003317 3300037312 Bacteria 12754
115 Ga0395899_0017104 3300037312 Bacteria 5524
116 Ga0395899_0228673 3300037312 Bacteria 1285
117 Ga0395900_0028221 3300037418 Bacteria 5749
118 Ga0395900_0061091 3300037418 Bacteria 3875
119 Ga0395898_0069708 3300037466 Bacteria 3401
120 Ga0395905_0000078 3300037471 Bacteria 161593
121 Ga0395905_0000722 3300037471 Bacteria 43605
122 Ga0395905_0005876 3300037471 Bacteria 12454
123 Ga0395905_0043196 3300037471 Bacteria 4229
124 Ga0395905_0049045 3300037471 Bacteria 3956
125 Ga0395905_0115837 3300037471 Bacteria 2518
126 Ga0395905_0131943 3300037471 Bacteria 2349
127 Ga0395905_0134189 3300037471 Bacteria 2328
128 Ga0395905_0327080 3300037471 Bacteria 1423
129 Ga0395905_0380551 3300037471 Bacteria 1305
130 Ga0395901_0081106 3300038443 Bacteria 3388
131 Ga0395901_0507433 3300038443 Bacteria 1227
132 Ga0436361_0536998 3300039447 Bacteria 23931
133 Ga0451853_3302681 3300041512 Bacteria 2113
134 Ga0439449_0006831 3300042007 Bacteria 4351
135 Ga0450890_005269 3300042127 Bacteria 1665
136 Ga0450898_001623 3300042134 Bacteria 3014
137 Ga0439446_0012086 3300042156 Bacteria 2354
138 Ga0450893_0000512 3300042532 Bacteria 5496
139 Ga0451577_0000194 3300042876 Bacteria 127614
140 Ga0451577_0022595 3300042876 Bacteria 5743
141 Ga0453683_0001428 3300044673 Bacteria 20789
142 Ga0453683_0016266 3300044673 Bacteria 4803
143 Ga0466966_0001232 3300044684 Bacteria 16429
144 Ga0453684_0000218 3300044712 Bacteria 250267
145 Ga0453684_0178440 3300044712 Bacteria 2495
146 Ga0453684_0280673 3300044712 Bacteria 1900
147 Ga0466959_0048576 3300045049 Bacteria 3118
148 Ga0451576_0000643 3300045051 Bacteria 72224
149 Ga0451576_0004007 3300045051 Bacteria 19597
150 Ga0451576_0020455 3300045051 Bacteria 7208
151 Ga0451576_0282752 3300045051 Bacteria 1735
152 Ga0495642_0028909 3300046528 Bacteria 2210
153 Ga0495633_0004173 3300046558 Bacteria 9285
154 Ga0495633_0066811 3300046558 Bacteria 1679
155 Ga0495656_0016702 3300046615 Bacteria 2788
156 Ga0495625_0133218 3300046660 Bacteria 1682
157 Ga0495588_0018333 3300046674 Bacteria 3412
158 Ga0495681_0110104 3300047470 Bacteria 1194
159 Ga0496114_0155545 3300048917 Bacteria 1985
160 Ga0496122_0083833 3300048925 Bacteria 2208
161 Ga0496125_0215002 3300048928 Bacteria 1244
162 Ga0501034_0085422 3300049571 Bacteria 3157
163 Ga0501046_0012741 3300049580 Bacteria 7153
164 Ga0501047_0059260 3300049581 Bacteria 3696
165 Ga0501080_0150499 3300049742 Bacteria 2151
166 Ga0501263_001369 3300049760 Bacteria 2279
167 Ga0501035_0062610 3300049822 Bacteria 3310
168 Ga0501044_0053167 3300049823 Bacteria 4168
169 Ga0501044_0157317 3300049823 Bacteria 2251
170 nmdc:mga03683_18694_c1 3300050489 Bacteria 2637
171 nmdc:mga03683_22055_c1 3300050489 Bacteria 2464
172 nmdc:mga00v17_6720_c1 3300050491 Bacteria 6113
173 nmdc:mga0yw44_161217_c1 3300050492 Bacteria 1468
174 nmdc:mga0yw44_290133_c1 3300050492 Bacteria 1095
175 nmdc:mga0k408_2440_c1 3300050493 Bacteria 9879
176 nmdc:mga0k408_24459_c1 3300050493 Bacteria 3413
177 nmdc:mga06z11_49956_c1 3300050494 Bacteria 2136
178 nmdc:mga07m45_174589_c1 3300050496 Bacteria 1249
179 nmdc:mga09592_564241_c1 3300050508 Bacteria 977
180 nmdc:mga0qj67_477842_c1 3300050509 Bacteria 1003
181 Ga0500593_000227 3300053117 Bacteria 23222
182 Ga0500645_000337 3300053730 Bacteria 33437
183 Ga0500645_004694 3300053730 Bacteria 5191
184 Ga0500661_000353 3300055283 Bacteria 8412

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050509 nmdc:mga0qj67_477842_c1 nmdc:mga0qj67_477842_c1_11_790 258
2 3300042007 Ga0439449_0006831 Ga0439449_0006831_3525_4325 265
3 3300042156 Ga0439446_0012086 Ga0439446_0012086_15_821 268
4 3300048928 Ga0496125_0215002 Ga0496125_0215002_376_1233 274
5 3300037471 Ga0395905_0380551 Ga0395905_0380551_454_1287 276
6 3300049571 Ga0501034_0085422 Ga0501034_0085422_209_1123 289
7 3300049580 Ga0501046_0012741 Ga0501046_0012741_4840_5754 289
8 3300049581 Ga0501047_0059260 Ga0501047_0059260_1506_2420 289
9 3300049742 Ga0501080_0150499 Ga0501080_0150499_913_1827 289
10 3300049822 Ga0501035_0062610 Ga0501035_0062610_2188_3102 289
11 3300049823 Ga0501044_0053167 Ga0501044_0053167_661_1575 289
12 iso_pu_bacteria 2821268502 2821271004 291
13 3300050492 nmdc:mga0yw44_161217_c1 nmdc:mga0yw44_161217_c1_127_1008 292
14 3300031548 Ga0307408_100000136 Ga0307408_10000013610 295
15 3300031901 Ga0307406_10000952 Ga0307406_1000095211 295
16 3300031730 Ga0307516_10126100 Ga0307516_101261003 297
17 3300005327 Ga0070658_10059188 Ga0070658_100591882 298
18 3300045051 Ga0451576_0282752 Ga0451576_0282752_445_1365 298
19 iso_pu_bacteria 2919704043 2919708181 298
20 3300003320 rootH2_10115972 rootH2_101159722 299
21 iso_pu_bacteria 2547132374 2548500825 299
22 iso_pu_bacteria 2643221570 2643864212 299
23 iso_pu_bacteria 2643221596 2643992512 299
24 iso_pu_bacteria 2643221609 2644057855 299
25 iso_pu_bacteria 2643221652 2644292090 299
26 iso_pu_bacteria 2643221717 2644646624 299
27 iso_pu_bacteria 2738543012 2739242129 299
28 iso_pu_bacteria 2842718218 2842720476 299
29 iso_pu_bacteria 2894023352 2894028024 299
30 iso_pu_bacteria 2932422444 2932422925 299
31 iso_pu_bacteria 2974320154 2974321338 299
32 iso_pu_bacteria 2990710928 2990714818 299
33 3300031456 Ga0307513_10000029 Ga0307513_1000002942 300
34 3300003794 Ga0055531_10000574 Ga0055531_1000057422 301
35 3300025273 Ga0209673_1018551 Ga0209673_10185511 301
36 3300025303 Ga0209051_1000124 Ga0209051_1000124130 301
37 3300025304 Ga0209257_1000015 Ga0209257_100001592 301
38 3300006195 Ga0075366_10001765 Ga0075366_1000176510 302
39 3300021361 Ga0213872_10006038 Ga0213872_100060383 302
40 3300027614 Ga0209970_1000069 Ga0209970_10000699 302
41 3300027682 Ga0209971_1004121 Ga0209971_10041213 302
42 3300028794 Ga0307515_10097377 Ga0307515_100973773 302
43 3300031235 Ga0265330_10000106 Ga0265330_100001068 302
44 3300031238 Ga0265332_10000008 Ga0265332_10000008272 302
45 3300031238 Ga0265332_10000154 Ga0265332_100001547 302
46 3300031241 Ga0265325_10000729 Ga0265325_1000072921 302
47 3300031247 Ga0265340_10039321 Ga0265340_100393212 302
48 3300031711 Ga0265314_10000292 Ga0265314_1000029232 302
49 3300039447 Ga0436361_0536998 Ga0436361_0536998_9552_10460 302
50 3300049823 Ga0501044_0157317 Ga0501044_0157317_1253_2233 302
51 3300050493 nmdc:mga0k408_2440_c1 nmdc:mga0k408_2440_c1_2252_3160 302
52 3300005327 Ga0070658_10566781 Ga0070658_105667811 303
53 3300005563 Ga0068855_100134138 Ga0068855_1001341384 303
54 3300005577 Ga0068857_100112237 Ga0068857_1001122373 303
55 3300006038 Ga0075365_10026915 Ga0075365_100269154 303
56 3300006038 Ga0075365_10153601 Ga0075365_101536012 303
57 3300006048 Ga0075363_100008242 Ga0075363_1000082425 303
58 3300006051 Ga0075364_10047398 Ga0075364_100473982 303
59 3300006178 Ga0075367_10002447 Ga0075367_100024473 303
60 3300006178 Ga0075367_10203904 Ga0075367_102039042 303
61 3300006195 Ga0075366_10002146 Ga0075366_100021463 303
62 3300006844 Ga0075428_100129917 Ga0075428_1001299172 303
63 3300006846 Ga0075430_100106594 Ga0075430_1001065942 303
64 3300009098 Ga0105245_10051754 Ga0105245_100517543 303
65 3300009176 Ga0105242_10009137 Ga0105242_100091377 303
66 3300013297 Ga0157378_10440216 Ga0157378_104402162 303
67 3300014969 Ga0157376_10004715 Ga0157376_1000471512 303
68 3300025934 Ga0207686_10037240 Ga0207686_100372401 303
69 3300025949 Ga0207667_10083042 Ga0207667_100830424 303
70 3300026116 Ga0207674_10090437 Ga0207674_100904372 303
71 3300026142 Ga0207698_10251399 Ga0207698_102513992 303
72 3300028794 Ga0307515_10003154 Ga0307515_1000315414 303
73 3300028794 Ga0307515_10247565 Ga0307515_102475652 303
74 3300030522 Ga0307512_10056769 Ga0307512_100567692 303
75 3300031238 Ga0265332_10037647 Ga0265332_100376473 303
76 3300031456 Ga0307513_10013504 Ga0307513_100135045 303
77 3300031548 Ga0307408_100143560 Ga0307408_1001435601 303
78 3300031548 Ga0307408_100199563 Ga0307408_1001995632 303
79 3300031649 Ga0307514_10001315 Ga0307514_1000131525 303
80 3300031711 Ga0265314_10014917 Ga0265314_100149176 303
81 3300031731 Ga0307405_10170832 Ga0307405_101708322 303
82 3300031911 Ga0307412_10024452 Ga0307412_100244523 303
83 3300033180 Ga0307510_10076221 Ga0307510_100762215 303
84 3300037312 Ga0395899_0003317 Ga0395899_0003317_11476_12390 303
85 3300037312 Ga0395899_0017104 Ga0395899_0017104_2489_3406 303
86 3300037312 Ga0395899_0228673 Ga0395899_0228673_226_1140 303
87 3300037418 Ga0395900_0028221 Ga0395900_0028221_4653_5567 303
88 3300037418 Ga0395900_0061091 Ga0395900_0061091_2938_3852 303
89 3300037466 Ga0395898_0069708 Ga0395898_0069708_481_1395 303
90 3300037471 Ga0395905_0000078 Ga0395905_0000078_107458_108369 303
91 3300037471 Ga0395905_0000722 Ga0395905_0000722_35393_36310 303
92 3300037471 Ga0395905_0005876 Ga0395905_0005876_8867_9778 303
93 3300037471 Ga0395905_0043196 Ga0395905_0043196_261_1184 303
94 3300037471 Ga0395905_0049045 Ga0395905_0049045_200_1114 303
95 3300037471 Ga0395905_0115837 Ga0395905_0115837_756_1667 303
96 3300037471 Ga0395905_0131943 Ga0395905_0131943_419_1333 303
97 3300037471 Ga0395905_0134189 Ga0395905_0134189_48_965 303
98 3300037471 Ga0395905_0327080 Ga0395905_0327080_456_1367 303
99 3300038443 Ga0395901_0081106 Ga0395901_0081106_1348_2265 303
100 3300038443 Ga0395901_0507433 Ga0395901_0507433_282_1196 303
101 3300042127 Ga0450890_005269 Ga0450890_005269_660_1574 303
102 3300042134 Ga0450898_001623 Ga0450898_001623_894_1808 303
103 3300042532 Ga0450893_0000512 Ga0450893_0000512_3227_4210 303
104 3300042876 Ga0451577_0000194 Ga0451577_0000194_5632_6558 303
105 3300042876 Ga0451577_0022595 Ga0451577_0022595_2792_3754 303
106 3300044673 Ga0453683_0001428 Ga0453683_0001428_18734_19648 303
107 3300044673 Ga0453683_0016266 Ga0453683_0016266_1661_2623 303
108 3300044684 Ga0466966_0001232 Ga0466966_0001232_5900_6811 303
109 3300044712 Ga0453684_0000218 Ga0453684_0000218_152127_153053 303
110 3300044712 Ga0453684_0178440 Ga0453684_0178440_247_1209 303
111 3300044712 Ga0453684_0280673 Ga0453684_0280673_79_993 303
112 3300045049 Ga0466959_0048576 Ga0466959_0048576_1454_2365 303
113 3300045051 Ga0451576_0000643 Ga0451576_0000643_5433_6359 303
114 3300045051 Ga0451576_0004007 Ga0451576_0004007_15174_16136 303
115 3300045051 Ga0451576_0020455 Ga0451576_0020455_5453_6367 303
116 3300046528 Ga0495642_0028909 Ga0495642_0028909_737_1651 303
117 3300046558 Ga0495633_0004173 Ga0495633_0004173_4804_5748 303
118 3300046558 Ga0495633_0066811 Ga0495633_0066811_593_1507 303
119 3300046615 Ga0495656_0016702 Ga0495656_0016702_1083_1997 303
120 3300046660 Ga0495625_0133218 Ga0495625_0133218_155_1084 303
121 3300046674 Ga0495588_0018333 Ga0495588_0018333_849_1763 303
122 3300047470 Ga0495681_0110104 Ga0495681_0110104_84_998 303
123 3300048917 Ga0496114_0155545 Ga0496114_0155545_989_1918 303
124 3300048925 Ga0496122_0083833 Ga0496122_0083833_1044_1988 303
125 3300049760 Ga0501263_001369 Ga0501263_001369_1170_2084 303
126 3300050489 nmdc:mga03683_18694_c1 nmdc:mga03683_18694_c1_1693_2607 303
127 3300050492 nmdc:mga0yw44_290133_c1 nmdc:mga0yw44_290133_c1_17_931 303
128 3300050494 nmdc:mga06z11_49956_c1 nmdc:mga06z11_49956_c1_229_1143 303
129 3300050496 nmdc:mga07m45_174589_c1 nmdc:mga07m45_174589_c1_128_1042 303
130 3300050508 nmdc:mga09592_564241_c1 nmdc:mga09592_564241_c1_15_929 303
131 iso_pu_bacteria 2643221611 2644072892 303
132 iso_pu_bacteria 2816332133 2816470254 303
133 3300005468 Ga0070707_100063254 Ga0070707_1000632541 304
134 3300025910 Ga0207684_10110585 Ga0207684_101105851 304
135 iso_pu_bacteria 2511231002 2511246611 310
136 3300005539 Ga0068853_100166478 Ga0068853_1001664782 312
137 3300012513 Ga0157326_1002073 Ga0157326_10020732 312
138 3300025292 Ga0209676_1002404 Ga0209676_10024046 312
139 3300025294 Ga0209025_1003807 Ga0209025_10038072 312
140 3300025295 Ga0209564_1000247 Ga0209564_100024768 312
141 3300025295 Ga0209564_1005551 Ga0209564_10055512 312
142 3300025298 Ga0209050_1004546 Ga0209050_10045464 312
143 3300025304 Ga0209257_1004165 Ga0209257_10041654 312
144 3300026041 Ga0207639_10263023 Ga0207639_102630231 312
145 3300031731 Ga0307405_10104182 Ga0307405_101041822 312
146 3300031901 Ga0307406_10008956 Ga0307406_100089561 312
147 3300002987 JGI25159J45721_1012579 JGI25159J45721_10125792 313
148 3300003773 Ga0055537_1000020 Ga0055537_100002056 313
149 3300003775 Ga0055524_1000047 Ga0055524_100004785 313
150 3300003781 Ga0055536_1008897 Ga0055536_10088972 313
151 3300003784 Ga0055534_1000633 Ga0055534_10006332 313
152 3300003792 Ga0055540_1000027 Ga0055540_100002759 313
153 3300003794 Ga0055531_10001820 Ga0055531_100018202 313
154 3300025263 Ga0209565_1000061 Ga0209565_1000061170 313
155 3300025273 Ga0209673_1000298 Ga0209673_100029826 313
156 3300025284 Ga0209130_1000960 Ga0209130_100096012 313
157 3300025291 Ga0209675_1000098 Ga0209675_100009817 313
158 3300025292 Ga0209676_1000013 Ga0209676_1000013634 313
159 3300025292 Ga0209676_1000572 Ga0209676_100057211 313
160 3300025294 Ga0209025_1005433 Ga0209025_10054333 313
161 3300025295 Ga0209564_1000181 Ga0209564_100018162 313
162 3300025298 Ga0209050_1000008 Ga0209050_1000008634 313
163 3300025299 Ga0209256_1000039 Ga0209256_1000039233 313
164 3300025302 Ga0207426_1000224 Ga0207426_1000224125 313
165 3300025303 Ga0209051_1000005 Ga0209051_1000005634 313
166 3300025304 Ga0209257_1000031 Ga0209257_1000031224 313
167 3300002704 JGI25155J39150_1000009 JGI25155J39150_1000009100 314
168 3300002705 JGI25156J39149_1000009 JGI25156J39149_1000009120 314
169 3300002738 JGI25154J39366_1000024 JGI25154J39366_1000024120 314
170 3300002741 JGI25157J39369_1000007 JGI25157J39369_1000007120 314
171 3300003187 JGI25151J46595_10004940 JGI25151J46595_100049402 314
172 3300003354 JGI25160J50197_1000240 JGI25160J50197_100024012 314
173 3300003374 JGI25161J50226_1000009 JGI25161J50226_1000009101 314
174 3300003773 Ga0055537_1006557 Ga0055537_10065571 314
175 3300004625 Ga0055543_1000199 Ga0055543_100019912 314
176 3300005262 Ga0065165_1007995 Ga0065165_10079952 314
177 3300006048 Ga0075363_100017257 Ga0075363_1000172572 314
178 3300006051 Ga0075364_10031579 Ga0075364_100315792 314
179 3300025206 Ga0209435_100008 Ga0209435_10000826 314
180 3300025208 Ga0209436_108088 Ga0209436_1080882 314
181 3300025246 Ga0209646_1000029 Ga0209646_1000029252 314
182 3300025250 Ga0209026_1000016 Ga0209026_1000016252 314
183 3300025256 Ga0209759_1000016 Ga0209759_1000016252 314
184 3300025258 Ga0209129_1005553 Ga0209129_10055532 314
185 3300025263 Ga0209565_1001440 Ga0209565_10014402 314
186 3300025284 Ga0209130_1000014 Ga0209130_1000014125 314
187 3300025291 Ga0209675_1011646 Ga0209675_10116462 314
188 3300025294 Ga0209025_1006562 Ga0209025_10065623 314
189 3300025298 Ga0209050_1002645 Ga0209050_10026459 314
190 3300025302 Ga0207426_1000242 Ga0207426_100024212 314
191 3300031456 Ga0307513_10000219 Ga0307513_1000021935 314
192 3300031456 Ga0307513_10331160 Ga0307513_103311602 314
193 3300031824 Ga0307413_10165253 Ga0307413_101652531 314
194 3300041512 Ga0451853_3302681 Ga0451853_3302681_395_1339 314
195 3300050489 nmdc:mga03683_22055_c1 nmdc:mga03683_22055_c1_15_959 314
196 3300050491 nmdc:mga00v17_6720_c1 nmdc:mga00v17_6720_c1_3621_4565 314
197 3300050493 nmdc:mga0k408_24459_c1 nmdc:mga0k408_24459_c1_1109_2053 314
198 3300053117 Ga0500593_000227 Ga0500593_000227_13522_14466 314
199 3300053730 Ga0500645_000337 Ga0500645_000337_17908_18852 314
200 3300053730 Ga0500645_004694 Ga0500645_004694_3149_4093 314
201 3300055283 Ga0500661_000353 Ga0500661_000353_4365_5309 314

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

29

87

0.97

PF03466

LysR_substrate

LysR substrate binding domain

116

320

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fd3-assembly1.cif.gz_A-2 structure of the c-terminal domains of a lysr family protein from agrobacterium tumefaciens str. c58. 0.9282 100 314
3fd3-assembly1.cif.gz_A-2 structure of the c-terminal domains of a lysr family protein from agrobacterium tumefaciens str. c58. 0.9112 100 314
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.9071 5 88
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.896 7 66
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.8914 3 48
ID Description Score Start End Superfamily
af_P9WMF5_6_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9808 5 77 1.10.10.10
3ispA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9728 8 84 1.10.10.10
3ispB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9517 3 72 1.10.10.10
af_P9WMF5_6_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9428 5 77 1.10.10.10
af_P67662_3_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9343 5 84 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A645CHY4-F1-model_v4 HTH-type transcriptional regulator ArgP 0.9763 172 314 GO:0003700
AF-A0A399XFC4-F1-model_v4 deleted 0.9732 5 72
AF-A0A645CHY4-F1-model_v4 HTH-type transcriptional regulator ArgP 0.9619 172 314 GO:0003700
AF-A0A3M6HSW6-F1-model_v4 Chromosome replication initiation inhibitor protein 0.9365 129 314 GO:0003700
AF-A0A356HG98-F1-model_v4 deleted 0.9319 108 313

Feature Viewer

pLDDT pTM Quality
86.87 0.73 High
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Predicted Structure (AlphaFold2)

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