F310587

General Info

Members Datasets Scaffolds Average Seq Length
202 163 404 310

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2984572630|2984576569
Length 340
Sequence IGRNKFCSYIYITNYIINYFKMDFFNKTGKMALGSRLRLLTAKVTEDSSKIYELYKVTFLPKWFPVFFILSEEGPKTITEIAEEIGHSQPSVTQIIKEMTKAGLVENNLLSTDKRRNVAGLTDEGKAIAKRMIEGQCADIEAAIRQIEQETAHNLWEAIAEWEHLLEQKPLYKRVQEQKKIRESRDVQIVPYSTQYQNAFRSLNEEWISNYFEMEEADYKALDHPEEYILDQGGKIFVALYQNEPVGVCALIKMDDPEYDFEMAKMAVSPKAQGKNIGYLLGQKVIDAARASGASKIYLESNTILKPAISLYYKLGFQKISGRPTPYQRCNIQMELNLKV

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
12 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
22 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
44 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
50 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
53 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
57 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
58 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
78 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
79 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
80 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
84 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
85 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
90 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
91 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
92 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
93 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
94 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
95 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
96 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
97 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
98 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
99 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
100 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
101 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
102 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
103 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
104 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
105 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
106 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
107 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
108 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
109 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
110 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
111 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
112 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
115 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
116 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
117 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
118 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
121 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
122 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
123 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
124 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
125 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
126 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
127 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
128 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
129 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
130 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
131 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
132 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
133 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
134 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
135 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
136 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
137 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
138 2984572630 Chryseobacterium sp. SORGH_AS909 Isolate Aerial Root
139 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
140 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
141 2738541278 Niastella sp. CF465 Isolate Unclassified
142 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
143 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
144 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
145 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
146 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
147 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
148 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
149 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
150 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
151 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
152 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
153 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
154 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
155 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
156 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
157 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
158 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
159 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
160 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
161 2984606641 Chryseobacterium sp. SORGH_AS1175 Isolate Aerial Root
162 8015556637 Bdellovibrio reynosensis LBG001 Isolate Rhizosphere
163 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.63
Metatranscriptomes 0
Isolates 13.37

Biome Distribution

Category Percentage (%)
Aerial Root 0.99
Bulb 0
Endosphere 19.31
Nodule 0
Rhizoplane 1.98
Rhizosphere 62.87
Stem 0
Stem Tuber 0
Unclassified 7.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_537508 2162886007 Bacteria 5680
2 SwRhRL2b_contig_538870 2162886007 Bacteria 44374
3 JGI25154J39366_1000001 3300002738 Bacteria 483450
4 JGI25152J39213_1000128 3300002773 Bacteria 51965
5 JGI25150J39212_1000021 3300002774 Bacteria 133190
6 JGI25151J46595_10000078 3300003187 Bacteria 133190
7 JGI25153J46596_10000057 3300003215 Bacteria 133190
8 rootH1_10143399 3300003316 Bacteria 2758
9 rootH2_10007402 3300003320 Bacteria 2356
10 rootH2_10054236 3300003320 Bacteria 7123
11 rootL2_10066305 3300003322 Bacteria 5727
12 rootL2_10075943 3300003322 Bacteria 11230
13 rootL2_10135907 3300003322 Unclassified 2185
14 rootL2_10253377 3300003322 Bacteria 5239
15 rootL2_10329225 3300003322 Bacteria 1039
16 rootH1_10008400 3300003323 Bacteria 11999
17 rootH1_10055813 3300003323 Bacteria 2890
18 Ga0055535_1005863 3300003761 Bacteria 2603
19 Ga0055542_1003469 3300003762 Bacteria 4253
20 Ga0055530_10001390 3300003791 Bacteria 17892
21 Ga0065714_10002546 3300005288 Bacteria 24041
22 Ga0065714_10067265 3300005288 Bacteria 5716
23 Ga0065714_10087890 3300005288 Bacteria 2027
24 Ga0065704_10000326 3300005289 Bacteria 76230
25 Ga0065704_10002345 3300005289 Bacteria 11247
26 Ga0070683_100002433 3300005329 Bacteria 14801
27 Ga0070666_10021913 3300005335 Bacteria 4144
28 Ga0070668_100042753 3300005347 Bacteria 3473
29 Ga0070673_100238920 3300005364 Unclassified 1579
30 Ga0070667_100047163 3300005367 Bacteria 3625
31 Ga0070667_100130275 3300005367 Unclassified 2195
32 Ga0070678_100026585 3300005456 Bacteria 3915
33 Ga0070685_10318032 3300005466 Bacteria 1054
34 Ga0070707_100134703 3300005468 Bacteria 2403
35 Ga0070665_100213218 3300005548 Bacteria 1932
36 Ga0070665_100439943 3300005548 Bacteria 1313
37 Ga0070664_100442719 3300005564 Bacteria 1192
38 Ga0068857_100012394 3300005577 Bacteria 7421
39 Ga0068859_100281940 3300005617 Unclassified 1754
40 Ga0068866_10021963 3300005718 Bacteria 2947
41 Ga0068861_100168347 3300005719 Unclassified 1814
42 Ga0068870_10014915 3300005840 Bacteria 3678
43 Ga0068860_100111036 3300005843 Unclassified 2621
44 Ga0068865_100009022 3300006881 Bacteria 6168
45 Ga0097620_100281922 3300006931 Unclassified 1754
46 Ga0105244_10139611 3300009036 Bacteria 1166
47 Ga0105240_10015631 3300009093 Bacteria 10307
48 Ga0114129_10003132 3300009147 Bacteria 23207
49 Ga0105242_10067729 3300009176 Bacteria 2952
50 Ga0105246_10080440 3300011119 Unclassified 2320
51 Ga0157373_10000009 3300013100 Bacteria 201551
52 Ga0157373_10000139 3300013100 Bacteria 57722
53 Ga0157371_10014471 3300013102 Bacteria 5952
54 Ga0157370_10109109 3300013104 Bacteria 2587
55 Ga0157369_10107300 3300013105 Bacteria 2971
56 Ga0157374_10052002 3300013296 Bacteria 3814
57 Ga0157378_10020446 3300013297 Bacteria 5820
58 Ga0182008_10000028 3300014497 Bacteria 176968
59 Ga0182006_1000048 3300015261 Bacteria 184700
60 Ga0182006_1000356 3300015261 Bacteria 38331
61 Ga0182006_1003020 3300015261 Bacteria 8853
62 Ga0182005_1000023 3300015265 Bacteria 246328
63 Ga0163161_10000056 3300017792 Bacteria 114387
64 Ga0163161_10004227 3300017792 Bacteria 10019
65 Ga0163161_10004607 3300017792 Bacteria 9596
66 Ga0163161_10054636 3300017792 Bacteria 2898
67 Ga0209436_101740 3300025208 Bacteria 7154
68 Ga0209258_100193 3300025242 Bacteria 124682
69 Ga0207425_1000004 3300025245 Bacteria 1092421
70 Ga0209646_1001242 3300025246 Bacteria 7257
71 Ga0209148_1000167 3300025254 Bacteria 135407
72 Ga0209129_1000048 3300025258 Bacteria 270192
73 Ga0209676_1000001 3300025292 Bacteria 1852142
74 Ga0209025_1000009 3300025294 Bacteria 1092561
75 Ga0209758_1000010 3300025297 Bacteria 1092782
76 Ga0209050_1000018 3300025298 Bacteria 723263
77 Ga0209050_1001034 3300025298 Bacteria 34514
78 Ga0207426_1007449 3300025302 Bacteria 4581
79 Ga0207645_10002369 3300025907 Bacteria 14862
80 Ga0207643_10004791 3300025908 Bacteria 7250
81 Ga0207695_10325287 3300025913 Bacteria 1427
82 Ga0207646_10375985 3300025922 Bacteria 1283
83 Ga0207686_10034866 3300025934 Unclassified 3015
84 Ga0207691_10013075 3300025940 Bacteria 7947
85 Ga0207689_10004648 3300025942 Bacteria 12417
86 Ga0207661_10017446 3300025944 Bacteria 5314
87 Ga0207668_10036644 3300025972 Bacteria 3275
88 Ga0207658_10070996 3300025986 Unclassified 2636
89 Ga0207658_10078308 3300025986 Bacteria 2526
90 Ga0207639_10228260 3300026041 Bacteria 1612
91 Ga0207648_10004329 3300026089 Bacteria 14622
92 Ga0207674_10324754 3300026116 Bacteria 1488
93 Ga0207675_100112770 3300026118 Unclassified 2567
94 Ga0207683_10001520 3300026121 Bacteria 20897
95 Ga0268266_10380389 3300028379 Bacteria 1331
96 Ga0268264_10479174 3300028381 Bacteria 1210
97 Ga0316177_1050253 3300030731 Bacteria 6794
98 Ga0316176_1192003 3300030732 Bacteria 6240
99 Ga0307410_10004932 3300031852 Bacteria 6992
100 Ga0307407_10000065 3300031903 Bacteria 41572
101 Ga0307412_10000004 3300031911 Bacteria 544053
102 Ga0307414_10000873 3300032004 Bacteria 15410
103 Ga0307414_10064173 3300032004 Bacteria 2613
104 Ga0307414_10157291 3300032004 Bacteria 1801
105 Ga0373927_0235476 3300035695 Bacteria 1203
106 Ga0395905_0028671 3300037471 Bacteria 5247
107 Ga0451793_1469151 3300041452 Bacteria 986
108 Ga0451853_1301099 3300041512 Bacteria 1652
109 Ga0439449_0014818 3300042007 Bacteria 2930
110 Ga0466957_0002726 3300044842 Bacteria 9551
111 Ga0466957_0005067 3300044842 Bacteria 7375
112 Ga0495638_0000039 3300046460 Bacteria 247726
113 Ga0495650_0000023 3300046471 Bacteria 527763
114 Ga0495650_0033107 3300046471 Bacteria 2304
115 Ga0495585_0000638 3300046492 Bacteria 32286
116 Ga0495583_0078992 3300046506 Bacteria 1432
117 Ga0495606_0015549 3300046507 Bacteria 5855
118 Ga0495606_0043691 3300046507 Bacteria 2986
119 Ga0495606_0060952 3300046507 Bacteria 2415
120 Ga0495610_0002450 3300046512 Bacteria 15599
121 Ga0495610_0058072 3300046512 Bacteria 1853
122 Ga0495616_0000975 3300046513 Bacteria 20508
123 Ga0495648_0003198 3300046524 Bacteria 14560
124 Ga0495663_0000039 3300046525 Bacteria 68141
125 Ga0495663_0064729 3300046525 Bacteria 1155
126 Ga0495609_0003506 3300046538 Bacteria 8965
127 Ga0495609_0005997 3300046538 Bacteria 6273
128 Ga0495609_0043053 3300046538 Bacteria 2027
129 Ga0495633_0007671 3300046558 Bacteria 6176
130 Ga0495625_0000308 3300046660 Bacteria 74661
131 Ga0495625_0000668 3300046660 Bacteria 48864
132 Ga0495625_0007363 3300046660 Bacteria 9594
133 Ga0495625_0071172 3300046660 Bacteria 2441
134 Ga0495661_0011791 3300046665 Bacteria 5921
135 Ga0495649_0000105 3300046694 Bacteria 74750
136 Ga0495683_0058033 3300047323 Bacteria 1923
137 Ga0495687_000304 3300047443 Bacteria 64746
138 Ga0495673_0061462 3300047469 Bacteria 1608
139 Ga0495686_0000372 3300047472 Bacteria 72285
140 Ga0495614_0014186 3300048089 Bacteria 3492
141 Ga0496105_0526675 3300048908 Bacteria 925
142 Ga0496110_0003102 3300048913 Bacteria 12612
143 Ga0496111_0139415 3300048914 Bacteria 1797
144 Ga0496122_0002673 3300048925 Bacteria 24837
145 Ga0501300_004135 3300049523 Bacteria 2156
146 Ga0501047_0074246 3300049581 Bacteria 3274
147 Ga0501249_034737 3300049679 Bacteria 1132
148 Ga0501225_0000755 3300049705 Bacteria 10139
149 Ga0501241_000986 3300049758 Bacteria 5987
150 Ga0501264_002451 3300049761 Bacteria 1731
151 Ga0501280_000605 3300049776 Bacteria 8238
152 Ga0501044_0077643 3300049823 Bacteria 3367
153 Ga0501044_0199120 3300049823 Unclassified 1962
154 nmdc:mga03683_75280_c1 3300050489 Bacteria 1449
155 nmdc:mga0k408_1214_c1 3300050493 Bacteria 14107
156 nmdc:mga0k408_87870_c1 3300050493 Unclassified 1826
157 nmdc:mga05p37_6756_c1 3300050507 Bacteria 13525
158 Ga0500578_0000034 3300053086 Bacteria 136582
159 Ga0500644_0000081 3300053088 Bacteria 58662
160 Ga0500646_0007622 3300053090 Unclassified 2765
161 Ga0500583_0000063 3300053092 Bacteria 66256
162 Ga0500641_0001235 3300053096 Bacteria 9088
163 Ga0500569_001896 3300053109 Bacteria 4032
164 Ga0500614_032447 3300053123 Bacteria 1285
165 Ga0500658_0000017 3300053134 Bacteria 142994
166 Ga0500658_0003060 3300053134 Bacteria 6401
167 Ga0500568_0000609 3300053139 Bacteria 25906
168 Ga0500573_0109698 3300053140 Bacteria 1545
169 Ga0500577_0004218 3300053142 Unclassified 3782
170 Ga0500589_009310 3300053147 Bacteria 4150
171 Ga0500616_0000037 3300053153 Bacteria 390473
172 Ga0500616_0009825 3300053153 Bacteria 5770
173 Ga0500633_0000195 3300053160 Bacteria 8457
174 Ga0500636_0055933 3300053177 Unclassified 2312
175 Ga0500636_0185524 3300053177 Bacteria 1113
176 2984576569 2984572630 Bacteria 4186940
177 2513233859 2513020052 Bacteria 5120511
178 2644008733 2643221600 Bacteria 5530138
179 2738727128 2738541278 Bacteria 9755573
180 2738731833 2738541278 Bacteria 9755573
181 2738736888 2738541279 Bacteria 6149495
182 2738769428 2738541285 Bacteria 6150075
183 2739218463 2738543007 Bacteria 6149845
184 2776613484 2775506987 Bacteria 5373360
185 2819572365 2818991442 Bacteria 8318214
186 2819679146 2818991460 Bacteria 7595395
187 2821140267 2821136567 Bacteria 8080116
188 2842905673 2842903701 Bacteria 6986368
189 2857620799 2857618242 Bacteria 5635925
190 2884791653 2884791551 Bacteria 8511252
191 2904472392 2904467357 Bacteria 8057758
192 2904559505 2904555929 Bacteria 5218588
193 2919195106 2919191525 Bacteria 5765973
194 2929156907 2929154850 Bacteria 6753285
195 2929181744 2929177148 Bacteria 7883697
196 2945984141 2945977869 Bacteria 7777518
197 2946016465 2946013367 Bacteria 7766675
198 2958461712 2958458903 Bacteria 5301041
199 2958513933 2958512119 Bacteria 4528530
200 2984610024 2984606641 Bacteria 4186971
201 8015557812 8015556637 Bacteria 3582323
202 8054311254 8054307821 Bacteria 5212224
203 SwRhRL2b_contig_537508
204 SwRhRL2b_contig_538870
205 JGI25154J39366_1000001
206 JGI25152J39213_1000128
207 JGI25150J39212_1000021
208 JGI25151J46595_10000078
209 JGI25153J46596_10000057
210 rootH1_10143399
211 rootH2_10007402
212 rootH2_10054236
213 rootL2_10066305
214 rootL2_10075943
215 rootL2_10135907
216 rootL2_10253377
217 rootL2_10329225
218 rootH1_10008400
219 rootH1_10055813
220 Ga0055535_1005863
221 Ga0055542_1003469
222 Ga0055530_10001390
223 Ga0065714_10002546
224 Ga0065714_10067265
225 Ga0065714_10087890
226 Ga0065704_10000326
227 Ga0065704_10002345
228 Ga0070683_100002433
229 Ga0070666_10021913
230 Ga0070668_100042753
231 Ga0070673_100238920
232 Ga0070667_100047163
233 Ga0070667_100130275
234 Ga0070678_100026585
235 Ga0070685_10318032
236 Ga0070707_100134703
237 Ga0070665_100213218
238 Ga0070665_100439943
239 Ga0070664_100442719
240 Ga0068857_100012394
241 Ga0068859_100281940
242 Ga0068866_10021963
243 Ga0068861_100168347
244 Ga0068870_10014915
245 Ga0068860_100111036
246 Ga0068865_100009022
247 Ga0097620_100281922
248 Ga0105244_10139611
249 Ga0105240_10015631
250 Ga0114129_10003132
251 Ga0105242_10067729
252 Ga0105246_10080440
253 Ga0157373_10000009
254 Ga0157373_10000139
255 Ga0157371_10014471
256 Ga0157370_10109109
257 Ga0157369_10107300
258 Ga0157374_10052002
259 Ga0157378_10020446
260 Ga0182008_10000028
261 Ga0182006_1000048
262 Ga0182006_1000356
263 Ga0182006_1003020
264 Ga0182005_1000023
265 Ga0163161_10000056
266 Ga0163161_10004227
267 Ga0163161_10004607
268 Ga0163161_10054636
269 Ga0209436_101740
270 Ga0209258_100193
271 Ga0207425_1000004
272 Ga0209646_1001242
273 Ga0209148_1000167
274 Ga0209129_1000048
275 Ga0209676_1000001
276 Ga0209025_1000009
277 Ga0209758_1000010
278 Ga0209050_1000018
279 Ga0209050_1001034
280 Ga0207426_1007449
281 Ga0207645_10002369
282 Ga0207643_10004791
283 Ga0207695_10325287
284 Ga0207646_10375985
285 Ga0207686_10034866
286 Ga0207691_10013075
287 Ga0207689_10004648
288 Ga0207661_10017446
289 Ga0207668_10036644
290 Ga0207658_10070996
291 Ga0207658_10078308
292 Ga0207639_10228260
293 Ga0207648_10004329
294 Ga0207674_10324754
295 Ga0207675_100112770
296 Ga0207683_10001520
297 Ga0268266_10380389
298 Ga0268264_10479174
299 Ga0316177_1050253
300 Ga0316176_1192003
301 Ga0307410_10004932
302 Ga0307407_10000065
303 Ga0307412_10000004
304 Ga0307414_10000873
305 Ga0307414_10064173
306 Ga0307414_10157291
307 Ga0373927_0235476
308 Ga0395905_0028671
309 Ga0451793_1469151
310 Ga0451853_1301099
311 Ga0439449_0014818
312 Ga0466957_0002726
313 Ga0466957_0005067
314 Ga0495638_0000039
315 Ga0495650_0000023
316 Ga0495650_0033107
317 Ga0495585_0000638
318 Ga0495583_0078992
319 Ga0495606_0015549
320 Ga0495606_0043691
321 Ga0495606_0060952
322 Ga0495610_0002450
323 Ga0495610_0058072
324 Ga0495616_0000975
325 Ga0495648_0003198
326 Ga0495663_0000039
327 Ga0495663_0064729
328 Ga0495609_0003506
329 Ga0495609_0005997
330 Ga0495609_0043053
331 Ga0495633_0007671
332 Ga0495625_0000308
333 Ga0495625_0000668
334 Ga0495625_0007363
335 Ga0495625_0071172
336 Ga0495661_0011791
337 Ga0495649_0000105
338 Ga0495683_0058033
339 Ga0495687_000304
340 Ga0495673_0061462
341 Ga0495686_0000372
342 Ga0495614_0014186
343 Ga0496105_0526675
344 Ga0496110_0003102
345 Ga0496111_0139415
346 Ga0496122_0002673
347 Ga0501300_004135
348 Ga0501047_0074246
349 Ga0501249_034737
350 Ga0501225_0000755
351 Ga0501241_000986
352 Ga0501264_002451
353 Ga0501280_000605
354 Ga0501044_0077643
355 Ga0501044_0199120
356 nmdc:mga03683_75280_c1
357 nmdc:mga0k408_1214_c1
358 nmdc:mga0k408_87870_c1
359 nmdc:mga05p37_6756_c1
360 Ga0500578_0000034
361 Ga0500644_0000081
362 Ga0500646_0007622
363 Ga0500583_0000063
364 Ga0500641_0001235
365 Ga0500569_001896
366 Ga0500614_032447
367 Ga0500658_0000017
368 Ga0500658_0003060
369 Ga0500568_0000609
370 Ga0500573_0109698
371 Ga0500577_0004218
372 Ga0500589_009310
373 Ga0500616_0000037
374 Ga0500616_0009825
375 Ga0500633_0000195
376 Ga0500636_0055933
377 Ga0500636_0185524
378 2984576569
379 2513233859
380 2644008733
381 2738727128
382 2738731833
383 2738736888
384 2738769428
385 2739218463
386 2776613484
387 2819572365
388 2819679146
389 2821140267
390 2842905673
391 2857620799
392 2884791653
393 2904472392
394 2904559505
395 2919195106
396 2929156907
397 2929181744
398 2945984141
399 2946016465
400 2958461712
401 2958513933
402 2984610024
403 8015557812
404 8054311254

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13412

HTH_24

Winged helix-turn-helix DNA-binding

66

106

0.95

PF01022

HTH_5

Bacterial regulatory protein, arsR family

66

107

0.94

PF01047

MarR

MarR family

63

116

0.93

PF12802

MarR_2

MarR family

57

116

0.93

PF00583

Acetyltransf_1

Acetyltransferase (GNAT) family

199

317

0.85

PF13508

Acetyltransf_7

Acetyltransferase (GNAT) domain

232

319

0.85

PF13673

Acetyltransf_10

Acetyltransferase (GNAT) domain

204

338

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4awx-assembly1.cif.gz_B moonlighting functions of feoc in the regulation of ferrous iron transport in feo 0.9478 42 100
4lb5-assembly1.cif.gz_A-2 crystal structure of pkz zalpha in complex with ds(cg)6 (hexagonal form) 0.9341 42 101
5j6x-assembly2.cif.gz_B crystal structure of the apo-zalpha of zebrafish pkz 0.9129 42 102
4kmf-assembly1.cif.gz_A-2 crystal structure of zalpha domain from carassius auratus pkz in complex with z-dna 0.9105 42 101
4ija-assembly1.cif.gz_B structure of s. aureus methicillin resistance factor mecr2 0.8975 41 100
ID Description Score Start End Superfamily
af_Q54IG0_5_154_3.40.630.30 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Gcn5-related N-acetyltransferase (GNAT) 0.9891 140 285 3.40.630.30
af_Q54IG0_5_154_3.40.630.30 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Gcn5-related N-acetyltransferase (GNAT) 0.9566 140 285 3.40.630.30
af_Q559V1_1_148_3.40.630.30 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Gcn5-related N-acetyltransferase (GNAT) 0.9517 142 288 3.40.630.30
4awxB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9478 42 100 1.10.10.10
af_Q559V1_1_148_3.40.630.30 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Gcn5-related N-acetyltransferase (GNAT) 0.9392 142 288 3.40.630.30
ID Description Score Start End GO Terms
AF-A0A3M8GH54-F1-model_v4 GNAT family N-acetyltransferase 0.9865 141 294 GO:0016747
AF-A0A800ESU1-F1-model_v4 GNAT family N-acetyltransferase 0.9795 140 293 GO:0008080
AF-A0A7I8CYK5-F1-model_v4 N-acetyltransferase domain-containing protein 0.9681 141 293 GO:0016747
AF-A0A3M8GH54-F1-model_v4 GNAT family N-acetyltransferase 0.9678 141 294 GO:0016747
AF-A0A2Z5G1X3-F1-model_v4 Transcriptional regulator, MarR family 0.9615 141 293 GO:0008080

Map