F309095

General Info

Members Datasets Scaffolds Average Seq Length
201 158 190 323

Family's Representative Sequence

Representative Sequence 3300050509|nmdc:mga0qj67_22254_c1|nmdc:mga0qj67_22254_c1_1661_2851
Length 368
Sequence MTRTRGLIVVPTGNSAFVWVPVSVSALGAQATSANTVHEARIPSTYLRVVRAAMRIILPGGSGQVGGVLARAFAADGHDVVVLTRGDKGPHTVPWDAKTLGDWAKEIDGADIVVNLAGRSVNCRYTEANLREMFDSRVDSTRVVGEAIAQAARPPRLWLQMSTATIYAHRYDAANDEATGIIGGEEPDVPDYWSFSVKIARAWEQAQAEADTPRTRKVAMRASMVMSPDRGGIFDVLLGLVRRGLGGPVGGGEQYVSWIHDQDFVRAVKFLIDHDELDGAVNLASPNPLVYRDFMAALRRAWGTRIGLPATKWMLGIGAFFLRTDSELVLKSRRVVPGRLLDSGFEFQHATWPEAAIDLVERWRSKKN

Samples

Sample ID Description Type Environment
1 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
2 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
3 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
4 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
5 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
6 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
7 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
8 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
9 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
10 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
14 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
15 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
16 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
17 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
18 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
19 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
23 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
24 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
25 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
40 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
41 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
44 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
48 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
49 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
50 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
55 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
62 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
63 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
64 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
65 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
66 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
69 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
88 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
91 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
92 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
93 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
94 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
95 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
96 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
97 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
98 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
99 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
100 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
101 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
102 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
103 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
104 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
105 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
106 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
107 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
108 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
109 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
110 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
111 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
112 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
113 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
114 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
115 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
116 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
117 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
118 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
119 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
120 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
121 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
122 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
123 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
124 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
125 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
126 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
127 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
128 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
129 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
130 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
131 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
132 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
133 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
134 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
135 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
136 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
140 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
141 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
143 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
144 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
145 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
146 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
147 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
148 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
149 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
150 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
151 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
152 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
153 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
154 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
155 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
156 8002784119 Frankia sp. AgB1.9 Isolate Nodule
157 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere
158 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.53
Metatranscriptomes 0
Isolates 5.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.97
Nodule 0.5
Rhizoplane 0.5
Rhizosphere 83.08
Stem 0
Stem Tuber 0
Unclassified 8.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MBSR1b_contig_8520126 2162886012 Bacteria 1204
2 rootH1_10088989 3300003316 Bacteria 1934
3 rootL2_10023703 3300003322 Bacteria 7074
4 rootL2_10155595 3300003322 Bacteria 1578
5 rootL2_10261340 3300003322 Bacteria 2816
6 rootH1_10110701 3300003323 Bacteria 4003
7 Ga0070658_10376729 3300005327 Unclassified 1217
8 Ga0070680_100297689 3300005336 Bacteria 1368
9 Ga0070682_100170665 3300005337 Bacteria 1511
10 Ga0068868_100062954 3300005338 Bacteria 2942
11 Ga0068868_100113562 3300005338 Bacteria 2203
12 Ga0070668_100027296 3300005347 Bacteria 4334
13 Ga0070669_100000753 3300005353 Bacteria 23583
14 Ga0070675_100070375 3300005354 Bacteria 2899
15 Ga0070667_100017499 3300005367 Bacteria 5940
16 Ga0070667_100203290 3300005367 Bacteria 1758
17 Ga0070709_10000055 3300005434 Bacteria 88799
18 Ga0070709_10268070 3300005434 Unclassified 1236
19 Ga0070701_10209206 3300005438 Bacteria 1157
20 Ga0070708_100200483 3300005445 Unclassified 1868
21 Ga0070663_100072577 3300005455 Bacteria 2508
22 Ga0070681_10215272 3300005458 Bacteria 1837
23 Ga0070679_100060720 3300005530 Bacteria 3767
24 Ga0068853_100002583 3300005539 Bacteria 13608
25 Ga0070672_100065709 3300005543 Unclassified 2870
26 Ga0070672_100075110 3300005543 Bacteria 2697
27 Ga0068855_100023159 3300005563 Bacteria 7441
28 Ga0070664_100039348 3300005564 Bacteria 3984
29 Ga0070664_100118511 3300005564 Bacteria 2316
30 Ga0070664_100292282 3300005564 Unclassified 1471
31 Ga0068859_100001788 3300005617 Bacteria 21889
32 Ga0068859_100359716 3300005617 Bacteria 1550
33 Ga0068864_100103791 3300005618 Bacteria 2524
34 Ga0068861_100170576 3300005719 Bacteria 1803
35 Ga0068861_100447010 3300005719 Bacteria 1157
36 Ga0068863_100296821 3300005841 Bacteria 1567
37 Ga0068858_100018518 3300005842 Bacteria 6519
38 Ga0068860_100001378 3300005843 Bacteria 26374
39 Ga0068860_100019649 3300005843 Bacteria 6552
40 Ga0081455_10361547 3300005937 Bacteria 1020
41 Ga0070717_10067490 3300006028 Bacteria 2975
42 Ga0075368_10054945 3300006042 Bacteria 1587
43 Ga0075364_10015779 3300006051 Bacteria 4689
44 Ga0075364_10080908 3300006051 Bacteria 2147
45 Ga0070716_100296901 3300006173 Unclassified 1122
46 Ga0075367_10006110 3300006178 Bacteria 6054
47 Ga0075367_10033017 3300006178 Bacteria 2981
48 Ga0075366_10009518 3300006195 Bacteria 5425
49 Ga0075366_10144663 3300006195 Unclassified 1438
50 Ga0097621_100119541 3300006237 Bacteria 2234
51 Ga0075370_10006674 3300006353 Bacteria 5823
52 Ga0075428_100333553 3300006844 Unclassified 1629
53 Ga0075430_100003641 3300006846 Bacteria 12929
54 Ga0075430_100027270 3300006846 Bacteria 4855
55 Ga0075431_100011617 3300006847 Bacteria 8878
56 Ga0075434_100007742 3300006871 Bacteria 9947
57 Ga0075434_100050253 3300006871 Bacteria 4141
58 Ga0075429_100214423 3300006880 Bacteria 1687
59 Ga0097620_100001788 3300006931 Bacteria 21889
60 Ga0097620_100359728 3300006931 Bacteria 1550
61 Ga0105251_10052937 3300009011 Bacteria 1931
62 Ga0111539_10004761 3300009094 Bacteria 17715
63 Ga0111539_10052441 3300009094 Bacteria 4855
64 Ga0105245_10123319 3300009098 Bacteria 2423
65 Ga0105247_10000340 3300009101 Bacteria 40836
66 Ga0114129_10031198 3300009147 Bacteria 7537
67 Ga0114129_10081156 3300009147 Unclassified 4508
68 Ga0105242_10090152 3300009176 Bacteria 2579
69 Ga0105242_10248870 3300009176 Bacteria 1601
70 Ga0105248_10007068 3300009177 Bacteria 12298
71 Ga0105248_10073688 3300009177 Bacteria 3837
72 Ga0105237_10017685 3300009545 Bacteria 7390
73 Ga0105238_10002969 3300009551 Bacteria 16927
74 Ga0105249_10003124 3300009553 Bacteria 14315
75 Ga0105249_10017464 3300009553 Bacteria 6370
76 Ga0105249_10206441 3300009553 Unclassified 1925
77 Ga0105239_10005237 3300010375 Bacteria 15255
78 Ga0105246_10338936 3300011119 Bacteria 1228
79 Ga0157378_10037437 3300013297 Bacteria 4296
80 Ga0163162_10027841 3300013306 Bacteria 5590
81 Ga0163163_10017898 3300014325 Bacteria 6618
82 Ga0163163_10101792 3300014325 Bacteria 2895
83 Ga0157380_10185856 3300014326 Unclassified 1830
84 Ga0157379_10021713 3300014968 Bacteria 5685
85 Ga0207710_10000137 3300025900 Bacteria 86612
86 Ga0207699_10000002 3300025906 Bacteria 662194
87 Ga0207660_10336976 3300025917 Bacteria 1207
88 Ga0207652_10326137 3300025921 Bacteria 1386
89 Ga0207681_10025848 3300025923 Unclassified 3781
90 Ga0207681_10170166 3300025923 Bacteria 1651
91 Ga0207694_10134461 3300025924 Bacteria 1984
92 Ga0207665_10164480 3300025939 Bacteria 1598
93 Ga0207665_10353009 3300025939 Bacteria 1110
94 Ga0207691_10143344 3300025940 Bacteria 2104
95 Ga0207679_10294928 3300025945 Bacteria 1395
96 Ga0207667_10018641 3300025949 Bacteria 7778
97 Ga0207712_10020731 3300025961 Bacteria 4308
98 Ga0207668_10026468 3300025972 Bacteria 3766
99 Ga0207658_10057308 3300025986 Bacteria 2895
100 Ga0207658_10157197 3300025986 Bacteria 1859
101 Ga0207677_10008069 3300026023 Bacteria 5862
102 Ga0207639_10003943 3300026041 Bacteria 10018
103 Ga0207641_10173998 3300026088 Bacteria 1967
104 Ga0207676_10065143 3300026095 Unclassified 2901
105 Ga0207676_10433690 3300026095 Bacteria 1235
106 Ga0207698_10100872 3300026142 Bacteria 2393
107 Ga0207428_10005780 3300027907 Bacteria 11482
108 Ga0207428_10007912 3300027907 Bacteria 9661
109 Ga0207428_10042977 3300027907 Bacteria 3652
110 Ga0268265_10038028 3300028380 Bacteria 3537
111 Ga0268264_10000883 3300028381 Bacteria 31611
112 Ga0265319_1000024 3300028563 Bacteria 144981
113 Ga0265334_10077555 3300028573 Bacteria 1229
114 Ga0265318_10001283 3300028577 Bacteria 15142
115 Ga0314311_1058766 3300030733 Bacteria 4584
116 Ga0265332_10006525 3300031238 Bacteria 5290
117 Ga0265320_10002472 3300031240 Bacteria 12859
118 Ga0265320_10035058 3300031240 Bacteria 2546
119 Ga0265331_10009067 3300031250 Bacteria 5619
120 Ga0265331_10044726 3300031250 Bacteria 2140
121 Ga0265316_10127047 3300031344 Bacteria 1922
122 Ga0307509_10138511 3300031507 Bacteria 2374
123 Ga0265313_10007176 3300031595 Bacteria 7673
124 Ga0265313_10011882 3300031595 Bacteria 5377
125 Ga0307508_10173545 3300031616 Bacteria 1759
126 Ga0265314_10023080 3300031711 Bacteria 4753
127 Ga0307516_10148293 3300031730 Bacteria 2109
128 Ga0307409_100632914 3300031995 Unclassified 1061
129 Ga0307510_10103451 3300033180 Bacteria 2625
130 Ga0373938_0001653 3300034957 Bacteria 3574
131 Ga0395905_0266056 3300037471 Bacteria 1600
132 Ga0436365_1312916 3300039437 Bacteria 1892
133 Ga0439433_0016347 3300041999 Bacteria 1643
134 Ga0439450_001848 3300042008 Bacteria 3200
135 Ga0439457_000581 3300042014 Bacteria 10692
136 Ga0439462_0015225 3300042015 Bacteria 1981
137 Ga0466972_0004610 3300044658 Bacteria 6905
138 Ga0466965_0001515 3300044683 Bacteria 9421
139 Ga0466963_0051526 3300044694 Bacteria 2729
140 Ga0466968_0000197 3300044735 Bacteria 18553
141 Ga0466960_0007426 3300044901 Bacteria 4452
142 Ga0451576_0348292 3300045051 Bacteria 1551
143 Ga0466967_0029852 3300045976 Bacteria 4569
144 Ga0495582_0042404 3300046473 Bacteria 2507
145 Ga0495662_0014174 3300046476 Bacteria 3879
146 Ga0495664_0152567 3300046477 Bacteria 1401
147 Ga0495583_0124748 3300046506 Bacteria 1081
148 Ga0495663_0000672 3300046525 Bacteria 11824
149 Ga0495652_0006154 3300046529 Bacteria 11209
150 Ga0495645_0133008 3300046543 Bacteria 1741
151 Ga0495661_0026150 3300046665 Bacteria 3761
152 Ga0495623_0020798 3300046679 Bacteria 4241
153 Ga0495646_0022945 3300046680 Bacteria 3931
154 Ga0495613_0037659 3300046689 Bacteria 3585
155 Ga0495581_0091045 3300047315 Bacteria 1769
156 Ga0495687_000985 3300047443 Bacteria 28671
157 Ga0495687_007282 3300047443 Bacteria 6557
158 Ga0495686_0008515 3300047472 Bacteria 7518
159 Ga0496115_0013282 3300048918 Bacteria 6226
160 Ga0496119_0000953 3300048922 Bacteria 37230
161 Ga0496120_0000454 3300048923 Bacteria 64654
162 Ga0501037_0073668 3300049573 Bacteria 2483
163 Ga0501046_0006367 3300049580 Bacteria 10466
164 Ga0501047_0011438 3300049581 Bacteria 8400
165 Ga0501073_0023466 3300049589 Bacteria 4429
166 Ga0501080_0068155 3300049742 Bacteria 3310
167 Ga0501035_0004265 3300049822 Bacteria 13575
168 Ga0501035_0070729 3300049822 Bacteria 3090
169 Ga0501044_0002771 3300049823 Bacteria 19965
170 Ga0501044_0020632 3300049823 Bacteria 7036
171 nmdc:mga03n38_194003_c1 3300050490 Bacteria 1048
172 nmdc:mga00v17_97834_c1 3300050491 Bacteria 1850
173 nmdc:mga0yw44_119604_c1 3300050492 Bacteria 1695
174 nmdc:mga0k408_2234_c2 3300050493 Bacteria 5546
175 nmdc:mga07m45_18869_c1 3300050496 Bacteria 3730
176 nmdc:mga05p37_567400_c1 3300050507 Bacteria 1288
177 nmdc:mga05p37_60994_c1 3300050507 Bacteria 4644
178 nmdc:mga09592_143126_c1 3300050508 Bacteria 2061
179 nmdc:mga09592_83603_c1 3300050508 Bacteria 2721
180 nmdc:mga0qj67_2099_c1 3300050509 Bacteria 14196
181 nmdc:mga0qj67_22254_c1 3300050509 Bacteria 4868
182 nmdc:mga06r32_2141_c1 3300050510 Bacteria 17647
183 nmdc:mga08y16_13233_c1 3300050511 Bacteria 8676
184 nmdc:mga08y16_142189_c1 3300050511 Bacteria 2494
185 nmdc:mga08y16_44051_c1 3300050511 Bacteria 4675
186 nmdc:mga0n895_183682_c1 3300050512 Bacteria 2123
187 nmdc:mga0n895_40957_c1 3300050512 Bacteria 4501
188 nmdc:mga0n895_67122_c1 3300050512 Unclassified 3552
189 Ga0495601_0045092 3300053077 Bacteria 2771
190 Ga0500651_0000080 3300053093 Bacteria 62179

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050507 nmdc:mga05p37_567400_c1 nmdc:mga05p37_567400_c1_30_902 290
2 3300030733 Ga0314311_1058766 Ga0314311_10587662 295
3 3300005455 Ga0070663_100072577 Ga0070663_1000725772 304
4 3300028563 Ga0265319_1000024 Ga0265319_100002484 305
5 3300006871 Ga0075434_100007742 Ga0075434_1000077423 307
6 3300050512 nmdc:mga0n895_183682_c1 nmdc:mga0n895_183682_c1_164_1120 307
7 3300005337 Ga0070682_100170665 Ga0070682_1001706651 308
8 3300006173 Ga0070716_100296901 Ga0070716_1002969011 308
9 3300025939 Ga0207665_10353009 Ga0207665_103530091 308
10 iso_pu_bacteria 8057568493 8057572124 308
11 iso_pu_bacteria 2643221678 2644442211 309
12 iso_pu_bacteria 2808606359 2808847304 309
13 iso_pu_bacteria 2919468124 2919469850 309
14 iso_pu_bacteria 2946072368 2946073606 309
15 3300006042 Ga0075368_10054945 Ga0075368_100549451 310
16 3300006051 Ga0075364_10015779 Ga0075364_100157795 310
17 3300026095 Ga0207676_10433690 Ga0207676_104336902 310
18 3300005367 Ga0070667_100203290 Ga0070667_1002032902 312
19 3300006178 Ga0075367_10033017 Ga0075367_100330173 312
20 3300009094 Ga0111539_10052441 Ga0111539_100524412 312
21 3300025986 Ga0207658_10157197 Ga0207658_101571972 312
22 3300042008 Ga0439450_001848 Ga0439450_001848_607_1563 312
23 3300050490 nmdc:mga03n38_194003_c1 nmdc:mga03n38_194003_c1_25_993 312
24 3300050492 nmdc:mga0yw44_119604_c1 nmdc:mga0yw44_119604_c1_134_1102 312
25 3300050511 nmdc:mga08y16_44051_c1 nmdc:mga08y16_44051_c1_655_1593 312
26 3300005338 Ga0068868_100062954 Ga0068868_1000629543 313
27 3300005338 Ga0068868_100113562 Ga0068868_1001135622 313
28 3300005353 Ga0070669_100000753 Ga0070669_10000075322 313
29 3300005434 Ga0070709_10268070 Ga0070709_102680701 313
30 3300005438 Ga0070701_10209206 Ga0070701_102092061 313
31 3300005458 Ga0070681_10215272 Ga0070681_102152722 313
32 3300005543 Ga0070672_100065709 Ga0070672_1000657092 313
33 3300005564 Ga0070664_100292282 Ga0070664_1002922822 313
34 3300005617 Ga0068859_100359716 Ga0068859_1003597161 313
35 3300005841 Ga0068863_100296821 Ga0068863_1002968212 313
36 3300006237 Ga0097621_100119541 Ga0097621_1001195412 313
37 3300006844 Ga0075428_100333553 Ga0075428_1003335531 313
38 3300006846 Ga0075430_100027270 Ga0075430_1000272703 313
39 3300006931 Ga0097620_100359728 Ga0097620_1003597281 313
40 3300009094 Ga0111539_10004761 Ga0111539_100047619 313
41 3300009176 Ga0105242_10248870 Ga0105242_102488702 313
42 3300009553 Ga0105249_10003124 Ga0105249_100031245 313
43 3300014326 Ga0157380_10185856 Ga0157380_101858562 313
44 3300025921 Ga0207652_10326137 Ga0207652_103261371 313
45 3300025923 Ga0207681_10025848 Ga0207681_100258484 313
46 3300025945 Ga0207679_10294928 Ga0207679_102949282 313
47 3300025961 Ga0207712_10020731 Ga0207712_100207314 313
48 3300025986 Ga0207658_10057308 Ga0207658_100573081 313
49 3300026023 Ga0207677_10008069 Ga0207677_100080695 313
50 3300026088 Ga0207641_10173998 Ga0207641_101739982 313
51 3300027907 Ga0207428_10007912 Ga0207428_100079123 313
52 3300031730 Ga0307516_10148293 Ga0307516_101482933 313
53 3300034957 Ga0373938_0001653 Ga0373938_0001653_55_999 313
54 3300050491 nmdc:mga00v17_97834_c1 nmdc:mga00v17_97834_c1_505_1476 313
55 3300050511 nmdc:mga08y16_13233_c1 nmdc:mga08y16_13233_c1_7540_8481 313
56 3300009553 Ga0105249_10017464 Ga0105249_100174643 314
57 3300027907 Ga0207428_10005780 Ga0207428_100057806 314
58 3300027907 Ga0207428_10042977 Ga0207428_100429772 314
59 3300045051 Ga0451576_0348292 Ga0451576_0348292_578_1522 314
60 3300049589 Ga0501073_0023466 Ga0501073_0023466_3339_4295 314
61 3300003322 rootL2_10155595 rootL2_101555952 315
62 3300005719 Ga0068861_100170576 Ga0068861_1001705762 315
63 3300009147 Ga0114129_10081156 Ga0114129_100811565 315
64 3300009553 Ga0105249_10206441 Ga0105249_102064414 315
65 3300013306 Ga0163162_10027841 Ga0163162_100278415 315
66 3300031250 Ga0265331_10009067 Ga0265331_100090672 315
67 3300039437 Ga0436365_1312916 Ga0436365_1312916_14_1000 315
68 3300047472 Ga0495686_0008515 Ga0495686_0008515_164_1114 315
69 3300049573 Ga0501037_0073668 Ga0501037_0073668_1404_2402 315
70 3300050507 nmdc:mga05p37_60994_c1 nmdc:mga05p37_60994_c1_1588_2562 315
71 3300050512 nmdc:mga0n895_67122_c1 nmdc:mga0n895_67122_c1_32_1006 315
72 3300003323 rootH1_10110701 rootH1_101107013 316
73 3300005347 Ga0070668_100027296 Ga0070668_1000272964 316
74 3300005367 Ga0070667_100017499 Ga0070667_1000174993 316
75 3300005434 Ga0070709_10000055 Ga0070709_1000005531 316
76 3300005539 Ga0068853_100002583 Ga0068853_10000258312 316
77 3300005719 Ga0068861_100447010 Ga0068861_1004470102 316
78 3300005842 Ga0068858_100018518 Ga0068858_1000185186 316
79 3300005843 Ga0068860_100019649 Ga0068860_1000196493 316
80 3300006846 Ga0075430_100003641 Ga0075430_10000364111 316
81 3300009098 Ga0105245_10123319 Ga0105245_101233192 316
82 3300010375 Ga0105239_10005237 Ga0105239_100052375 316
83 3300025906 Ga0207699_10000002 Ga0207699_10000002179 316
84 3300025972 Ga0207668_10026468 Ga0207668_100264683 316
85 3300026041 Ga0207639_10003943 Ga0207639_100039436 316
86 3300028380 Ga0268265_10038028 Ga0268265_100380284 316
87 3300028577 Ga0265318_10001283 Ga0265318_100012834 316
88 3300031240 Ga0265320_10002472 Ga0265320_100024728 316
89 3300031711 Ga0265314_10023080 Ga0265314_100230803 316
90 3300033180 Ga0307510_10103451 Ga0307510_101034511 316
91 3300048918 Ga0496115_0013282 Ga0496115_0013282_2203_3153 316
92 3300050508 nmdc:mga09592_143126_c1 nmdc:mga09592_143126_c1_206_1156 316
93 3300050509 nmdc:mga0qj67_2099_c1 nmdc:mga0qj67_2099_c1_7058_8008 316
94 iso_pu_bacteria 2671180531 2673168911 316
95 3300005563 Ga0068855_100023159 Ga0068855_1000231595 317
96 3300005617 Ga0068859_100001788 Ga0068859_1000017889 317
97 3300006931 Ga0097620_100001788 Ga0097620_1000017889 317
98 3300009177 Ga0105248_10073688 Ga0105248_100736882 317
99 3300009551 Ga0105238_10002969 Ga0105238_100029692 317
100 3300014325 Ga0163163_10101792 Ga0163163_101017922 317
101 3300025924 Ga0207694_10134461 Ga0207694_101344612 317
102 3300025949 Ga0207667_10018641 Ga0207667_100186415 317
103 3300028573 Ga0265334_10077555 Ga0265334_100775552 317
104 3300031240 Ga0265320_10035058 Ga0265320_100350583 317
105 3300031344 Ga0265316_10127047 Ga0265316_101270472 317
106 3300031595 Ga0265313_10007176 Ga0265313_100071764 317
107 3300031595 Ga0265313_10011882 Ga0265313_100118823 317
108 3300031995 Ga0307409_100632914 Ga0307409_1006329141 317
109 3300046525 Ga0495663_0000672 Ga0495663_0000672_7363_8319 317
110 3300005354 Ga0070675_100070375 Ga0070675_1000703753 318
111 3300005543 Ga0070672_100075110 Ga0070672_1000751102 318
112 3300005564 Ga0070664_100039348 Ga0070664_1000393484 318
113 3300005564 Ga0070664_100118511 Ga0070664_1001185113 318
114 3300006028 Ga0070717_10067490 Ga0070717_100674903 318
115 3300006178 Ga0075367_10006110 Ga0075367_100061103 318
116 3300006195 Ga0075366_10009518 Ga0075366_100095185 318
117 3300006353 Ga0075370_10006674 Ga0075370_100066743 318
118 3300031238 Ga0265332_10006525 Ga0265332_100065253 318
119 3300044658 Ga0466972_0004610 Ga0466972_0004610_1824_2846 318
120 3300044683 Ga0466965_0001515 Ga0466965_0001515_5133_6155 318
121 3300044694 Ga0466963_0051526 Ga0466963_0051526_217_1173 318
122 3300044735 Ga0466968_0000197 Ga0466968_0000197_3302_4324 318
123 3300044901 Ga0466960_0007426 Ga0466960_0007426_3105_4127 318
124 3300045976 Ga0466967_0029852 Ga0466967_0029852_206_1162 318
125 3300050493 nmdc:mga0k408_2234_c2 nmdc:mga0k408_2234_c2_4409_5365 318
126 3300050496 nmdc:mga07m45_18869_c1 nmdc:mga07m45_18869_c1_893_1849 318
127 3300005843 Ga0068860_100001378 Ga0068860_1000013784 319
128 3300026142 Ga0207698_10100872 Ga0207698_101008722 319
129 3300028381 Ga0268264_10000883 Ga0268264_1000088319 319
130 3300046665 Ga0495661_0026150 Ga0495661_0026150_1081_2043 319
131 3300049580 Ga0501046_0006367 Ga0501046_0006367_3606_4589 319
132 3300049581 Ga0501047_0011438 Ga0501047_0011438_1474_2457 319
133 3300049742 Ga0501080_0068155 Ga0501080_0068155_18_980 319
134 3300049822 Ga0501035_0004265 Ga0501035_0004265_1159_2142 319
135 3300053093 Ga0500651_0000080 Ga0500651_0000080_3075_4037 319
136 3300003322 rootL2_10261340 rootL2_102613403 320
137 3300005530 Ga0070679_100060720 Ga0070679_1000607202 320
138 3300006051 Ga0075364_10080908 Ga0075364_100809083 320
139 3300009147 Ga0114129_10031198 Ga0114129_100311986 320
140 3300009545 Ga0105237_10017685 Ga0105237_100176857 320
141 3300013297 Ga0157378_10037437 Ga0157378_100374373 320
142 3300025940 Ga0207691_10143344 Ga0207691_101433443 320
143 3300031616 Ga0307508_10173545 Ga0307508_101735452 320
144 3300037471 Ga0395905_0266056 Ga0395905_0266056_174_1136 320
145 3300046473 Ga0495582_0042404 Ga0495582_0042404_1228_2190 320
146 3300046476 Ga0495662_0014174 Ga0495662_0014174_1080_2042 320
147 3300046689 Ga0495613_0037659 Ga0495613_0037659_1282_2244 320
148 3300047315 Ga0495581_0091045 Ga0495581_0091045_117_1079 320
149 3300009176 Ga0105242_10090152 Ga0105242_100901522 321
150 3300041999 Ga0439433_0016347 Ga0439433_0016347_279_1328 321
151 3300042014 Ga0439457_000581 Ga0439457_000581_694_1743 321
152 3300042015 Ga0439462_0015225 Ga0439462_0015225_555_1604 321
153 3300049823 Ga0501044_0002771 Ga0501044_0002771_12639_13604 321
154 3300050509 nmdc:mga0qj67_22254_c1 nmdc:mga0qj67_22254_c1_1661_2851 321
155 3300003316 rootH1_10088989 rootH1_100889892 322
156 3300003322 rootL2_10023703 rootL2_100237033 322
157 3300046477 Ga0495664_0152567 Ga0495664_0152567_328_1311 322
158 3300046529 Ga0495652_0006154 Ga0495652_0006154_9902_10885 322
159 3300046543 Ga0495645_0133008 Ga0495645_0133008_405_1388 322
160 3300046679 Ga0495623_0020798 Ga0495623_0020798_1910_2893 322
161 3300046680 Ga0495646_0022945 Ga0495646_0022945_2006_2989 322
162 3300053077 Ga0495601_0045092 Ga0495601_0045092_1386_2369 322
163 iso_pu_bacteria 2808606439 2809198000 322
164 3300005445 Ga0070708_100200483 Ga0070708_1002004832 323
165 3300005937 Ga0081455_10361547 Ga0081455_103615471 323
166 3300031507 Ga0307509_10138511 Ga0307509_101385113 323
167 3300047443 Ga0495687_007282 Ga0495687_007282_4146_5117 323
168 3300009011 Ga0105251_10052937 Ga0105251_100529371 324
169 3300009101 Ga0105247_10000340 Ga0105247_100003406 324
170 3300009177 Ga0105248_10007068 Ga0105248_1000706811 324
171 3300014325 Ga0163163_10017898 Ga0163163_100178986 324
172 3300014968 Ga0157379_10021713 Ga0157379_100217136 324
173 3300025900 Ga0207710_10000137 Ga0207710_1000013754 324
174 3300046506 Ga0495583_0124748 Ga0495583_0124748_21_1001 324
175 3300047443 Ga0495687_000985 Ga0495687_000985_8911_9891 324
176 3300048922 Ga0496119_0000953 Ga0496119_0000953_28284_29264 324
177 3300048923 Ga0496120_0000454 Ga0496120_0000454_35399_36379 324
178 3300005327 Ga0070658_10376729 Ga0070658_103767291 325
179 3300005336 Ga0070680_100297689 Ga0070680_1002976891 325
180 3300006195 Ga0075366_10144663 Ga0075366_101446632 325
181 3300025917 Ga0207660_10336976 Ga0207660_103369762 325
182 3300025939 Ga0207665_10164480 Ga0207665_101644802 325
183 3300031250 Ga0265331_10044726 Ga0265331_100447263 325
184 iso_pu_bacteria 8056054917 8056056423 325
185 3300006871 Ga0075434_100050253 Ga0075434_1000502534 326
186 3300050512 nmdc:mga0n895_40957_c1 nmdc:mga0n895_40957_c1_2270_3319 326
187 iso_pu_bacteria 8002784119 8002787879 326
188 iso_pu_bacteria 2773857762 2774396345 327
189 3300025923 Ga0207681_10170166 Ga0207681_101701662 329
190 3300049822 Ga0501035_0070729 Ga0501035_0070729_1909_2901 329
191 3300049823 Ga0501044_0020632 Ga0501044_0020632_3561_4553 329
192 3300050511 nmdc:mga08y16_142189_c1 nmdc:mga08y16_142189_c1_631_1650 329
193 iso_pu_bacteria 2811994878 2812353310 329
194 3300006847 Ga0075431_100011617 Ga0075431_1000116173 330
195 3300006880 Ga0075429_100214423 Ga0075429_1002144232 330
196 3300050508 nmdc:mga09592_83603_c1 nmdc:mga09592_83603_c1_1091_2083 330
197 3300050510 nmdc:mga06r32_2141_c1 nmdc:mga06r32_2141_c1_9263_10255 330
198 3300005618 Ga0068864_100103791 Ga0068864_1001037914 331
199 3300011119 Ga0105246_10338936 Ga0105246_103389361 331
200 3300026095 Ga0207676_10065143 Ga0207676_100651434 331
201 2162886012 MBSR1b_contig_8520126 MBSR1b_0810.00005540 339

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08338

DUF1731

Domain of unknown function (DUF1731)

310

359

0.81

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

56

284

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
3oh8-assembly1.cif.gz_A crystal structure of the nucleoside-diphosphate sugar epimerase from corynebacterium glutamicum. northeast structural genomics consortium target cgr91 0.8946 7 317
4b4o-assembly6.cif.gz_F crystal structure of human epimerase family protein sdr39u1 (isoform2) with nadph 0.8729 9 318
4b4o-assembly6.cif.gz_F crystal structure of human epimerase family protein sdr39u1 (isoform2) with nadph 0.8646 9 318
3m2p-assembly1.cif.gz_B the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.843 8 321
3m2p-assembly3.cif.gz_D the crystal structure of udp-n-acetylglucosamine 4-epimerase from bacillus cereus 0.841 8 326
ID Description Score Start End Superfamily
af_Q869N3_132_238_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9226 8 38 3.90.180.10
af_Q2QVJ5_13_242_3.90.180.10 Alpha Beta;Alpha-Beta Complex;Quinone Oxidoreductase; Chain A, domain 1;Medium-chain alcohol dehydrogenases, catalytic domain 0.9137 8 41 3.90.180.10
af_P76113_12_234_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8952 8 39 3.40.50.2300
af_Q2G035_4_300_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8878 12 317 3.40.50.720
af_Q8T0N5_9_300_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8852 11 317 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A2V9LB28-F1-model_v4 TIGR01777 family protein 0.9649 9 324
AF-A0A2V9LB28-F1-model_v4 TIGR01777 family protein 0.962 9 324
AF-A0A0F7G112-F1-model_v4 Nad-dependent epimerase 0.9619 9 323
AF-A0A4Q3X082-F1-model_v4 deleted 0.9566 160 321
AF-A0A2V8P399-F1-model_v4 Epimerase 0.9559 9 115

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Predicted Structure (AlphaFold2)

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