F309231

General Info

Members Datasets Scaffolds Average Seq Length
202 130 404 117

Family's Representative Sequence

Representative Sequence 3300001904|JGI24736J21556_1040578|JGI24736J21556_10405782
Length 119
Sequence MNRLFKTLQNRAQRAHRVRATVIGTAERPRLSVHISNRHIVAQIIDDSTHKTLAYVTTVGSKTVNKGTTTERAALIGAEIAKKAKAVKVSKVVFDRGNKLYHGRIAALANAAREAGLEF

Samples

Sample ID Description Type Environment
1 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
13 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
14 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
30 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
31 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
34 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300009987 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG Metagenome Rhizosphere
44 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
77 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
78 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
79 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
80 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
81 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
82 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
83 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
84 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
85 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
86 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
87 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
88 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
89 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
90 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
91 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
92 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
93 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
97 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
98 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
99 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
108 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
109 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
110 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
111 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
112 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
113 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
114 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
115 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
116 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
117 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
118 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
119 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
120 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
121 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
122 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
123 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
124 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
125 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
126 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
127 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
128 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
129 3300053722 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere Metagenome Endosphere
130 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 30.69
Nodule 0
Rhizoplane 1.98
Rhizosphere 63.86
Stem 0
Stem Tuber 0
Unclassified 10.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1040578 3300001904 Unclassified 716
2 SwRhRL2b_contig_1907635 2162886007 Bacteria 978
3 JGI25406J46586_10045823 3300003203 Unclassified 1502
4 rootH2_10000244 3300003320 Bacteria 697651
5 rootH2_10089830 3300003320 Bacteria 1284
6 rootH2_10185039 3300003320 Bacteria 2242
7 rootL2_10061056 3300003322 Bacteria 1529
8 rootH1_10092937 3300003323 Bacteria 3504
9 rootH1_10221617 3300003323 Bacteria 2448
10 Ga0065704_10110588 3300005289 Bacteria 1935
11 Ga0070658_10001050 3300005327 Bacteria 23600
12 Ga0070683_100000450 3300005329 Bacteria 28685
13 Ga0070680_100061625 3300005336 Bacteria 3071
14 Ga0070680_100177858 3300005336 Bacteria 1791
15 Ga0070680_100965796 3300005336 Bacteria 735
16 Ga0070660_100000176 3300005339 Bacteria 42222
17 Ga0070691_10208766 3300005341 Bacteria 1029
18 Ga0070661_100117467 3300005344 Bacteria 1990
19 Ga0070692_10120738 3300005345 Bacteria 1461
20 Ga0070659_100000215 3300005366 Bacteria 44375
21 Ga0070667_100004521 3300005367 Bacteria 11712
22 Ga0070700_101016245 3300005441 Bacteria 682
23 Ga0070663_100240629 3300005455 Bacteria 1428
24 Ga0070681_10345789 3300005458 Bacteria 1397
25 Ga0070681_10351113 3300005458 Unclassified 1385
26 Ga0070681_10980975 3300005458 Bacteria 764
27 Ga0070681_12037075 3300005458 Bacteria 502
28 Ga0068867_101486903 3300005459 Bacteria 630
29 Ga0070679_100005719 3300005530 Bacteria 11528
30 Ga0070679_100021502 3300005530 Bacteria 6299
31 Ga0070679_100024441 3300005530 Bacteria 5920
32 Ga0070679_100089181 3300005530 Bacteria 3071
33 Ga0070679_101960625 3300005530 Unclassified 534
34 Ga0070684_100018123 3300005535 Bacteria 5792
35 Ga0070684_100600620 3300005535 Bacteria 1023
36 Ga0068853_100001273 3300005539 Bacteria 18071
37 Ga0068853_100021204 3300005539 Bacteria 5412
38 Ga0068855_100000168 3300005563 Bacteria 83242
39 Ga0068855_100020905 3300005563 Bacteria 7848
40 Ga0068855_100425793 3300005563 Unclassified 1451
41 Ga0068855_100668043 3300005563 Bacteria 1114
42 Ga0068857_100000124 3300005577 Bacteria 46368
43 Ga0068857_100197432 3300005577 Bacteria 1833
44 Ga0068857_100198371 3300005577 Bacteria 1829
45 Ga0068857_101403460 3300005577 Bacteria 679
46 Ga0068856_100000001 3300005614 Bacteria 565602
47 Ga0068856_100048231 3300005614 Bacteria 4196
48 Ga0068856_100404681 3300005614 Unclassified 1384
49 Ga0068852_101516885 3300005616 Bacteria 692
50 Ga0081539_10001876 3300005985 Bacteria 32944
51 Ga0070717_10062928 3300006028 Bacteria 3078
52 Ga0075365_10000658 3300006038 Bacteria 13797
53 Ga0075365_10055135 3300006038 Bacteria 2638
54 Ga0075365_11135692 3300006038 Unclassified 550
55 Ga0075363_100031526 3300006048 Bacteria 2749
56 Ga0075364_10000255 3300006051 Bacteria 25673
57 Ga0075364_10005139 3300006051 Bacteria 7588
58 Ga0075364_10164933 3300006051 Bacteria 1496
59 Ga0075362_10000049 3300006177 Bacteria 39227
60 Ga0075362_10249267 3300006177 Bacteria 873
61 Ga0075369_10000057 3300006186 Bacteria 28832
62 Ga0075366_10000001 3300006195 Bacteria 569172
63 Ga0075366_10000065 3300006195 Bacteria 39633
64 Ga0075366_10580947 3300006195 Bacteria 694
65 Ga0075366_10840721 3300006195 Unclassified 571
66 Ga0075370_10004609 3300006353 Bacteria 6725
67 Ga0105240_10034510 3300009093 Bacteria 6524
68 Ga0105240_10215176 3300009093 Bacteria 2242
69 Ga0105245_10599990 3300009098 Bacteria 1127
70 Ga0105243_10010600 3300009148 Bacteria 6997
71 Ga0105241_10168928 3300009174 Bacteria 1805
72 Ga0105238_10267854 3300009551 Bacteria 1689
73 Ga0105249_10002379 3300009553 Bacteria 16319
74 Ga0105030_101248 3300009987 Bacteria 2260
75 Ga0105246_11857413 3300011119 Bacteria 577
76 Ga0157371_10000176 3300013102 Bacteria 93047
77 Ga0157370_10082369 3300013104 Bacteria 3026
78 Ga0157369_10062302 3300013105 Bacteria 4020
79 Ga0157369_10437449 3300013105 Bacteria 1355
80 Ga0157374_10001076 3300013296 Bacteria 23646
81 Ga0157372_10026889 3300013307 Bacteria 6264
82 Ga0157372_11181768 3300013307 Bacteria 884
83 Ga0163163_13083395 3300014325 Bacteria 520
84 Ga0157377_10008293 3300014745 Bacteria 5062
85 Ga0207647_10008577 3300025904 Bacteria 7315
86 Ga0207705_10010485 3300025909 Bacteria 6739
87 Ga0207707_10032071 3300025912 Bacteria 4599
88 Ga0207707_10240502 3300025912 Bacteria 1574
89 Ga0207695_10132865 3300025913 Bacteria 2445
90 Ga0207695_10481543 3300025913 Unclassified 1123
91 Ga0207660_10011813 3300025917 Bacteria 5693
92 Ga0207660_10045872 3300025917 Bacteria 3081
93 Ga0207660_10077405 3300025917 Bacteria 2435
94 Ga0207657_10000804 3300025919 Bacteria 33189
95 Ga0207652_10010927 3300025921 Bacteria 7319
96 Ga0207652_10017326 3300025921 Bacteria 5895
97 Ga0207652_10031033 3300025921 Bacteria 4484
98 Ga0207652_10054888 3300025921 Bacteria 3426
99 Ga0207652_10308518 3300025921 Bacteria 1428
100 Ga0207694_10207340 3300025924 Bacteria 1596
101 Ga0207690_10000521 3300025932 Bacteria 24993
102 Ga0207689_11508592 3300025942 Bacteria 561
103 Ga0207667_10000339 3300025949 Bacteria 64087
104 Ga0207667_10031901 3300025949 Bacteria 5682
105 Ga0207667_10069020 3300025949 Bacteria 3679
106 Ga0207667_10179746 3300025949 Unclassified 2173
107 Ga0207667_10546348 3300025949 Unclassified 1172
108 Ga0207712_10001459 3300025961 Bacteria 16136
109 Ga0207658_10002651 3300025986 Bacteria 12966
110 Ga0207639_10001800 3300026041 Bacteria 14423
111 Ga0207678_10268996 3300026067 Bacteria 1461
112 Ga0207708_11119258 3300026075 Bacteria 687
113 Ga0207702_11297797 3300026078 Bacteria 722
114 Ga0207674_10000001 3300026116 Bacteria 616581
115 Ga0207674_10005495 3300026116 Bacteria 15048
116 Ga0207674_10351938 3300026116 Bacteria 1424
117 Ga0207674_11652849 3300026116 Bacteria 609
118 Ga0207698_10612997 3300026142 Bacteria 1074
119 Ga0207698_12308214 3300026142 Unclassified 550
120 Ga0268264_11501032 3300028381 Bacteria 685
121 Ga0265338_10009458 3300028800 Bacteria 11616
122 Ga0265338_10077135 3300028800 Unclassified 2818
123 Ga0265320_10012820 3300031240 Unclassified 4855
124 Ga0265320_10167400 3300031240 Unclassified 988
125 Ga0265327_10011075 3300031251 Bacteria 6259
126 Ga0265314_10196488 3300031711 Bacteria 1196
127 Ga0307516_10107625 3300031730 Bacteria 2596
128 Ga0373951_0032409 3300035091 Bacteria 1236
129 Ga0395899_0161612 3300037312 Bacteria 1582
130 Ga0395900_0003612 3300037418 Bacteria 16623
131 Ga0395898_0022692 3300037466 Bacteria 6353
132 Ga0395905_1308991 3300037471 Bacteria 628
133 Ga0395901_0008414 3300038443 Bacteria 10428
134 Ga0451798_1108542 3300041458 Bacteria 811
135 Ga0451802_1183155 3300041460 Bacteria 665
136 Ga0451807_0614450 3300041486 Bacteria 813
137 Ga0495629_0048859 3300046459 Unclassified 2966
138 Ga0495641_0159935 3300046461 Bacteria 1007
139 Ga0495587_0137397 3300046536 Bacteria 1396
140 Ga0495609_0036902 3300046538 Bacteria 2205
141 Ga0495622_0000035 3300046557 Bacteria 122963
142 Ga0495588_0000116 3300046674 Bacteria 135919
143 Ga0495647_0025817 3300046681 Unclassified 2149
144 Ga0495658_0001981 3300046683 Bacteria 10438
145 Ga0495658_0119311 3300046683 Bacteria 1594
146 Ga0495600_0006859 3300046809 Bacteria 6945
147 Ga0495660_0008714 3300046810 Bacteria 5930
148 Ga0495604_0484912 3300047317 Bacteria 804
149 Ga0495672_0149219 3300047320 Bacteria 1214
150 Ga0495593_0079329 3300047673 Bacteria 1699
151 Ga0495602_0216082 3300048088 Bacteria 1451
152 Ga0496109_0549572 3300048912 Bacteria 1089
153 Ga0501034_0773044 3300049571 Bacteria 855
154 Ga0501047_0986175 3300049581 Bacteria 656
155 Ga0501080_0326176 3300049742 Bacteria 1389
156 nmdc:mga03683_5020_c1 3300050489 Bacteria 4433
157 nmdc:mga03683_66_c2 3300050489 Bacteria 39227
158 nmdc:mga00v17_145_c1 3300050491 Bacteria 23071
159 nmdc:mga00v17_80063_c1 3300050491 Bacteria 1565
160 nmdc:mga0yw44_199475_c1 3300050492 Bacteria 1321
161 nmdc:mga0yw44_2_c1 3300050492 Bacteria 586884
162 nmdc:mga0yw44_6972_c1 3300050492 Bacteria 5518
163 nmdc:mga0k408_14_c3 3300050493 Bacteria 36052
164 nmdc:mga0k408_1_c1 3300050493 Bacteria 1089059
165 nmdc:mga0k408_37326_c2 3300050493 Bacteria 694
166 nmdc:mga0k408_429379_c1 3300050493 Unclassified 785
167 nmdc:mga07m45_129614_c1 3300050496 Bacteria 1459
168 nmdc:mga07m45_2913_c1 3300050496 Bacteria 8113
169 nmdc:mga07m45_319071_c1 3300050496 Bacteria 903
170 nmdc:mga0sz30_8_c1 3300050516 Bacteria 107909
171 Ga0500610_0000001 3300053079 Bacteria 185468
172 Ga0500610_0024857 3300053079 Bacteria 2981
173 Ga0500643_000010 3300053087 Bacteria 408084
174 Ga0500643_000011 3300053087 Bacteria 385630
175 Ga0500643_007309 3300053087 Bacteria 4482
176 Ga0500644_0000365 3300053088 Bacteria 22175
177 Ga0500644_0000636 3300053088 Bacteria 13080
178 Ga0500644_0001805 3300053088 Bacteria 5534
179 Ga0500644_0247200 3300053088 Unclassified 751
180 Ga0500583_0000067 3300053092 Bacteria 64775
181 Ga0500583_0019470 3300053092 Unclassified 2783
182 Ga0500566_0000001 3300053094 Bacteria 1101031
183 Ga0500555_000001 3300053103 Bacteria 1353713
184 Ga0500555_000002 3300053103 Bacteria 1314346
185 Ga0500562_000001 3300053108 Bacteria 1178987
186 Ga0500562_025694 3300053108 Bacteria 1542
187 Ga0500593_000001 3300053117 Bacteria 784404
188 Ga0500594_0000139 3300053118 Bacteria 20048
189 Ga0500614_000001 3300053123 Bacteria 1274484
190 Ga0500614_019794 3300053123 Bacteria 1546
191 Ga0500628_000006 3300053129 Bacteria 154858
192 Ga0500628_001507 3300053129 Bacteria 3984
193 Ga0500642_0002538 3300053130 Bacteria 5379
194 Ga0500652_000084 3300053131 Bacteria 39562
195 Ga0500559_0016152 3300053136 Unclassified 3152
196 Ga0500568_0011040 3300053139 Bacteria 4207
197 Ga0500577_0000514 3300053142 Bacteria 9995
198 Ga0500589_000008 3300053147 Bacteria 137145
199 Ga0500604_0120929 3300053151 Bacteria 875
200 Ga0500622_0099634 3300053156 Bacteria 1432
201 Ga0500649_000014 3300053722 Bacteria 56198
202 Ga0500611_000249 3300053727 Bacteria 6060
203 JGI24736J21556_1040578
204 SwRhRL2b_contig_1907635
205 JGI25406J46586_10045823
206 rootH2_10000244
207 rootH2_10089830
208 rootH2_10185039
209 rootL2_10061056
210 rootH1_10092937
211 rootH1_10221617
212 Ga0065704_10110588
213 Ga0070658_10001050
214 Ga0070683_100000450
215 Ga0070680_100061625
216 Ga0070680_100177858
217 Ga0070680_100965796
218 Ga0070660_100000176
219 Ga0070691_10208766
220 Ga0070661_100117467
221 Ga0070692_10120738
222 Ga0070659_100000215
223 Ga0070667_100004521
224 Ga0070700_101016245
225 Ga0070663_100240629
226 Ga0070681_10345789
227 Ga0070681_10351113
228 Ga0070681_10980975
229 Ga0070681_12037075
230 Ga0068867_101486903
231 Ga0070679_100005719
232 Ga0070679_100021502
233 Ga0070679_100024441
234 Ga0070679_100089181
235 Ga0070679_101960625
236 Ga0070684_100018123
237 Ga0070684_100600620
238 Ga0068853_100001273
239 Ga0068853_100021204
240 Ga0068855_100000168
241 Ga0068855_100020905
242 Ga0068855_100425793
243 Ga0068855_100668043
244 Ga0068857_100000124
245 Ga0068857_100197432
246 Ga0068857_100198371
247 Ga0068857_101403460
248 Ga0068856_100000001
249 Ga0068856_100048231
250 Ga0068856_100404681
251 Ga0068852_101516885
252 Ga0081539_10001876
253 Ga0070717_10062928
254 Ga0075365_10000658
255 Ga0075365_10055135
256 Ga0075365_11135692
257 Ga0075363_100031526
258 Ga0075364_10000255
259 Ga0075364_10005139
260 Ga0075364_10164933
261 Ga0075362_10000049
262 Ga0075362_10249267
263 Ga0075369_10000057
264 Ga0075366_10000001
265 Ga0075366_10000065
266 Ga0075366_10580947
267 Ga0075366_10840721
268 Ga0075370_10004609
269 Ga0105240_10034510
270 Ga0105240_10215176
271 Ga0105245_10599990
272 Ga0105243_10010600
273 Ga0105241_10168928
274 Ga0105238_10267854
275 Ga0105249_10002379
276 Ga0105030_101248
277 Ga0105246_11857413
278 Ga0157371_10000176
279 Ga0157370_10082369
280 Ga0157369_10062302
281 Ga0157369_10437449
282 Ga0157374_10001076
283 Ga0157372_10026889
284 Ga0157372_11181768
285 Ga0163163_13083395
286 Ga0157377_10008293
287 Ga0207647_10008577
288 Ga0207705_10010485
289 Ga0207707_10032071
290 Ga0207707_10240502
291 Ga0207695_10132865
292 Ga0207695_10481543
293 Ga0207660_10011813
294 Ga0207660_10045872
295 Ga0207660_10077405
296 Ga0207657_10000804
297 Ga0207652_10010927
298 Ga0207652_10017326
299 Ga0207652_10031033
300 Ga0207652_10054888
301 Ga0207652_10308518
302 Ga0207694_10207340
303 Ga0207690_10000521
304 Ga0207689_11508592
305 Ga0207667_10000339
306 Ga0207667_10031901
307 Ga0207667_10069020
308 Ga0207667_10179746
309 Ga0207667_10546348
310 Ga0207712_10001459
311 Ga0207658_10002651
312 Ga0207639_10001800
313 Ga0207678_10268996
314 Ga0207708_11119258
315 Ga0207702_11297797
316 Ga0207674_10000001
317 Ga0207674_10005495
318 Ga0207674_10351938
319 Ga0207674_11652849
320 Ga0207698_10612997
321 Ga0207698_12308214
322 Ga0268264_11501032
323 Ga0265338_10009458
324 Ga0265338_10077135
325 Ga0265320_10012820
326 Ga0265320_10167400
327 Ga0265327_10011075
328 Ga0265314_10196488
329 Ga0307516_10107625
330 Ga0373951_0032409
331 Ga0395899_0161612
332 Ga0395900_0003612
333 Ga0395898_0022692
334 Ga0395905_1308991
335 Ga0395901_0008414
336 Ga0451798_1108542
337 Ga0451802_1183155
338 Ga0451807_0614450
339 Ga0495629_0048859
340 Ga0495641_0159935
341 Ga0495587_0137397
342 Ga0495609_0036902
343 Ga0495622_0000035
344 Ga0495588_0000116
345 Ga0495647_0025817
346 Ga0495658_0001981
347 Ga0495658_0119311
348 Ga0495600_0006859
349 Ga0495660_0008714
350 Ga0495604_0484912
351 Ga0495672_0149219
352 Ga0495593_0079329
353 Ga0495602_0216082
354 Ga0496109_0549572
355 Ga0501034_0773044
356 Ga0501047_0986175
357 Ga0501080_0326176
358 nmdc:mga03683_5020_c1
359 nmdc:mga03683_66_c2
360 nmdc:mga00v17_145_c1
361 nmdc:mga00v17_80063_c1
362 nmdc:mga0yw44_199475_c1
363 nmdc:mga0yw44_2_c1
364 nmdc:mga0yw44_6972_c1
365 nmdc:mga0k408_14_c3
366 nmdc:mga0k408_1_c1
367 nmdc:mga0k408_37326_c2
368 nmdc:mga0k408_429379_c1
369 nmdc:mga07m45_129614_c1
370 nmdc:mga07m45_2913_c1
371 nmdc:mga07m45_319071_c1
372 nmdc:mga0sz30_8_c1
373 Ga0500610_0000001
374 Ga0500610_0024857
375 Ga0500643_000010
376 Ga0500643_000011
377 Ga0500643_007309
378 Ga0500644_0000365
379 Ga0500644_0000636
380 Ga0500644_0001805
381 Ga0500644_0247200
382 Ga0500583_0000067
383 Ga0500583_0019470
384 Ga0500566_0000001
385 Ga0500555_000001
386 Ga0500555_000002
387 Ga0500562_000001
388 Ga0500562_025694
389 Ga0500593_000001
390 Ga0500594_0000139
391 Ga0500614_000001
392 Ga0500614_019794
393 Ga0500628_000006
394 Ga0500628_001507
395 Ga0500642_0002538
396 Ga0500652_000084
397 Ga0500559_0016152
398 Ga0500568_0011040
399 Ga0500577_0000514
400 Ga0500589_000008
401 Ga0500604_0120929
402 Ga0500622_0099634
403 Ga0500649_000014
404 Ga0500611_000249

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00861

Ribosomal_L18p

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

5

119

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
7p7q-assembly1.cif.gz_R e. faecalis 70s ribosome bound by poxta-eq2, high-resolution combined volume 0.9297 9 118
7nhl-assembly1.cif.gz_R vgaa-lc, an antibiotic resistance abcf, in complex with 70s ribosome from staphylococcus aureus 0.928 11 118
4v95-assembly1.cif.gz_BS crystal structure of yaej bound to the 70s ribosome 0.9188 14 118
4v9r-assembly2.cif.gz_DS crystal structure of antibiotic dityromycin bound to 70s ribosome 0.9151 11 118
6ddg-assembly1.cif.gz_a structure of the 50s ribosomal subunit from methicillin resistant staphylococcus aureus in complex with the oxazolidinone antibiotic lzd-6 0.9129 9 118
ID Description Score Start End Superfamily
5xymO01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9586 22 118 3.30.420.100
6ddga01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.947 30 118 3.30.420.100
5zetP01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9467 22 118 3.30.420.100
5xymO01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9376 22 118 3.30.420.100
af_Q6LFD5_83_212_3.30.420.100 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5; 0.9234 27 116 3.30.420.100
ID Description Score Start End GO Terms
AF-A0A2H0W623-F1-model_v4 Large ribosomal subunit protein uL18 (50S ribosomal protein L18) 0.9674 22 118 GO:0003735
GO:0006412
GO:0008097
GO:0022625
AF-A0A2T2QZD4-F1-model_v4 Large ribosomal subunit protein uL18 0.9672 11 118 GO:0003735
GO:0006412
GO:0008097
GO:0022625
AF-A0A554KZZ9-F1-model_v4 Large ribosomal subunit protein uL18 (50S ribosomal protein L18) 0.9665 19 118 GO:0003735
GO:0006412
GO:0008097
GO:0022625
AF-A0A0G0S4I6-F1-model_v4 Large ribosomal subunit protein uL18 0.9643 23 118 GO:0003735
GO:0006412
GO:0008097
GO:0022625
AF-A0A0G1DWL8-F1-model_v4 50S ribosomal protein L18 0.958 41 118 GO:0003735
GO:0005737
GO:0005840
GO:0006412
GO:0008097
GO:1990904

Map