F312237

General Info

Members Datasets Scaffolds Average Seq Length
204 86 408 246

Family's Representative Sequence

Representative Sequence 3300005518|Ga0070699_100026066|Ga0070699_1000260663
Length 274
Sequence MMQVGLPIRLPTSDLASPWLKQSKIISMNSLVASIRERYQYTLDQIAEAARKSNRDPKEIRLVVVTKSQPVDVAEAAIEAGVRILGENYPEEGVMKIQSLAWQSGVEWHMIGHVQSRKARLVADHFALLHSLDSLKLAQRLNRFASESNHILLVLLEFNVGGEESKSGWNAADEARWNMLLPDIAAILDLPNVRVHGLMTMPPLGTEPESSRRFFQRLRLLRDHLATQYPTADWRELSMGTSADYAVAVEEGATLVRVGTAIVGARKYKSENKA

Samples

Sample ID Description Type Environment
1 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
27 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
30 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
31 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
32 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
33 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
43 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
44 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
45 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
46 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
47 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
48 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
49 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
50 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
51 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
52 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
55 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
59 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
60 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
61 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
62 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
63 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
64 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
65 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
66 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
67 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
68 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
69 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
70 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
76 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
79 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
80 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
81 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
82 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
83 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
84 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
85 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
86 2928515477 Acinetobacter bereziniae 1375 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.51
Metatranscriptomes 0
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.53
Stem 0
Stem Tuber 0
Unclassified 24.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070699_100026066 3300005518 Bacteria 5042
2 SwRhRL2b_contig_1913544 2162886007 Bacteria 3661
3 JGI25406J46586_10000640 3300003203 Bacteria 16373
4 Ga0065704_10070377 3300005289 Bacteria 28140
5 Ga0065712_10258724 3300005290 Unclassified 938
6 Ga0065707_10000768 3300005295 Bacteria 12443
7 Ga0065707_10003492 3300005295 Bacteria 5962
8 Ga0065707_10081987 3300005295 Bacteria 26103
9 Ga0065707_10083293 3300005295 Bacteria 9627
10 Ga0070709_10302968 3300005434 Bacteria 1168
11 Ga0070694_100062091 3300005444 Unclassified 2552
12 Ga0070707_100147727 3300005468 Bacteria 2288
13 Ga0070698_100050908 3300005471 Unclassified 4219
14 Ga0070698_100247260 3300005471 Bacteria 1716
15 Ga0070698_100533290 3300005471 Bacteria 1112
16 Ga0070699_100001469 3300005518 Bacteria 21556
17 Ga0070699_100098684 3300005518 Bacteria 2559
18 Ga0070699_100146658 3300005518 Bacteria 2085
19 Ga0070697_100530356 3300005536 Bacteria 1031
20 Ga0070696_100151254 3300005546 Unclassified 1704
21 Ga0070704_100105364 3300005549 Unclassified 2134
22 Ga0070704_100128875 3300005549 Bacteria 1957
23 Ga0068857_100097389 3300005577 Bacteria 2637
24 Ga0068857_100438472 3300005577 Unclassified 1220
25 Ga0068859_100054961 3300005617 Bacteria 4006
26 Ga0068859_100248311 3300005617 Bacteria 1870
27 Ga0068861_100419478 3300005719 Bacteria 1192
28 Ga0068862_100048496 3300005844 Unclassified 3626
29 Ga0068862_100062485 3300005844 Unclassified 3203
30 Ga0068862_100117606 3300005844 Bacteria 2339
31 Ga0081539_10003111 3300005985 Bacteria 21226
32 Ga0081539_10013995 3300005985 Bacteria 5980
33 Ga0075430_100149003 3300006846 Unclassified 1948
34 Ga0075431_100072063 3300006847 Unclassified 3565
35 Ga0075433_10220276 3300006852 Bacteria 1686
36 Ga0075429_100005207 3300006880 Bacteria 11184
37 Ga0075429_100043235 3300006880 Bacteria 3920
38 Ga0075429_100070321 3300006880 Bacteria 3047
39 Ga0075429_100519987 3300006880 Bacteria 1043
40 Ga0097620_100054960 3300006931 Bacteria 4006
41 Ga0097620_100248294 3300006931 Bacteria 1870
42 Ga0105240_10471736 3300009093 Unclassified 1400
43 Ga0114129_10002036 3300009147 Bacteria 27722
44 Ga0114129_10010730 3300009147 Bacteria 13061
45 Ga0114129_10013560 3300009147 Bacteria 11613
46 Ga0114129_10020412 3300009147 Bacteria 9423
47 Ga0114129_10115319 3300009147 Bacteria 3703
48 Ga0114129_10232173 3300009147 Bacteria 2484
49 Ga0114129_10851744 3300009147 Unclassified 1159
50 Ga0105243_10036292 3300009148 Unclassified 3826
51 Ga0105243_10097667 3300009148 Bacteria 2432
52 Ga0105241_10528563 3300009174 Unclassified 1056
53 Ga0105237_10201844 3300009545 Unclassified 1989
54 Ga0105249_10010673 3300009553 Bacteria 8069
55 Ga0105249_10168448 3300009553 Bacteria 2122
56 Ga0105249_10188987 3300009553 Bacteria 2009
57 Ga0105246_10145815 3300011119 Bacteria 1786
58 Ga0157380_10069859 3300014326 Bacteria 2836
59 Ga0213872_10007434 3300021361 Bacteria 5391
60 Ga0207684_10457684 3300025910 Unclassified 1095
61 Ga0207646_10112815 3300025922 Bacteria 2440
62 Ga0207681_10149465 3300025923 Bacteria 1749
63 Ga0207709_10068446 3300025935 Unclassified 2244
64 Ga0207670_10060583 3300025936 Unclassified 2579
65 Ga0207708_10371697 3300026075 Unclassified 1177
66 Ga0207676_10137939 3300026095 Bacteria 2084
67 Ga0207674_10063762 3300026116 Bacteria 3718
68 Ga0268265_10023275 3300028380 Unclassified 4366
69 Ga0268265_10111737 3300028380 Unclassified 2232
70 Ga0268265_10253846 3300028380 Bacteria 1559
71 Ga0265334_10022282 3300028573 Bacteria 2583
72 Ga0265318_10008902 3300028577 Bacteria 4446
73 Ga0265330_10160094 3300031235 Bacteria 956
74 Ga0265332_10104569 3300031238 Bacteria 1194
75 Ga0265320_10049914 3300031240 Bacteria 2036
76 Ga0265320_10152726 3300031240 Bacteria 1042
77 Ga0265340_10028745 3300031247 Bacteria 2795
78 Ga0265331_10060341 3300031250 Bacteria 1792
79 Ga0265327_10024454 3300031251 Unclassified 3549
80 Ga0265316_10107909 3300031344 Bacteria 2111
81 Ga0316575_10000698 3300031665 Bacteria 10019
82 Ga0316575_10009283 3300031665 Unclassified 3600
83 Ga0316579_10005017 3300031691 Bacteria 5312
84 Ga0316579_10006081 3300031691 Bacteria 4905
85 Ga0316579_10061576 3300031691 Unclassified 1767
86 Ga0316579_10102459 3300031691 Bacteria 1371
87 Ga0316579_10152570 3300031691 Unclassified 1115
88 Ga0316576_10141473 3300031727 Bacteria 1812
89 Ga0316576_10145024 3300031727 Bacteria 1788
90 Ga0316578_10012691 3300031728 Bacteria 4446
91 Ga0316578_10023336 3300031728 Bacteria 3461
92 Ga0316578_10026560 3300031728 Unclassified 3267
93 Ga0316578_10143136 3300031728 Bacteria 1440
94 Ga0316577_10001756 3300031733 Bacteria 10449
95 Ga0316577_10002645 3300031733 Bacteria 8897
96 Ga0316577_10006405 3300031733 Bacteria 6215
97 Ga0316577_10007031 3300031733 Bacteria 5983
98 Ga0316577_10008213 3300031733 Bacteria 5589
99 Ga0316577_10017356 3300031733 Bacteria 3972
100 Ga0316577_10031102 3300031733 Unclassified 2982
101 Ga0316577_10057954 3300031733 Unclassified 2162
102 Ga0307413_10276319 3300031824 Bacteria 1261
103 Ga0307407_10075169 3300031903 Unclassified 2024
104 Ga0307415_100443340 3300032126 Bacteria 1120
105 Ga0316585_10002743 3300032137 Bacteria 4780
106 Ga0316574_0012601 3300035398 Unclassified 4840
107 Ga0316574_0026214 3300035398 Unclassified 3504
108 Ga0316574_0065886 3300035398 Bacteria 2281
109 Ga0316582_0004017 3300036647 Bacteria 7352
110 Ga0316582_0004733 3300036647 Bacteria 6928
111 Ga0316582_0007719 3300036647 Bacteria 5744
112 Ga0316582_0008375 3300036647 Bacteria 5555
113 Ga0316582_0033789 3300036647 Bacteria 3144
114 Ga0316582_0072927 3300036647 Bacteria 2227
115 Ga0316582_0449759 3300036647 Bacteria 888
116 Ga0316582_0505889 3300036647 Unclassified 832
117 Ga0316584_0000444 3300036712 Bacteria 21469
118 Ga0316584_0004601 3300036712 Bacteria 9145
119 Ga0316584_0015331 3300036712 Bacteria 5480
120 Ga0316584_0025891 3300036712 Unclassified 4305
121 Ga0316584_0032691 3300036712 Unclassified 3851
122 Ga0316584_0061621 3300036712 Bacteria 2809
123 Ga0316584_0067148 3300036712 Bacteria 2688
124 Ga0316584_0068993 3300036712 Unclassified 2650
125 Ga0395905_0006727 3300037471 Bacteria 11510
126 Ga0316581_0008674 3300037588 Bacteria 2775
127 Ga0316581_0066990 3300037588 Bacteria 1102
128 Ga0316581_0142824 3300037588 Bacteria 738
129 Ga0400484_02018 3300038725 Bacteria 1768
130 Ga0400490_55933 3300038726 Unclassified 1921
131 Ga0400489_51469 3300039093 Bacteria 2419
132 Ga0436361_0806160 3300039447 Bacteria 6622
133 Ga0451577_0000523 3300042876 Bacteria 63915
134 Ga0451577_0053702 3300042876 Bacteria 3596
135 Ga0451577_0100391 3300042876 Bacteria 2585
136 Ga0451577_0181237 3300042876 Unclassified 1899
137 Ga0451577_0202964 3300042876 Bacteria 1790
138 Ga0451577_0297930 3300042876 Bacteria 1461
139 Ga0451577_0498804 3300042876 Unclassified 1105
140 Ga0453683_0002551 3300044673 Bacteria 14041
141 Ga0453683_0026785 3300044673 Unclassified 3660
142 Ga0453683_0055079 3300044673 Unclassified 2489
143 Ga0453683_0164858 3300044673 Bacteria 1402
144 Ga0453683_0232475 3300044673 Unclassified 1173
145 Ga0453683_0332044 3300044673 Bacteria 975
146 Ga0453684_0000044 3300044712 Bacteria 585643
147 Ga0453684_0000055 3300044712 Bacteria 532014
148 Ga0453684_0000528 3300044712 Bacteria 146005
149 Ga0453684_0000720 3300044712 Bacteria 116865
150 Ga0453684_0000951 3300044712 Bacteria 95417
151 Ga0453684_0002233 3300044712 Bacteria 48026
152 Ga0453684_0002344 3300044712 Bacteria 46315
153 Ga0453684_0003033 3300044712 Bacteria 39050
154 Ga0453684_0005126 3300044712 Bacteria 26372
155 Ga0453684_0006211 3300044712 Bacteria 22912
156 Ga0453684_0017849 3300044712 Bacteria 10951
157 Ga0453684_0122123 3300044712 Bacteria 3143
158 Ga0453684_0160144 3300044712 Bacteria 2663
159 Ga0453684_0212464 3300044712 Bacteria 2248
160 Ga0453684_0264769 3300044712 Unclassified 1967
161 Ga0453684_0356237 3300044712 Bacteria 1648
162 Ga0453684_0373819 3300044712 Bacteria 1602
163 Ga0453684_0380124 3300044712 Bacteria 1586
164 Ga0453684_0438601 3300044712 Bacteria 1456
165 Ga0453684_0859191 3300044712 Unclassified 974
166 Ga0453684_0885526 3300044712 Unclassified 957
167 Ga0451576_0000009 3300045051 Bacteria 712666
168 Ga0451576_0005416 3300045051 Bacteria 16025
169 Ga0451576_0010527 3300045051 Bacteria 10600
170 Ga0451576_0012761 3300045051 Bacteria 9429
171 Ga0451576_0172990 3300045051 Bacteria 2254
172 Ga0451576_0237294 3300045051 Bacteria 1904
173 Ga0451576_0487333 3300045051 Unclassified 1295
174 Ga0501036_0652648 3300049572 Bacteria 871
175 Ga0501040_0051814 3300049576 Bacteria 2808
176 Ga0501071_0067516 3300049587 Unclassified 2601
177 Ga0501071_0230466 3300049587 Bacteria 1395
178 Ga0501072_0124345 3300049588 Unclassified 2055
179 Ga0501073_0004329 3300049589 Bacteria 10656
180 Ga0501073_0060586 3300049589 Bacteria 2641
181 Ga0501073_0092953 3300049589 Bacteria 2096
182 Ga0501073_0164591 3300049589 Bacteria 1536
183 Ga0501075_0518485 3300049591 Bacteria 910
184 Ga0501076_0071569 3300049592 Unclassified 2774
185 Ga0501076_0386792 3300049592 Bacteria 1150
186 nmdc:mga05p37_104974_c1 3300050507 Bacteria 3476
187 nmdc:mga05p37_14603_c1 3300050507 Bacteria 2968
188 nmdc:mga05p37_160546_c1 3300050507 Bacteria 2746
189 nmdc:mga05p37_190203_c1 3300050507 Bacteria 2493
190 nmdc:mga05p37_210652_c1 3300050507 Bacteria 2350
191 nmdc:mga05p37_21263_c1 3300050507 Bacteria 7854
192 nmdc:mga05p37_230804_c1 3300050507 Bacteria 2230
193 nmdc:mga05p37_45394_c1 3300050507 Bacteria 5404
194 nmdc:mga05p37_772465_c1 3300050507 Unclassified 1055
195 nmdc:mga09592_274723_c1 3300050508 Bacteria 1462
196 nmdc:mga09592_4331_c1 3300050508 Bacteria 11472
197 nmdc:mga09592_67324_c1 3300050508 Bacteria 3037
198 nmdc:mga06r32_168796_c1 3300050510 Bacteria 2171
199 nmdc:mga0a205_151377_c1 3300050515 Bacteria 2219
200 nmdc:mga0a205_24153_c1 3300050515 Bacteria 5773
201 Ga0501084_0024453 3300054114 Bacteria 5039
202 Ga0501082_0441615 3300060353 Bacteria 1137
203 Ga0501082_0778734 3300060353 Unclassified 837
204 2928515598 2928515477 Bacteria 4448421
205 Ga0070699_100026066
206 SwRhRL2b_contig_1913544
207 JGI25406J46586_10000640
208 Ga0065704_10070377
209 Ga0065712_10258724
210 Ga0065707_10000768
211 Ga0065707_10003492
212 Ga0065707_10081987
213 Ga0065707_10083293
214 Ga0070709_10302968
215 Ga0070694_100062091
216 Ga0070707_100147727
217 Ga0070698_100050908
218 Ga0070698_100247260
219 Ga0070698_100533290
220 Ga0070699_100001469
221 Ga0070699_100098684
222 Ga0070699_100146658
223 Ga0070697_100530356
224 Ga0070696_100151254
225 Ga0070704_100105364
226 Ga0070704_100128875
227 Ga0068857_100097389
228 Ga0068857_100438472
229 Ga0068859_100054961
230 Ga0068859_100248311
231 Ga0068861_100419478
232 Ga0068862_100048496
233 Ga0068862_100062485
234 Ga0068862_100117606
235 Ga0081539_10003111
236 Ga0081539_10013995
237 Ga0075430_100149003
238 Ga0075431_100072063
239 Ga0075433_10220276
240 Ga0075429_100005207
241 Ga0075429_100043235
242 Ga0075429_100070321
243 Ga0075429_100519987
244 Ga0097620_100054960
245 Ga0097620_100248294
246 Ga0105240_10471736
247 Ga0114129_10002036
248 Ga0114129_10010730
249 Ga0114129_10013560
250 Ga0114129_10020412
251 Ga0114129_10115319
252 Ga0114129_10232173
253 Ga0114129_10851744
254 Ga0105243_10036292
255 Ga0105243_10097667
256 Ga0105241_10528563
257 Ga0105237_10201844
258 Ga0105249_10010673
259 Ga0105249_10168448
260 Ga0105249_10188987
261 Ga0105246_10145815
262 Ga0157380_10069859
263 Ga0213872_10007434
264 Ga0207684_10457684
265 Ga0207646_10112815
266 Ga0207681_10149465
267 Ga0207709_10068446
268 Ga0207670_10060583
269 Ga0207708_10371697
270 Ga0207676_10137939
271 Ga0207674_10063762
272 Ga0268265_10023275
273 Ga0268265_10111737
274 Ga0268265_10253846
275 Ga0265334_10022282
276 Ga0265318_10008902
277 Ga0265330_10160094
278 Ga0265332_10104569
279 Ga0265320_10049914
280 Ga0265320_10152726
281 Ga0265340_10028745
282 Ga0265331_10060341
283 Ga0265327_10024454
284 Ga0265316_10107909
285 Ga0316575_10000698
286 Ga0316575_10009283
287 Ga0316579_10005017
288 Ga0316579_10006081
289 Ga0316579_10061576
290 Ga0316579_10102459
291 Ga0316579_10152570
292 Ga0316576_10141473
293 Ga0316576_10145024
294 Ga0316578_10012691
295 Ga0316578_10023336
296 Ga0316578_10026560
297 Ga0316578_10143136
298 Ga0316577_10001756
299 Ga0316577_10002645
300 Ga0316577_10006405
301 Ga0316577_10007031
302 Ga0316577_10008213
303 Ga0316577_10017356
304 Ga0316577_10031102
305 Ga0316577_10057954
306 Ga0307413_10276319
307 Ga0307407_10075169
308 Ga0307415_100443340
309 Ga0316585_10002743
310 Ga0316574_0012601
311 Ga0316574_0026214
312 Ga0316574_0065886
313 Ga0316582_0004017
314 Ga0316582_0004733
315 Ga0316582_0007719
316 Ga0316582_0008375
317 Ga0316582_0033789
318 Ga0316582_0072927
319 Ga0316582_0449759
320 Ga0316582_0505889
321 Ga0316584_0000444
322 Ga0316584_0004601
323 Ga0316584_0015331
324 Ga0316584_0025891
325 Ga0316584_0032691
326 Ga0316584_0061621
327 Ga0316584_0067148
328 Ga0316584_0068993
329 Ga0395905_0006727
330 Ga0316581_0008674
331 Ga0316581_0066990
332 Ga0316581_0142824
333 Ga0400484_02018
334 Ga0400490_55933
335 Ga0400489_51469
336 Ga0436361_0806160
337 Ga0451577_0000523
338 Ga0451577_0053702
339 Ga0451577_0100391
340 Ga0451577_0181237
341 Ga0451577_0202964
342 Ga0451577_0297930
343 Ga0451577_0498804
344 Ga0453683_0002551
345 Ga0453683_0026785
346 Ga0453683_0055079
347 Ga0453683_0164858
348 Ga0453683_0232475
349 Ga0453683_0332044
350 Ga0453684_0000044
351 Ga0453684_0000055
352 Ga0453684_0000528
353 Ga0453684_0000720
354 Ga0453684_0000951
355 Ga0453684_0002233
356 Ga0453684_0002344
357 Ga0453684_0003033
358 Ga0453684_0005126
359 Ga0453684_0006211
360 Ga0453684_0017849
361 Ga0453684_0122123
362 Ga0453684_0160144
363 Ga0453684_0212464
364 Ga0453684_0264769
365 Ga0453684_0356237
366 Ga0453684_0373819
367 Ga0453684_0380124
368 Ga0453684_0438601
369 Ga0453684_0859191
370 Ga0453684_0885526
371 Ga0451576_0000009
372 Ga0451576_0005416
373 Ga0451576_0010527
374 Ga0451576_0012761
375 Ga0451576_0172990
376 Ga0451576_0237294
377 Ga0451576_0487333
378 Ga0501036_0652648
379 Ga0501040_0051814
380 Ga0501071_0067516
381 Ga0501071_0230466
382 Ga0501072_0124345
383 Ga0501073_0004329
384 Ga0501073_0060586
385 Ga0501073_0092953
386 Ga0501073_0164591
387 Ga0501075_0518485
388 Ga0501076_0071569
389 Ga0501076_0386792
390 nmdc:mga05p37_104974_c1
391 nmdc:mga05p37_14603_c1
392 nmdc:mga05p37_160546_c1
393 nmdc:mga05p37_190203_c1
394 nmdc:mga05p37_210652_c1
395 nmdc:mga05p37_21263_c1
396 nmdc:mga05p37_230804_c1
397 nmdc:mga05p37_45394_c1
398 nmdc:mga05p37_772465_c1
399 nmdc:mga09592_274723_c1
400 nmdc:mga09592_4331_c1
401 nmdc:mga09592_67324_c1
402 nmdc:mga06r32_168796_c1
403 nmdc:mga0a205_151377_c1
404 nmdc:mga0a205_24153_c1
405 Ga0501084_0024453
406 Ga0501082_0441615
407 Ga0501082_0778734
408 2928515598

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

39

267

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
7f8e-assembly3.cif.gz_C crystal structure of yggs from fusobacterium nucleatum 0.9394 7 235
6kzw-assembly2.cif.gz_B crystal structure of yggs family pyridoxal phosphate-dependent enzyme pipy from fusobacterium nucleatum 0.9392 7 236
7ygf-assembly3.cif.gz_C crystal structure of yggs from fusobacterium nucleatum 0.9391 7 235
3sy1-assembly1.cif.gz_A crystal structure of engineered protein. northeast structural genomics consortium target or70 0.9324 7 238
7ubp-assembly1.cif.gz_A the crystal structure of the k36a/k137a double mutant of e. coli yggs in complex with plp 0.9322 8 238
ID Description Score Start End Superfamily
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9318 8 238 3.20.20.10
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9239 8 238 3.20.20.10
af_Q2FZ87_1_222_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.922 9 240 3.20.20.10
3r79B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9159 8 246 3.20.20.10
af_Q2FZ87_1_222_3.20.20.10 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.914 9 240 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A2M7B543-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9933 2 240 GO:0030170
AF-A0A419EA95-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9914 1 241 GO:0030170
AF-A0A7C7RPQ6-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9884 3 240 GO:0030170
AF-A0A1F8SN01-F1-model_v4 YggS family pyridoxal phosphate enzyme 0.9883 90 240 GO:0030170
AF-A0A1F8TTV0-F1-model_v4 YggS family pyridoxal phosphate enzyme 0.9875 24 242 GO:0030170

Map