F310580

General Info

Members Datasets Scaffolds Average Seq Length
202 132 404 444

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2939660829|2939664383
Length 448
Sequence TSTFKCTECGWQTLKWAGRCGECQQWGTVLDVSVETGIVQRVTAASLSADRSARPITEITEADVAHWPTGIDEFDRVLGGGIVPGAAILLSGEPGVGKSTLLLEVAAKAAKAKSRVLYVSAEESVNQVKLRARRTGALSENLFLAAETDLGVVLGQIDAVKPQLLIVDSVQTVSSPLSDGIAGQPSQVREVAQTLIRVAKERGLPVLLVGHVTKDGSIAGPRLLEHLVDVVCQFEGDRHTSLRFVRALKNRFGPTDEVGCFEMTGDGIAEVPDPSSLFLSRGAAVSGTCVTVSMEGKRAIPVEIQALVLDTPMPNPRRVTNGVDSSRVAMLLAVLSQRAGIKLHDKDVYVSTVGGVKLTEPGADLAIAIAIASAASDYPVPHDFAAFGEISLAGEVRPVAAAKQRTSEARRLGYRTIVDATVGSIREALASAKSAAGSAFDQELDRAF

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
8 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
9 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
10 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
11 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
12 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
18 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
21 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
22 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
23 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
29 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
30 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
33 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
37 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
38 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
39 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
40 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
41 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
42 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
43 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
44 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
45 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
46 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
47 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
48 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
49 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
50 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
51 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
52 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
53 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
54 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
55 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
56 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
57 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
58 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
59 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
60 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
61 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
79 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
80 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
81 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
82 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
84 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
85 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
86 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
87 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
88 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
89 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
90 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
91 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
92 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
93 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
94 2643221549 Agromyces sp. Root1464 Isolate Unclassified
95 2643221572 Leifsonia sp. Root60 Isolate Unclassified
96 2643221616 Leifsonia sp. Root227 Isolate Unclassified
97 2643221619 Agromyces sp. Root81 Isolate Unclassified
98 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
99 2643221649 Leifsonia sp. Root4 Isolate Unclassified
100 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
101 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
102 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
103 2808606372 Agromyces sp. 23-23 Isolate Unclassified
104 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
105 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
106 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
107 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
108 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
109 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
110 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
111 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
112 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
113 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
114 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
115 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
116 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
117 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
118 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
119 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
120 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
121 2928153084 Leifsonia sp. 563 Isolate Unclassified
122 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
123 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
124 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
125 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
126 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
127 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
128 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
129 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
130 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
131 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
132 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.22
Metatranscriptomes 1.49
Isolates 20.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.82
Nodule 0
Rhizoplane 2.48
Rhizosphere 61.88
Stem 0
Stem Tuber 0.5
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10030350 3300001979 Bacteria 1761
2 JGI24737J22298_10026427 3300001990 Bacteria 1833
3 JGI24735J21928_10000960 3300002067 Bacteria 10310
4 JGI25164J39214_1000186 3300002772 Bacteria 54746
5 JGI25165J46597_1000055 3300003214 Bacteria 224187
6 Ga0006562J51391_1011800 3300003578 Bacteria 10600
7 Ga0006562J51391_1011802 3300003578 Bacteria 9500
8 Ga0055539_1000019 3300003752 Bacteria 341727
9 Ga0055533_1000023 3300003756 Bacteria 341727
10 Ga0055525_1000125 3300003759 Bacteria 115822
11 Ga0055527_1000032 3300003760 Bacteria 153292
12 Ga0055542_1000164 3300003762 Bacteria 83529
13 Ga0055529_1000499 3300003763 Bacteria 35503
14 Ga0065714_10066675 3300005288 Bacteria 6485
15 Ga0070658_10016903 3300005327 Bacteria 5839
16 Ga0070668_100070977 3300005347 Bacteria 2712
17 Ga0070714_100100040 3300005435 Bacteria 2553
18 Ga0105249_10229105 3300009553 Bacteria 1832
19 Ga0157370_10141152 3300013104 Bacteria 2244
20 Ga0157369_10000379 3300013105 Bacteria 58791
21 Ga0157369_10053467 3300013105 Bacteria 4365
22 Ga0157369_10125804 3300013105 Bacteria 2718
23 Ga0157372_10084012 3300013307 Bacteria 3607
24 Ga0157380_10014705 3300014326 Bacteria 5731
25 Ga0206353_11038664 3300020082 Bacteria 7701
26 Ga0209566_100031 3300025225 Bacteria 341555
27 Ga0209674_100001 3300025226 Bacteria 4013750
28 Ga0209672_100006 3300025228 Bacteria 1004497
29 Ga0209147_101031 3300025229 Bacteria 11866
30 Ga0209563_100001 3300025230 Bacteria 4013775
31 Ga0209563_102019 3300025230 Bacteria 4846
32 Ga0207427_100054 3300025231 Bacteria 216315
33 Ga0209437_100339 3300025233 Bacteria 56482
34 Ga0209677_100001 3300025253 Bacteria 4013787
35 Ga0209677_100357 3300025253 Bacteria 28255
36 Ga0209148_1000152 3300025254 Bacteria 153782
37 Ga0209233_1000001 3300025261 Bacteria 2992747
38 Ga0209455_1000134 3300025272 Bacteria 153783
39 Ga0209455_1000704 3300025272 Bacteria 19539
40 Ga0207647_10016592 3300025904 Bacteria 5022
41 Ga0207705_10066305 3300025909 Bacteria 2610
42 Ga0307515_10119515 3300028794 Bacteria 2997
43 Ga0307407_10061007 3300031903 Bacteria 2203
44 Ga0307414_10108422 3300032004 Bacteria 2107
45 Ga0395900_0077839 3300037418 Bacteria 3407
46 Ga0395900_0083749 3300037418 Bacteria 3276
47 Ga0395898_0000060 3300037466 Bacteria 273835
48 Ga0395901_0077352 3300038443 Bacteria 3473
49 Ga0466965_0003549 3300044683 Bacteria 6852
50 Ga0466965_0042280 3300044683 Bacteria 2247
51 Ga0466966_0068623 3300044684 Bacteria 2225
52 Ga0466966_0166994 3300044684 Bacteria 1338
53 Ga0466961_0029753 3300044693 Bacteria 3508
54 Ga0466961_0038179 3300044693 Bacteria 3080
55 Ga0466961_0042127 3300044693 Bacteria 2927
56 Ga0466970_0007659 3300044765 Bacteria 5414
57 Ga0466959_0013967 3300045049 Bacteria 5829
58 Ga0495590_0000162 3300046457 Bacteria 39932
59 Ga0495609_0081374 3300046538 Bacteria 1416
60 Ga0496102_0037264 3300048905 Bacteria 4386
61 Ga0496103_0071547 3300048906 Bacteria 2171
62 Ga0496104_0086930 3300048907 Bacteria 2985
63 Ga0496104_0335389 3300048907 Bacteria 1425
64 Ga0496115_0179131 3300048918 Bacteria 1752
65 Ga0496117_0000178 3300048920 Bacteria 131062
66 Ga0496117_0001480 3300048920 Bacteria 33719
67 Ga0496117_0002661 3300048920 Bacteria 22132
68 Ga0496117_0047276 3300048920 Bacteria 3087
69 Ga0496118_0000374 3300048921 Bacteria 75346
70 Ga0496118_0024425 3300048921 Bacteria 5215
71 Ga0496119_0048837 3300048922 Bacteria 2620
72 Ga0496119_0067393 3300048922 Bacteria 2111
73 Ga0496121_0094546 3300048924 Bacteria 2325
74 Ga0496122_0000553 3300048925 Bacteria 77088
75 Ga0496122_0047440 3300048925 Bacteria 3316
76 Ga0496122_0069147 3300048925 Bacteria 2531
77 Ga0496123_0003723 3300048926 Bacteria 16778
78 Ga0496123_0021272 3300048926 Bacteria 5046
79 Ga0496123_0071566 3300048926 Bacteria 2162
80 Ga0496124_0000075 3300048927 Bacteria 218086
81 Ga0496124_0038570 3300048927 Bacteria 4147
82 Ga0496126_0001521 3300048929 Bacteria 35749
83 Ga0501031_0002463 3300049568 Bacteria 11812
84 Ga0501031_0024830 3300049568 Bacteria 3908
85 Ga0501032_0004359 3300049569 Bacteria 10686
86 Ga0501032_0065146 3300049569 Bacteria 2437
87 Ga0501032_0137307 3300049569 Bacteria 1611
88 Ga0501033_0004481 3300049570 Bacteria 11173
89 Ga0501033_0005497 3300049570 Bacteria 10033
90 Ga0501033_0023565 3300049570 Bacteria 4642
91 Ga0501033_0059015 3300049570 Bacteria 2833
92 Ga0501034_0000357 3300049571 Bacteria 78090
93 Ga0501034_0019898 3300049571 Bacteria 6857
94 Ga0501034_0049185 3300049571 Bacteria 4254
95 Ga0501034_0051971 3300049571 Bacteria 4131
96 Ga0501034_0077394 3300049571 Bacteria 3332
97 Ga0501034_0273005 3300049571 Bacteria 1631
98 Ga0501036_0003309 3300049572 Bacteria 12861
99 Ga0501036_0017184 3300049572 Bacteria 6047
100 Ga0501036_0025798 3300049572 Bacteria 4959
101 Ga0501036_0121250 3300049572 Bacteria 2208
102 Ga0501037_0000337 3300049573 Bacteria 39757
103 Ga0501037_0010492 3300049573 Bacteria 6804
104 Ga0501037_0019175 3300049573 Bacteria 5041
105 Ga0501038_0008264 3300049574 Bacteria 9580
106 Ga0501038_0014636 3300049574 Bacteria 7148
107 Ga0501038_0017106 3300049574 Bacteria 6559
108 Ga0501039_0003026 3300049575 Bacteria 12571
109 Ga0501039_0014337 3300049575 Bacteria 6069
110 Ga0501042_0002563 3300049578 Bacteria 11178
111 Ga0501042_0024569 3300049578 Bacteria 4227
112 Ga0501043_0007043 3300049579 Bacteria 8950
113 Ga0501043_0009385 3300049579 Bacteria 7683
114 Ga0501043_0111034 3300049579 Bacteria 2152
115 Ga0501046_0003519 3300049580 Bacteria 14346
116 Ga0501046_0021063 3300049580 Bacteria 5384
117 Ga0501046_0037328 3300049580 Bacteria 3904
118 Ga0501047_0003789 3300049581 Bacteria 14231
119 Ga0501047_0040514 3300049581 Bacteria 4505
120 Ga0501047_0165399 3300049581 Bacteria 2082
121 Ga0501047_0168046 3300049581 Bacteria 2063
122 Ga0501048_0003021 3300049582 Bacteria 12841
123 Ga0501068_0107101 3300049584 Bacteria 1736
124 Ga0501070_0000034 3300049586 Bacteria 128605
125 Ga0501070_0023123 3300049586 Bacteria 5206
126 Ga0501070_0103105 3300049586 Bacteria 2359
127 Ga0501070_0142150 3300049586 Bacteria 1981
128 Ga0501071_0000226 3300049587 Bacteria 25850
129 Ga0501073_0000022 3300049589 Bacteria 130383
130 Ga0501073_0003635 3300049589 Bacteria 11593
131 Ga0501074_0068497 3300049590 Bacteria 2551
132 Ga0501074_0187330 3300049590 Bacteria 1476
133 Ga0501080_0000040 3300049742 Bacteria 81733
134 Ga0501080_0275557 3300049742 Bacteria 1530
135 Ga0501083_0000016 3300049744 Bacteria 156309
136 Ga0501083_0014370 3300049744 Bacteria 5536
137 Ga0501035_0005125 3300049822 Bacteria 12402
138 Ga0501035_0029559 3300049822 Bacteria 4998
139 Ga0501035_0049881 3300049822 Bacteria 3752
140 Ga0501035_0051971 3300049822 Bacteria 3667
141 Ga0501035_0077691 3300049822 Bacteria 2933
142 Ga0501044_0017404 3300049823 Bacteria 7710
143 Ga0501044_0031314 3300049823 Bacteria 5599
144 Ga0501044_0131123 3300049823 Bacteria 2500
145 Ga0501045_0007614 3300049824 Bacteria 7528
146 Ga0501045_0009199 3300049824 Bacteria 6904
147 Ga0500635_0000002 3300053080 Bacteria 265613
148 Ga0500650_0014827 3300053098 Bacteria 3306
149 Ga0500556_0000008 3300053104 Bacteria 304943
150 Ga0500559_0000129 3300053136 Bacteria 58778
151 Ga0500559_0000813 3300053136 Bacteria 20321
152 Ga0500559_0008343 3300053136 Bacteria 4549
153 Ga0500568_0000003 3300053139 Bacteria 863587
154 Ga0500568_0006298 3300053139 Bacteria 5978
155 Ga0500573_0000052 3300053140 Bacteria 94687
156 Ga0500573_0000154 3300053140 Bacteria 27843
157 Ga0500573_0008483 3300053140 Bacteria 5661
158 Ga0500573_0023153 3300053140 Bacteria 3567
159 Ga0500616_0000126 3300053153 Bacteria 134967
160 Ga0500616_0000782 3300053153 Bacteria 36564
161 Ga0501084_0193155 3300054114 Bacteria 1718
162 2939664383 2939660829 Bacteria 3784848
163 2587863556 2585428094 Bacteria 3604039
164 2643768687 2643221549 Bacteria 4042819
165 2643876533 2643221572 Bacteria 3614809
166 2644098067 2643221616 Bacteria 4066575
167 2644112092 2643221619 Bacteria 4158469
168 2644182248 2643221632 Bacteria 3406696
169 2644277990 2643221649 Bacteria 3867359
170 2644383588 2643221669 Bacteria 3611286
171 2723643240 2721755702 Bacteria 4373124
172 2753300332 2751185788 Bacteria 4541048
173 2808900927 2808606372 Bacteria 4649509
174 2844843473 2844841374 Bacteria 3917147
175 2852644281 2852643534 Bacteria 3013378
176 2857734663 2857733635 Bacteria 3532004
177 2862993715 2862993130 Bacteria 3860849
178 2870622047 2870622029 Bacteria 3643329
179 2884766615 2884763398 Bacteria 4091164
180 2895660741 2895660088 Bacteria 3782833
181 2904433908 2904430863 Bacteria 3486923
182 2904502218 2904501621 Bacteria 3401437
183 2908677232 2908674828 Bacteria 3382763
184 2909076224 2909074476 Bacteria 3436050
185 2919042073 2919039151 Bacteria 3391018
186 2919044261 2919042368 Bacteria 3905917
187 2919055480 2919055335 Bacteria 3875751
188 2919445487 2919443155 Bacteria 4072969
189 2919525619 2919523602 Bacteria 3788128
190 2928107253 2928104781 Bacteria 3877447
191 2928153634 2928153084 Bacteria 4020257
192 2928503216 2928500415 Bacteria 3384541
193 2935412012 2935409751 Bacteria 4179611
194 2939659636 2939657138 Bacteria 3740283
195 2964328259 2964326757 Bacteria 3290868
196 2966926186 2966924647 Bacteria 3268643
197 2995728755 2995726249 Bacteria 3470435
198 8002811534 8002811521 Bacteria 2942897
199 8046353884 8046352972 Bacteria 3613806
200 8055035088 8055034563 Bacteria 3562128
201 8055039246 8055037949 Bacteria 3337834
202 8057347319 8057345674 Bacteria 4160394
203 JGI24740J21852_10030350
204 JGI24737J22298_10026427
205 JGI24735J21928_10000960
206 JGI25164J39214_1000186
207 JGI25165J46597_1000055
208 Ga0006562J51391_1011800
209 Ga0006562J51391_1011802
210 Ga0055539_1000019
211 Ga0055533_1000023
212 Ga0055525_1000125
213 Ga0055527_1000032
214 Ga0055542_1000164
215 Ga0055529_1000499
216 Ga0065714_10066675
217 Ga0070658_10016903
218 Ga0070668_100070977
219 Ga0070714_100100040
220 Ga0105249_10229105
221 Ga0157370_10141152
222 Ga0157369_10000379
223 Ga0157369_10053467
224 Ga0157369_10125804
225 Ga0157372_10084012
226 Ga0157380_10014705
227 Ga0206353_11038664
228 Ga0209566_100031
229 Ga0209674_100001
230 Ga0209672_100006
231 Ga0209147_101031
232 Ga0209563_100001
233 Ga0209563_102019
234 Ga0207427_100054
235 Ga0209437_100339
236 Ga0209677_100001
237 Ga0209677_100357
238 Ga0209148_1000152
239 Ga0209233_1000001
240 Ga0209455_1000134
241 Ga0209455_1000704
242 Ga0207647_10016592
243 Ga0207705_10066305
244 Ga0307515_10119515
245 Ga0307407_10061007
246 Ga0307414_10108422
247 Ga0395900_0077839
248 Ga0395900_0083749
249 Ga0395898_0000060
250 Ga0395901_0077352
251 Ga0466965_0003549
252 Ga0466965_0042280
253 Ga0466966_0068623
254 Ga0466966_0166994
255 Ga0466961_0029753
256 Ga0466961_0038179
257 Ga0466961_0042127
258 Ga0466970_0007659
259 Ga0466959_0013967
260 Ga0495590_0000162
261 Ga0495609_0081374
262 Ga0496102_0037264
263 Ga0496103_0071547
264 Ga0496104_0086930
265 Ga0496104_0335389
266 Ga0496115_0179131
267 Ga0496117_0000178
268 Ga0496117_0001480
269 Ga0496117_0002661
270 Ga0496117_0047276
271 Ga0496118_0000374
272 Ga0496118_0024425
273 Ga0496119_0048837
274 Ga0496119_0067393
275 Ga0496121_0094546
276 Ga0496122_0000553
277 Ga0496122_0047440
278 Ga0496122_0069147
279 Ga0496123_0003723
280 Ga0496123_0021272
281 Ga0496123_0071566
282 Ga0496124_0000075
283 Ga0496124_0038570
284 Ga0496126_0001521
285 Ga0501031_0002463
286 Ga0501031_0024830
287 Ga0501032_0004359
288 Ga0501032_0065146
289 Ga0501032_0137307
290 Ga0501033_0004481
291 Ga0501033_0005497
292 Ga0501033_0023565
293 Ga0501033_0059015
294 Ga0501034_0000357
295 Ga0501034_0019898
296 Ga0501034_0049185
297 Ga0501034_0051971
298 Ga0501034_0077394
299 Ga0501034_0273005
300 Ga0501036_0003309
301 Ga0501036_0017184
302 Ga0501036_0025798
303 Ga0501036_0121250
304 Ga0501037_0000337
305 Ga0501037_0010492
306 Ga0501037_0019175
307 Ga0501038_0008264
308 Ga0501038_0014636
309 Ga0501038_0017106
310 Ga0501039_0003026
311 Ga0501039_0014337
312 Ga0501042_0002563
313 Ga0501042_0024569
314 Ga0501043_0007043
315 Ga0501043_0009385
316 Ga0501043_0111034
317 Ga0501046_0003519
318 Ga0501046_0021063
319 Ga0501046_0037328
320 Ga0501047_0003789
321 Ga0501047_0040514
322 Ga0501047_0165399
323 Ga0501047_0168046
324 Ga0501048_0003021
325 Ga0501068_0107101
326 Ga0501070_0000034
327 Ga0501070_0023123
328 Ga0501070_0103105
329 Ga0501070_0142150
330 Ga0501071_0000226
331 Ga0501073_0000022
332 Ga0501073_0003635
333 Ga0501074_0068497
334 Ga0501074_0187330
335 Ga0501080_0000040
336 Ga0501080_0275557
337 Ga0501083_0000016
338 Ga0501083_0014370
339 Ga0501035_0005125
340 Ga0501035_0029559
341 Ga0501035_0049881
342 Ga0501035_0051971
343 Ga0501035_0077691
344 Ga0501044_0017404
345 Ga0501044_0031314
346 Ga0501044_0131123
347 Ga0501045_0007614
348 Ga0501045_0009199
349 Ga0500635_0000002
350 Ga0500650_0014827
351 Ga0500556_0000008
352 Ga0500559_0000129
353 Ga0500559_0000813
354 Ga0500559_0008343
355 Ga0500568_0000003
356 Ga0500568_0006298
357 Ga0500573_0000052
358 Ga0500573_0000154
359 Ga0500573_0008483
360 Ga0500573_0023153
361 Ga0500616_0000126
362 Ga0500616_0000782
363 Ga0501084_0193155
364 2939664383
365 2587863556
366 2643768687
367 2643876533
368 2644098067
369 2644112092
370 2644182248
371 2644277990
372 2644383588
373 2723643240
374 2753300332
375 2808900927
376 2844843473
377 2852644281
378 2857734663
379 2862993715
380 2870622047
381 2884766615
382 2895660741
383 2904433908
384 2904502218
385 2908677232
386 2909076224
387 2919042073
388 2919044261
389 2919055480
390 2919445487
391 2919525619
392 2928107253
393 2928153634
394 2928503216
395 2935412012
396 2939659636
397 2964328259
398 2966926186
399 2995728755
400 8002811534
401 8046353884
402 8055035088
403 8055039246
404 8057347319

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF18073

Rubredoxin_2

Rubredoxin metal binding domain

4

30

0.96

PF06745

ATPase

KaiC

67

150

0.94

PF03796

DnaB_C

DnaB-like helicase C terminal domain

67

141

0.89

PF05362

Lon_C

Lon protease (S16) C-terminal proteolytic domain

325

423

0.87

PF13541

ChlI

Subunit ChlI of Mg-chelatase

325

422

0.87

PF13401

AAA_22

AAA domain

84

213

0.84

PF13481

AAA_25

AAA domain

53

217

0.81

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

88

235

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
5h45-assembly1.cif.gz_B crystal structure of the c-terminal lon protease-like domain of thermus thermophilus rada/sms 0.9569 285 437
5lkq-assembly1.cif.gz_B protease domain of rada 0.9284 280 439
5h45-assembly1.cif.gz_B crystal structure of the c-terminal lon protease-like domain of thermus thermophilus rada/sms 0.9275 285 437
8dvh-assembly1.cif.gz_B crystal structure of atp-dependent lon protease from bacillus subtillis (bslonba) 0.8805 289 437
8dvh-assembly1.cif.gz_A crystal structure of atp-dependent lon protease from bacillus subtillis (bslonba) 0.8601 293 425
ID Description Score Start End Superfamily
af_P9WHJ9_62_274_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9798 66 274 3.40.50.300
af_F4K8X8_240_443_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.979 79 276 3.40.50.300
af_P24554_314_459_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9762 311 437 3.30.230.10
af_Q2G243_272_444_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9728 285 439 3.30.230.10
af_P24554_64_278_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9654 58 274 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A6J7FUY7-F1-model_v4 Unannotated protein 1.001 325 439 GO:0000725
GO:0005829
AF-A0A5M3WAY9-F1-model_v4 DNA repair protein RadA 0.9885 88 423 GO:0000725
GO:0003684
GO:0005524
GO:0005829
GO:0016887
GO:0046872
GO:0140664
AF-W1XIA3-F1-model_v4 DNA repair protein RadA 0.9848 296 404 GO:0000725
GO:0005829
AF-T1A795-F1-model_v4 DNA repair protein RadA 0.9845 308 397 GO:0000725
GO:0005829
AF-A0A534VRD1-F1-model_v4 DNA repair protein RadA 0.9839 310 423 GO:0000725
GO:0004176
GO:0004252
GO:0006508

Map