F309682

General Info

Members Datasets Scaffolds Average Seq Length
202 138 404 218

Family's Representative Sequence

Representative Sequence 3300006051|Ga0075364_10231082|Ga0075364_102310822
Length 233
Sequence MSDAIRVVVADDQALVRTGFRMILTADDIDVVAEASTGNEAIDAVRRTRPDVVLMDIRMPGLDGIEATRQIVADDDLAEVKVVVVTTFELDEYVVDAIRAGAAGFLVKHTEPAELLRAVRVIAAGDALLSPSVTRTLISRFTDRTEGATGSTAGAGNGANAVDPVVLASLTEREREAVVLVAQGRSNDEIAAEWVVSPATVRTHVSRAMTKLHARDRAQLVVIAYQSGLADPA

Samples

Sample ID Description Type Environment
1 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
14 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
15 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
16 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
17 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
18 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
19 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
20 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
21 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
22 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
23 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
24 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
25 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
29 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
41 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
42 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
43 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
44 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
45 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
46 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
47 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
48 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
49 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
50 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
51 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
52 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
53 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
54 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
55 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
56 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
57 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
58 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
59 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
62 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
63 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
64 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
65 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
66 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
67 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
68 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
69 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
70 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
71 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
72 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
79 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
80 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
83 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
86 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
105 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
106 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
107 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
108 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
109 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
110 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
111 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
112 2643221549 Agromyces sp. Root1464 Isolate Unclassified
113 2643221575 Microbacterium sp. Root61 Isolate Unclassified
114 2643221597 Microbacterium sp. Root180 Isolate Unclassified
115 2643221619 Agromyces sp. Root81 Isolate Unclassified
116 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
117 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
118 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
119 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
120 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
121 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
122 2808606372 Agromyces sp. 23-23 Isolate Unclassified
123 2808606394 Promicromonospora sp. C35 Isolate Unclassified
124 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
125 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
126 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
127 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
128 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
129 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
130 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
131 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
132 2928153084 Leifsonia sp. 563 Isolate Unclassified
133 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
134 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
135 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
136 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
137 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
138 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 85.64
Metatranscriptomes 0.99
Isolates 13.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.42
Nodule 0
Rhizoplane 8.42
Rhizosphere 69.31
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075364_10231082 3300006051 Bacteria 1256
2 JGI24737J22298_10102021 3300001990 Bacteria 850
3 JGI24735J21928_10012644 3300002067 Bacteria 2667
4 JGI25406J46586_10031664 3300003203 Bacteria 1975
5 Ga0055539_1010012 3300003752 Bacteria 1175
6 Ga0070658_10000122 3300005327 Bacteria 69245
7 Ga0070658_10169207 3300005327 Bacteria 1835
8 Ga0070660_100389527 3300005339 Bacteria 1151
9 Ga0070659_100122002 3300005366 Bacteria 2112
10 Ga0070663_100155471 3300005455 Bacteria 1757
11 Ga0068855_100222308 3300005563 Bacteria 2117
12 Ga0081455_10001135 3300005937 Bacteria 33309
13 Ga0081539_10001471 3300005985 Bacteria 39947
14 Ga0075365_10000830 3300006038 Bacteria 12780
15 Ga0075363_100145291 3300006048 Bacteria 1337
16 Ga0075364_10510140 3300006051 Bacteria 822
17 Ga0075367_10014504 3300006178 Bacteria 4267
18 Ga0075370_10036124 3300006353 Bacteria 2774
19 Ga0105243_10400067 3300009148 Bacteria 1275
20 Ga0157371_10000825 3300013102 Bacteria 35495
21 Ga0157370_10011936 3300013104 Bacteria 9056
22 Ga0171462_1003 3300013250 Bacteria 853796
23 Ga0163162_10272890 3300013306 Bacteria 1823
24 Ga0157372_10186048 3300013307 Bacteria 2405
25 Ga0163163_10565313 3300014325 Bacteria 1200
26 Ga0157380_10462620 3300014326 Bacteria 1221
27 Ga0206354_11081658 3300020081 Bacteria 1537
28 Ga0206353_10850066 3300020082 Bacteria 14599
29 Ga0209563_100220 3300025230 Bacteria 28430
30 Ga0209677_100901 3300025253 Bacteria 14541
31 Ga0207656_10275013 3300025321 Bacteria 829
32 Ga0207688_10035766 3300025901 Bacteria 2751
33 Ga0207647_10025847 3300025904 Bacteria 3849
34 Ga0207647_10299900 3300025904 Bacteria 915
35 Ga0207705_10000006 3300025909 Bacteria 657147
36 Ga0207705_10372113 3300025909 Bacteria 1103
37 Ga0207657_10065854 3300025919 Bacteria 3087
38 Ga0207657_10108039 3300025919 Bacteria 2300
39 Ga0207690_10086420 3300025932 Bacteria 2204
40 Ga0207670_10342522 3300025936 Bacteria 1182
41 Ga0207667_10160933 3300025949 Bacteria 2309
42 Ga0207667_10831317 3300025949 Bacteria 919
43 Ga0207639_10409190 3300026041 Bacteria 1224
44 Ga0207702_10180906 3300026078 Bacteria 1942
45 Ga0207674_10594025 3300026116 Bacteria 1069
46 Ga0307517_10282935 3300028786 Bacteria 944
47 Ga0316177_1034687 3300030731 Bacteria 1171
48 Ga0316176_1110655 3300030732 Bacteria 2670
49 Ga0316179_1061780 3300030734 Bacteria 2074
50 Ga0307408_100397380 3300031548 Bacteria 1183
51 Ga0307408_100407533 3300031548 Bacteria 1169
52 Ga0307406_10042859 3300031901 Bacteria 2828
53 Ga0307406_10063590 3300031901 Bacteria 2391
54 Ga0307406_10554673 3300031901 Bacteria 941
55 Ga0307407_10470485 3300031903 Bacteria 916
56 Ga0307412_10564976 3300031911 Bacteria 958
57 Ga0307416_100125331 3300032002 Bacteria 2300
58 Ga0307416_101131167 3300032002 Bacteria 888
59 Ga0307416_101170348 3300032002 Bacteria 874
60 Ga0307411_10196035 3300032005 Bacteria 1547
61 Ga0307415_100401848 3300032126 Bacteria 1170
62 Ga0395899_0005974 3300037312 Bacteria 9455
63 Ga0395900_0325092 3300037418 Bacteria 1517
64 Ga0395898_0580087 3300037466 Bacteria 1064
65 Ga0395901_0441236 3300038443 Bacteria 1332
66 Ga0395901_0613734 3300038443 Bacteria 1095
67 Ga0436363_1298545 3300039450 Bacteria 2230
68 Ga0439465_0061604 3300041413 Bacteria 1244
69 Ga0439431_0023744 3300041997 Bacteria 1487
70 Ga0466972_0064754 3300044658 Bacteria 1749
71 Ga0466965_0000007 3300044683 Bacteria 131940
72 Ga0466965_0080568 3300044683 Bacteria 1645
73 Ga0466965_0081356 3300044683 Bacteria 1638
74 Ga0466965_0298520 3300044683 Bacteria 873
75 Ga0466961_0125082 3300044693 Bacteria 1613
76 Ga0466961_0193562 3300044693 Bacteria 1260
77 Ga0466970_0000103 3300044765 Bacteria 37060
78 Ga0466970_0118756 3300044765 Bacteria 1447
79 Ga0466970_0369656 3300044765 Bacteria 815
80 Ga0466957_0321879 3300044842 Bacteria 1044
81 Ga0466960_0007945 3300044901 Bacteria 4331
82 Ga0466960_0015524 3300044901 Bacteria 3284
83 Ga0466960_0084019 3300044901 Bacteria 1610
84 Ga0466959_0006502 3300045049 Bacteria 8101
85 Ga0466959_0240025 3300045049 Bacteria 1252
86 Ga0495631_0137768 3300046518 Bacteria 1048
87 Ga0495645_0041562 3300046543 Bacteria 3352
88 Ga0495656_0069996 3300046615 Bacteria 1556
89 Ga0495686_0117366 3300047472 Bacteria 1590
90 Ga0496101_0075932 3300048904 Bacteria 2474
91 Ga0496103_0085664 3300048906 Bacteria 1986
92 Ga0496105_0249104 3300048908 Bacteria 1439
93 Ga0496105_0518823 3300048908 Bacteria 933
94 Ga0496107_0052228 3300048910 Bacteria 2948
95 Ga0496109_0099132 3300048912 Bacteria 2702
96 Ga0496109_0328174 3300048912 Bacteria 1444
97 Ga0496110_0070178 3300048913 Bacteria 3104
98 Ga0496110_0144155 3300048913 Bacteria 2154
99 Ga0496111_0006270 3300048914 Bacteria 7711
100 Ga0496112_0196717 3300048915 Bacteria 1976
101 Ga0496113_0101531 3300048916 Bacteria 2230
102 Ga0496114_0021578 3300048917 Bacteria 5240
103 Ga0496114_0203097 3300048917 Bacteria 1736
104 Ga0496114_0507606 3300048917 Bacteria 1066
105 Ga0496115_0026181 3300048918 Bacteria 4550
106 Ga0496115_0082044 3300048918 Bacteria 2626
107 Ga0496117_0000620 3300048920 Bacteria 57459
108 Ga0496117_0004991 3300048920 Bacteria 14231
109 Ga0496117_0068852 3300048920 Bacteria 2387
110 Ga0496117_0372273 3300048920 Bacteria 730
111 Ga0496119_0000341 3300048922 Bacteria 65282
112 Ga0496120_0083056 3300048923 Bacteria 1730
113 Ga0496121_0000277 3300048924 Bacteria 107014
114 Ga0496122_0169522 3300048925 Bacteria 1318
115 Ga0496124_0641069 3300048927 Bacteria 684
116 Ga0496126_0003466 3300048929 Bacteria 19901
117 Ga0501031_0032995 3300049568 Bacteria 3376
118 Ga0501032_0038368 3300049569 Bacteria 3263
119 Ga0501032_0132951 3300049569 Bacteria 1640
120 Ga0501033_0040657 3300049570 Bacteria 3471
121 Ga0501033_0045006 3300049570 Bacteria 3285
122 Ga0501033_0086743 3300049570 Bacteria 2291
123 Ga0501033_0153110 3300049570 Bacteria 1662
124 Ga0501034_0026344 3300049571 Bacteria 5922
125 Ga0501034_0034998 3300049571 Bacteria 5093
126 Ga0501034_0067922 3300049571 Bacteria 3576
127 Ga0501034_0202922 3300049571 Bacteria 1940
128 Ga0501034_0255875 3300049571 Bacteria 1695
129 Ga0501034_0530961 3300049571 Bacteria 1087
130 Ga0501034_0568586 3300049571 Bacteria 1042
131 Ga0501034_0940398 3300049571 Bacteria 751
132 Ga0501037_0013898 3300049573 Bacteria 5931
133 Ga0501037_0030379 3300049573 Bacteria 3993
134 Ga0501037_0139001 3300049573 Bacteria 1739
135 Ga0501037_0227468 3300049573 Bacteria 1310
136 Ga0501037_0367497 3300049573 Bacteria 990
137 Ga0501038_0021577 3300049574 Bacteria 5779
138 Ga0501038_0021888 3300049574 Bacteria 5735
139 Ga0501038_0034116 3300049574 Bacteria 4476
140 Ga0501038_0146548 3300049574 Bacteria 1927
141 Ga0501038_0173334 3300049574 Bacteria 1745
142 Ga0501038_0263986 3300049574 Bacteria 1360
143 Ga0501039_0459811 3300049575 Bacteria 999
144 Ga0501039_0462941 3300049575 Bacteria 996
145 Ga0501042_0008267 3300049578 Bacteria 6860
146 Ga0501043_0015291 3300049579 Bacteria 6011
147 Ga0501043_0066153 3300049579 Bacteria 2838
148 Ga0501043_0114143 3300049579 Bacteria 2121
149 Ga0501046_0015278 3300049580 Bacteria 6456
150 Ga0501046_0194562 3300049580 Bacteria 1511
151 Ga0501047_0016709 3300049581 Bacteria 7010
152 Ga0501047_0018872 3300049581 Bacteria 6614
153 Ga0501047_0023647 3300049581 Bacteria 5899
154 Ga0501047_0348389 3300049581 Bacteria 1318
155 Ga0501048_0133948 3300049582 Bacteria 1751
156 Ga0501070_0002705 3300049586 Bacteria 15477
157 Ga0501070_0232598 3300049586 Bacteria 1510
158 Ga0501070_0246677 3300049586 Bacteria 1461
159 Ga0501073_0198048 3300049589 Bacteria 1389
160 Ga0501080_0090306 3300049742 Bacteria 2846
161 Ga0501035_0000926 3300049822 Bacteria 31067
162 Ga0501035_0069983 3300049822 Bacteria 3109
163 Ga0501035_0406664 3300049822 Bacteria 1132
164 Ga0501044_0015603 3300049823 Bacteria 8183
165 Ga0501044_0026604 3300049823 Bacteria 6123
166 Ga0501044_0085680 3300049823 Bacteria 3183
167 Ga0501045_0159947 3300049824 Bacteria 1676
168 nmdc:mga03n38_110964_c1 3300050490 Bacteria 1335
169 nmdc:mga00v17_374308_c1 3300050491 Bacteria 926
170 nmdc:mga0yw44_157658_c1 3300050492 Bacteria 1484
171 nmdc:mga0yw44_187091_c1 3300050492 Bacteria 1365
172 nmdc:mga06z11_60195_c1 3300050494 Bacteria 1976
173 nmdc:mga04h51_66015_c1 3300050495 Bacteria 1252
174 nmdc:mga07m45_437099_c1 3300050496 Bacteria 759
175 Ga0500616_0000968 3300053153 Bacteria 31105
176 2643769482 2643221549 Bacteria 4042819
177 2643885124 2643221575 Bacteria 4022601
178 2643995624 2643221597 Bacteria 3347721
179 2644114100 2643221619 Bacteria 4158469
180 2723642762 2721755702 Bacteria 4373124
181 2738694482 2738541272 Bacteria 6848551
182 2739323960 2738543027 Bacteria 6409078
183 2739606871 2739367654 Bacteria 6049412
184 2760305242 2758568522 Bacteria 5953541
185 2760620945 2758568621 Bacteria 5967089
186 2808902755 2808606372 Bacteria 4649509
187 2809025737 2808606394 Bacteria 6248540
188 2812322850 2811994872 Bacteria 4121241
189 2833710675 2833709550 Bacteria 4008291
190 2844842378 2844841374 Bacteria 3917147
191 2844856159 2844852863 Bacteria 3849151
192 2857732362 2857729791 Bacteria 4040535
193 2862996739 2862993130 Bacteria 3860849
194 2919058026 2919055335 Bacteria 3875751
195 2919443331 2919443155 Bacteria 4072969
196 2928155960 2928153084 Bacteria 4020257
197 2935413066 2935409751 Bacteria 4179611
198 2939663520 2939660829 Bacteria 3784848
199 2946042711 2946041624 Bacteria 4191385
200 2995468095 2995463766 Bacteria 8577691
201 8045830902 8045830549 Bacteria 4444727
202 8056580171 8056579771 Bacteria 5840325
203 Ga0075364_10231082
204 JGI24737J22298_10102021
205 JGI24735J21928_10012644
206 JGI25406J46586_10031664
207 Ga0055539_1010012
208 Ga0070658_10000122
209 Ga0070658_10169207
210 Ga0070660_100389527
211 Ga0070659_100122002
212 Ga0070663_100155471
213 Ga0068855_100222308
214 Ga0081455_10001135
215 Ga0081539_10001471
216 Ga0075365_10000830
217 Ga0075363_100145291
218 Ga0075364_10510140
219 Ga0075367_10014504
220 Ga0075370_10036124
221 Ga0105243_10400067
222 Ga0157371_10000825
223 Ga0157370_10011936
224 Ga0171462_1003
225 Ga0163162_10272890
226 Ga0157372_10186048
227 Ga0163163_10565313
228 Ga0157380_10462620
229 Ga0206354_11081658
230 Ga0206353_10850066
231 Ga0209563_100220
232 Ga0209677_100901
233 Ga0207656_10275013
234 Ga0207688_10035766
235 Ga0207647_10025847
236 Ga0207647_10299900
237 Ga0207705_10000006
238 Ga0207705_10372113
239 Ga0207657_10065854
240 Ga0207657_10108039
241 Ga0207690_10086420
242 Ga0207670_10342522
243 Ga0207667_10160933
244 Ga0207667_10831317
245 Ga0207639_10409190
246 Ga0207702_10180906
247 Ga0207674_10594025
248 Ga0307517_10282935
249 Ga0316177_1034687
250 Ga0316176_1110655
251 Ga0316179_1061780
252 Ga0307408_100397380
253 Ga0307408_100407533
254 Ga0307406_10042859
255 Ga0307406_10063590
256 Ga0307406_10554673
257 Ga0307407_10470485
258 Ga0307412_10564976
259 Ga0307416_100125331
260 Ga0307416_101131167
261 Ga0307416_101170348
262 Ga0307411_10196035
263 Ga0307415_100401848
264 Ga0395899_0005974
265 Ga0395900_0325092
266 Ga0395898_0580087
267 Ga0395901_0441236
268 Ga0395901_0613734
269 Ga0436363_1298545
270 Ga0439465_0061604
271 Ga0439431_0023744
272 Ga0466972_0064754
273 Ga0466965_0000007
274 Ga0466965_0080568
275 Ga0466965_0081356
276 Ga0466965_0298520
277 Ga0466961_0125082
278 Ga0466961_0193562
279 Ga0466970_0000103
280 Ga0466970_0118756
281 Ga0466970_0369656
282 Ga0466957_0321879
283 Ga0466960_0007945
284 Ga0466960_0015524
285 Ga0466960_0084019
286 Ga0466959_0006502
287 Ga0466959_0240025
288 Ga0495631_0137768
289 Ga0495645_0041562
290 Ga0495656_0069996
291 Ga0495686_0117366
292 Ga0496101_0075932
293 Ga0496103_0085664
294 Ga0496105_0249104
295 Ga0496105_0518823
296 Ga0496107_0052228
297 Ga0496109_0099132
298 Ga0496109_0328174
299 Ga0496110_0070178
300 Ga0496110_0144155
301 Ga0496111_0006270
302 Ga0496112_0196717
303 Ga0496113_0101531
304 Ga0496114_0021578
305 Ga0496114_0203097
306 Ga0496114_0507606
307 Ga0496115_0026181
308 Ga0496115_0082044
309 Ga0496117_0000620
310 Ga0496117_0004991
311 Ga0496117_0068852
312 Ga0496117_0372273
313 Ga0496119_0000341
314 Ga0496120_0083056
315 Ga0496121_0000277
316 Ga0496122_0169522
317 Ga0496124_0641069
318 Ga0496126_0003466
319 Ga0501031_0032995
320 Ga0501032_0038368
321 Ga0501032_0132951
322 Ga0501033_0040657
323 Ga0501033_0045006
324 Ga0501033_0086743
325 Ga0501033_0153110
326 Ga0501034_0026344
327 Ga0501034_0034998
328 Ga0501034_0067922
329 Ga0501034_0202922
330 Ga0501034_0255875
331 Ga0501034_0530961
332 Ga0501034_0568586
333 Ga0501034_0940398
334 Ga0501037_0013898
335 Ga0501037_0030379
336 Ga0501037_0139001
337 Ga0501037_0227468
338 Ga0501037_0367497
339 Ga0501038_0021577
340 Ga0501038_0021888
341 Ga0501038_0034116
342 Ga0501038_0146548
343 Ga0501038_0173334
344 Ga0501038_0263986
345 Ga0501039_0459811
346 Ga0501039_0462941
347 Ga0501042_0008267
348 Ga0501043_0015291
349 Ga0501043_0066153
350 Ga0501043_0114143
351 Ga0501046_0015278
352 Ga0501046_0194562
353 Ga0501047_0016709
354 Ga0501047_0018872
355 Ga0501047_0023647
356 Ga0501047_0348389
357 Ga0501048_0133948
358 Ga0501070_0002705
359 Ga0501070_0232598
360 Ga0501070_0246677
361 Ga0501073_0198048
362 Ga0501080_0090306
363 Ga0501035_0000926
364 Ga0501035_0069983
365 Ga0501035_0406664
366 Ga0501044_0015603
367 Ga0501044_0026604
368 Ga0501044_0085680
369 Ga0501045_0159947
370 nmdc:mga03n38_110964_c1
371 nmdc:mga00v17_374308_c1
372 nmdc:mga0yw44_157658_c1
373 nmdc:mga0yw44_187091_c1
374 nmdc:mga06z11_60195_c1
375 nmdc:mga04h51_66015_c1
376 nmdc:mga07m45_437099_c1
377 Ga0500616_0000968
378 2643769482
379 2643885124
380 2643995624
381 2644114100
382 2723642762
383 2738694482
384 2739323960
385 2739606871
386 2760305242
387 2760620945
388 2808902755
389 2809025737
390 2812322850
391 2833710675
392 2844842378
393 2844856159
394 2857732362
395 2862996739
396 2919058026
397 2919443331
398 2928155960
399 2935413066
400 2939663520
401 2946042711
402 2995468095
403 8045830902
404 8056580171

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

168

224

0.98

PF08281

Sigma70_r4_2

Sigma-70, region 4

165

212

0.97

PF00072

Response_reg

Response regulator receiver domain

7

120

0.97

PF04545

Sigma70_r4

Sigma-70, region 4

166

214

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9914 153 215
4wul-assembly1.cif.gz_B crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9904 155 215
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9871 151 215
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9813 151 215
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.9806 151 214
ID Description Score Start End Superfamily
4if4C02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9709 151 216 1.10.10.10
4if4D02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9665 151 216 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9651 155 209 1.10.10.10
4if4B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9649 151 216 1.10.10.10
3eulC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9566 1 121 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A850D035-F1-model_v4 deleted 0.9816 1 120
AF-A0A7J9ZUF4-F1-model_v4 Response regulator 0.9799 2 122 GO:0000160
GO:0003677
AF-A0A6J7IGP3-F1-model_v4 Unannotated protein 0.9682 2 120 GO:0000160
AF-A0A850D035-F1-model_v4 deleted 0.9657 1 120
AF-A0A4R4P3K2-F1-model_v4 Response regulator transcription factor 0.9633 1 219 GO:0000160
GO:0003677
GO:0006355

Map