F312866

General Info

Members Datasets Scaffolds Average Seq Length
204 66 408 462

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0000320|Ga0451576_0000320_38103_39578
Length 491
Sequence MVARPYYSPSSGYIQQQEEKTMDQSNRYANLSLKEADLIAGGKHLLVAYKLIPAKGYGFLEVAAHVAAESSTGTNVEVSTTDDFTRGVDALVYEVDETAFGDDPVKGGGLFKVAYPVELFDPNLTDGTFNISHMWSLILGNNQGMGDHQGLRMLDFLVPECMMKHFDGPSANITNLWKVLGRSETDGGYIAGTIIKPKLGLRPEPFAKACYDFWLGGDFIKNDEPQANQPFCPMEVVMPKVAEAMDRAQQATGQAKLFSANITADYYKEMIHRGDYVLNTFAKYNSASHVAFLVDGFVTGPAGVTTARREFPDTFLHFHRAGHGAVTSYKSPMGMDPLCYMKMVRLMGASGMHTGTMGYGKMEGHGKETVLAYMLERDECQGPYFYQKWYGMKATTPIISGGMNALRLPGFFKNLGHGNVINTCGGGSFGHIDSPAAGGISLGQAYECWKSGADPIEYAKTHKEFARAFESFPKDGDKLFPGWREKLGVHK

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
3 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
4 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
5 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
6 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
7 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
8 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
9 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
10 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
11 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
12 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
13 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
14 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
15 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
16 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
17 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
18 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
19 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
20 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
21 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
22 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
23 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
24 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
25 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
26 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
27 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
28 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
29 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
30 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
31 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
32 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
33 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
34 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
35 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
36 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
37 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
38 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
39 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
40 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
41 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
42 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
43 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
44 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
45 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
46 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
47 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
48 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
49 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
50 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
51 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
52 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
55 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
56 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
57 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
58 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
59 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
60 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
61 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
62 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
64 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
65 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
66 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.25
Metatranscriptomes 12.25
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.94
Rhizosphere 82.35
Stem 0
Stem Tuber 0
Unclassified 0.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0000320 3300045051 Bacteria 116612
2 Ga0265336_10000081 3300028666 Bacteria 76621
3 Ga0265324_10000018 3300029957 Bacteria 184238
4 Ga0265324_10000612 3300029957 Bacteria 24383
5 Ga0265330_10016027 3300031235 Bacteria 3463
6 Ga0265332_10002749 3300031238 Bacteria 8772
7 Ga0265328_10000953 3300031239 Bacteria 13269
8 Ga0265320_10024631 3300031240 Bacteria 3180
9 Ga0265325_10000035 3300031241 Bacteria 99051
10 Ga0265325_10001853 3300031241 Bacteria 14598
11 Ga0265331_10000138 3300031250 Bacteria 96032
12 Ga0265331_10005955 3300031250 Bacteria 7279
13 Ga0265331_10021028 3300031250 Bacteria 3342
14 Ga0265331_10045458 3300031250 Bacteria 2120
15 Ga0265327_10000294 3300031251 Bacteria 96710
16 Ga0265327_10000299 3300031251 Bacteria 96033
17 Ga0265327_10000308 3300031251 Bacteria 94808
18 Ga0265327_10000438 3300031251 Bacteria 75623
19 Ga0265327_10003539 3300031251 Bacteria 14808
20 Ga0265327_10008282 3300031251 Bacteria 7785
21 Ga0265327_10009336 3300031251 Bacteria 7094
22 Ga0265327_10009828 3300031251 Bacteria 6834
23 Ga0265327_10038079 3300031251 Bacteria 2627
24 Ga0265316_10027481 3300031344 Bacteria 4710
25 Ga0265316_10040827 3300031344 Bacteria 3718
26 Ga0265313_10001342 3300031595 Bacteria 23180
27 Ga0316575_10000429 3300031665 Bacteria 11981
28 Ga0316575_10007525 3300031665 Bacteria 3943
29 Ga0316575_10012634 3300031665 Bacteria 3145
30 Ga0316579_10004579 3300031691 Bacteria 5502
31 Ga0316579_10008057 3300031691 Bacteria 4376
32 Ga0316579_10008715 3300031691 Bacteria 4239
33 Ga0265314_10001810 3300031711 Bacteria 23057
34 Ga0265314_10003325 3300031711 Bacteria 15662
35 Ga0265314_10021368 3300031711 Bacteria 4977
36 Ga0265314_10060389 3300031711 Bacteria 2587
37 Ga0316576_10003090 3300031727 Bacteria 9705
38 Ga0316576_10012775 3300031727 Bacteria 5556
39 Ga0316576_10013455 3300031727 Bacteria 5439
40 Ga0316576_10018163 3300031727 Bacteria 4794
41 Ga0316576_10018193 3300031727 Bacteria 4791
42 Ga0316576_10028219 3300031727 Bacteria 3954
43 Ga0316576_10028469 3300031727 Bacteria 3939
44 Ga0316576_10036344 3300031727 Bacteria 3521
45 Ga0316576_10065145 3300031727 Bacteria 2677
46 Ga0316578_10007273 3300031728 Bacteria 5537
47 Ga0316578_10008737 3300031728 Bacteria 5173
48 Ga0316578_10009834 3300031728 Bacteria 4936
49 Ga0316578_10013592 3300031728 Bacteria 4322
50 Ga0316578_10051269 3300031728 Bacteria 2416
51 Ga0316577_10010510 3300031733 Bacteria 5000
52 Ga0316577_10031206 3300031733 Bacteria 2977
53 Ga0316583_10008828 3300032133 Bacteria 3635
54 Ga0316583_10023319 3300032133 Bacteria 2212
55 Ga0316583_10036083 3300032133 Bacteria 1754
56 Ga0316585_10005877 3300032137 Bacteria 3482
57 Ga0316580_10002709 3300032139 Bacteria 4925
58 Ga0316580_10029834 3300032139 Bacteria 1688
59 Ga0316593_10013210 3300032168 Bacteria 2440
60 Ga0316593_10014197 3300032168 Bacteria 2371
61 Ga0316593_10021930 3300032168 Bacteria 2001
62 Ga0316593_10041078 3300032168 Bacteria 1539
63 Ga0316593_10042190 3300032168 Bacteria 1521
64 Ga0316593_10044141 3300032168 Bacteria 1491
65 Ga0316592_1007424 3300033524 Bacteria 2142
66 Ga0316592_1016480 3300033524 Bacteria 1544
67 Ga0316586_1000127 3300033527 Bacteria 5862
68 Ga0316586_1007856 3300033527 Bacteria 1565
69 Ga0316588_1000828 3300033528 Bacteria 4663
70 Ga0316588_1003543 3300033528 Bacteria 2865
71 Ga0316588_1017179 3300033528 Bacteria 1611
72 Ga0316588_1018276 3300033528 Bacteria 1569
73 Ga0316588_1019697 3300033528 Bacteria 1522
74 Ga0316587_1006914 3300033529 Bacteria 1750
75 Ga0316587_1008819 3300033529 Bacteria 1591
76 Ga0316587_1009988 3300033529 Bacteria 1513
77 Ga0316587_1010193 3300033529 Bacteria 1501
78 Ga0316596_1018396 3300033541 Bacteria 1765
79 Ga0316596_1021463 3300033541 Bacteria 1646
80 Ga0316596_1023571 3300033541 Bacteria 1578
81 Ga0316596_1026192 3300033541 Bacteria 1502
82 Ga0316596_1026329 3300033541 Bacteria 1499
83 Ga0316596_1027416 3300033541 Bacteria 1470
84 Ga0373952_0000345 3300035092 Bacteria 7845
85 Ga0316574_0018572 3300035398 Bacteria 4089
86 Ga0316574_0041966 3300035398 Bacteria 2821
87 Ga0316574_0054308 3300035398 Bacteria 2502
88 Ga0316582_0000277 3300036647 Bacteria 17504
89 Ga0316582_0011276 3300036647 Bacteria 4935
90 Ga0316582_0021281 3300036647 Bacteria 3828
91 Ga0316582_0051500 3300036647 Bacteria 2612
92 Ga0316582_0084942 3300036647 Bacteria 2073
93 Ga0316582_0088624 3300036647 Bacteria 2033
94 Ga0316582_0130664 3300036647 Bacteria 1686
95 Ga0316584_0018993 3300036712 Bacteria 4966
96 Ga0316584_0034745 3300036712 Bacteria 3737
97 Ga0316584_0040177 3300036712 Bacteria 3485
98 Ga0316584_0057015 3300036712 Bacteria 2924
99 Ga0316584_0066964 3300036712 Bacteria 2692
100 Ga0316584_0075268 3300036712 Bacteria 2531
101 Ga0316584_0159763 3300036712 Bacteria 1674
102 Ga0400484_29981 3300038725 Bacteria 23426
103 Ga0400490_16854 3300038726 Bacteria 31241
104 Ga0400490_21081 3300038726 Bacteria 20811
105 Ga0400490_22447 3300038726 Bacteria 76643
106 Ga0400490_41264 3300038726 Bacteria 84677
107 Ga0400490_47449 3300038726 Bacteria 12140
108 Ga0400490_52868 3300038726 Bacteria 2858
109 Ga0400491_05270 3300038727 Bacteria 3900
110 Ga0400491_05325 3300038727 Bacteria 12728
111 Ga0400491_07648 3300038727 Bacteria 1508
112 Ga0400491_29096 3300038727 Bacteria 2691
113 Ga0400485_18296 3300038735 Bacteria 5561
114 Ga0400485_18896 3300038735 Bacteria 72885
115 Ga0400485_21475 3300038735 Bacteria 11807
116 Ga0400488_05005 3300038741 Bacteria 21809
117 Ga0400488_42063 3300038741 Bacteria 26633
118 Ga0400486_00257 3300038742 Bacteria 38956
119 Ga0400486_19622 3300038742 Bacteria 14201
120 Ga0400486_19627 3300038742 Bacteria 369894
121 Ga0400483_064731 3300039062 Bacteria 28227
122 Ga0400483_216060 3300039062 Bacteria 14383
123 Ga0400483_276796 3300039062 Bacteria 19453
124 Ga0400483_287532 3300039062 Bacteria 3884
125 Ga0400483_288143 3300039062 Bacteria 14000
126 Ga0400487_07326 3300039110 Bacteria 47654
127 Ga0400487_32526 3300039110 Bacteria 1885
128 Ga0400487_44329 3300039110 Unclassified 2185
129 Ga0400487_49464 3300039110 Bacteria 37732
130 Ga0400487_56312 3300039110 Bacteria 61240
131 Ga0451577_0000002 3300042876 Bacteria 1731375
132 Ga0451577_0000234 3300042876 Bacteria 110808
133 Ga0451577_0000419 3300042876 Bacteria 76708
134 Ga0451577_0003141 3300042876 Bacteria 18613
135 Ga0451577_0012751 3300042876 Bacteria 7884
136 Ga0451577_0020091 3300042876 Bacteria 6134
137 Ga0451577_0024614 3300042876 Bacteria 5475
138 Ga0451577_0025834 3300042876 Bacteria 5325
139 Ga0451577_0061798 3300042876 Unclassified 3340
140 Ga0451577_0084957 3300042876 Bacteria 2824
141 Ga0453683_0000013 3300044673 Bacteria 371932
142 Ga0453683_0001070 3300044673 Bacteria 25326
143 Ga0453683_0021252 3300044673 Bacteria 4144
144 Ga0453683_0031514 3300044673 Bacteria 3349
145 Ga0453684_0000002 3300044712 Bacteria 1731375
146 Ga0453684_0000005 3300044712 Bacteria 1431632
147 Ga0453684_0000040 3300044712 Bacteria 690210
148 Ga0453684_0000062 3300044712 Bacteria 487590
149 Ga0453684_0000071 3300044712 Bacteria 448904
150 Ga0453684_0000475 3300044712 Bacteria 159174
151 Ga0453684_0000509 3300044712 Bacteria 151228
152 Ga0453684_0000657 3300044712 Bacteria 124222
153 Ga0453684_0000716 3300044712 Bacteria 117287
154 Ga0453684_0001669 3300044712 Bacteria 60118
155 Ga0453684_0002496 3300044712 Bacteria 44445
156 Ga0453684_0003007 3300044712 Bacteria 39220
157 Ga0453684_0007668 3300044712 Bacteria 19743
158 Ga0453684_0008456 3300044712 Bacteria 18426
159 Ga0453684_0016554 3300044712 Bacteria 11515
160 Ga0453684_0020213 3300044712 Bacteria 10066
161 Ga0453684_0111148 3300044712 Bacteria 3329
162 Ga0453684_0129169 3300044712 Bacteria 3034
163 Ga0451576_0000006 3300045051 Bacteria 949698
164 Ga0451576_0000037 3300045051 Bacteria 372173
165 Ga0451576_0000478 3300045051 Bacteria 89734
166 Ga0451576_0000936 3300045051 Bacteria 55015
167 Ga0451576_0002171 3300045051 Bacteria 30352
168 Ga0451576_0002379 3300045051 Bacteria 28340
169 Ga0451576_0002559 3300045051 Bacteria 26842
170 Ga0451576_0003253 3300045051 Bacteria 22534
171 Ga0451576_0003261 3300045051 Bacteria 22522
172 Ga0451576_0004554 3300045051 Bacteria 17941
173 Ga0451576_0007845 3300045051 Bacteria 12650
174 Ga0451576_0008726 3300045051 Bacteria 11860
175 Ga0451576_0072933 3300045051 Bacteria 3572
176 Ga0451576_0077372 3300045051 Bacteria 3462
177 Ga0451576_0106515 3300045051 Bacteria 2917
178 Ga0451576_0118207 3300045051 Bacteria 2760
179 Ga0496104_0000062 3300048907 Bacteria 117255
180 Ga0496104_0004933 3300048907 Bacteria 11641
181 Ga0496105_0000069 3300048908 Bacteria 80917
182 Ga0496105_0024452 3300048908 Bacteria 4907
183 Ga0496110_0005278 3300048913 Bacteria 10114
184 Ga0496113_0009745 3300048916 Bacteria 6313
185 Ga0501037_0054332 3300049573 Bacteria 2929
186 Ga0501038_0043701 3300049574 Bacteria 3895
187 Ga0501039_0002128 3300049575 Bacteria 14660
188 Ga0501040_0008573 3300049576 Bacteria 6636
189 Ga0501041_0000065 3300049577 Bacteria 39736
190 Ga0501042_0097650 3300049578 Bacteria 2111
191 Ga0501043_0108320 3300049579 Bacteria 2182
192 Ga0501046_0061962 3300049580 Bacteria 2923
193 Ga0501068_0045273 3300049584 Bacteria 2651
194 Ga0501071_0004379 3300049587 Bacteria 8958
195 Ga0501072_0018572 3300049588 Bacteria 5359
196 Ga0501075_0003801 3300049591 Bacteria 10156
197 Ga0501080_0007078 3300049742 Bacteria 10132
198 Ga0501081_0000195 3300049743 Bacteria 29451
199 Ga0501280_000048 3300049776 Bacteria 35936
200 Ga0501035_0037950 3300049822 Bacteria 4362
201 Ga0501045_0029934 3300049824 Bacteria 3938
202 Ga0501084_0031722 3300054114 Bacteria 4418
203 Ga0501082_0001248 3300060353 Bacteria 22338
204 2854681307 2854681122 Bacteria 4548679
205 Ga0451576_0000320
206 Ga0265336_10000081
207 Ga0265324_10000018
208 Ga0265324_10000612
209 Ga0265330_10016027
210 Ga0265332_10002749
211 Ga0265328_10000953
212 Ga0265320_10024631
213 Ga0265325_10000035
214 Ga0265325_10001853
215 Ga0265331_10000138
216 Ga0265331_10005955
217 Ga0265331_10021028
218 Ga0265331_10045458
219 Ga0265327_10000294
220 Ga0265327_10000299
221 Ga0265327_10000308
222 Ga0265327_10000438
223 Ga0265327_10003539
224 Ga0265327_10008282
225 Ga0265327_10009336
226 Ga0265327_10009828
227 Ga0265327_10038079
228 Ga0265316_10027481
229 Ga0265316_10040827
230 Ga0265313_10001342
231 Ga0316575_10000429
232 Ga0316575_10007525
233 Ga0316575_10012634
234 Ga0316579_10004579
235 Ga0316579_10008057
236 Ga0316579_10008715
237 Ga0265314_10001810
238 Ga0265314_10003325
239 Ga0265314_10021368
240 Ga0265314_10060389
241 Ga0316576_10003090
242 Ga0316576_10012775
243 Ga0316576_10013455
244 Ga0316576_10018163
245 Ga0316576_10018193
246 Ga0316576_10028219
247 Ga0316576_10028469
248 Ga0316576_10036344
249 Ga0316576_10065145
250 Ga0316578_10007273
251 Ga0316578_10008737
252 Ga0316578_10009834
253 Ga0316578_10013592
254 Ga0316578_10051269
255 Ga0316577_10010510
256 Ga0316577_10031206
257 Ga0316583_10008828
258 Ga0316583_10023319
259 Ga0316583_10036083
260 Ga0316585_10005877
261 Ga0316580_10002709
262 Ga0316580_10029834
263 Ga0316593_10013210
264 Ga0316593_10014197
265 Ga0316593_10021930
266 Ga0316593_10041078
267 Ga0316593_10042190
268 Ga0316593_10044141
269 Ga0316592_1007424
270 Ga0316592_1016480
271 Ga0316586_1000127
272 Ga0316586_1007856
273 Ga0316588_1000828
274 Ga0316588_1003543
275 Ga0316588_1017179
276 Ga0316588_1018276
277 Ga0316588_1019697
278 Ga0316587_1006914
279 Ga0316587_1008819
280 Ga0316587_1009988
281 Ga0316587_1010193
282 Ga0316596_1018396
283 Ga0316596_1021463
284 Ga0316596_1023571
285 Ga0316596_1026192
286 Ga0316596_1026329
287 Ga0316596_1027416
288 Ga0373952_0000345
289 Ga0316574_0018572
290 Ga0316574_0041966
291 Ga0316574_0054308
292 Ga0316582_0000277
293 Ga0316582_0011276
294 Ga0316582_0021281
295 Ga0316582_0051500
296 Ga0316582_0084942
297 Ga0316582_0088624
298 Ga0316582_0130664
299 Ga0316584_0018993
300 Ga0316584_0034745
301 Ga0316584_0040177
302 Ga0316584_0057015
303 Ga0316584_0066964
304 Ga0316584_0075268
305 Ga0316584_0159763
306 Ga0400484_29981
307 Ga0400490_16854
308 Ga0400490_21081
309 Ga0400490_22447
310 Ga0400490_41264
311 Ga0400490_47449
312 Ga0400490_52868
313 Ga0400491_05270
314 Ga0400491_05325
315 Ga0400491_07648
316 Ga0400491_29096
317 Ga0400485_18296
318 Ga0400485_18896
319 Ga0400485_21475
320 Ga0400488_05005
321 Ga0400488_42063
322 Ga0400486_00257
323 Ga0400486_19622
324 Ga0400486_19627
325 Ga0400483_064731
326 Ga0400483_216060
327 Ga0400483_276796
328 Ga0400483_287532
329 Ga0400483_288143
330 Ga0400487_07326
331 Ga0400487_32526
332 Ga0400487_44329
333 Ga0400487_49464
334 Ga0400487_56312
335 Ga0451577_0000002
336 Ga0451577_0000234
337 Ga0451577_0000419
338 Ga0451577_0003141
339 Ga0451577_0012751
340 Ga0451577_0020091
341 Ga0451577_0024614
342 Ga0451577_0025834
343 Ga0451577_0061798
344 Ga0451577_0084957
345 Ga0453683_0000013
346 Ga0453683_0001070
347 Ga0453683_0021252
348 Ga0453683_0031514
349 Ga0453684_0000002
350 Ga0453684_0000005
351 Ga0453684_0000040
352 Ga0453684_0000062
353 Ga0453684_0000071
354 Ga0453684_0000475
355 Ga0453684_0000509
356 Ga0453684_0000657
357 Ga0453684_0000716
358 Ga0453684_0001669
359 Ga0453684_0002496
360 Ga0453684_0003007
361 Ga0453684_0007668
362 Ga0453684_0008456
363 Ga0453684_0016554
364 Ga0453684_0020213
365 Ga0453684_0111148
366 Ga0453684_0129169
367 Ga0451576_0000006
368 Ga0451576_0000037
369 Ga0451576_0000478
370 Ga0451576_0000936
371 Ga0451576_0002171
372 Ga0451576_0002379
373 Ga0451576_0002559
374 Ga0451576_0003253
375 Ga0451576_0003261
376 Ga0451576_0004554
377 Ga0451576_0007845
378 Ga0451576_0008726
379 Ga0451576_0072933
380 Ga0451576_0077372
381 Ga0451576_0106515
382 Ga0451576_0118207
383 Ga0496104_0000062
384 Ga0496104_0004933
385 Ga0496105_0000069
386 Ga0496105_0024452
387 Ga0496110_0005278
388 Ga0496113_0009745
389 Ga0501037_0054332
390 Ga0501038_0043701
391 Ga0501039_0002128
392 Ga0501040_0008573
393 Ga0501041_0000065
394 Ga0501042_0097650
395 Ga0501043_0108320
396 Ga0501046_0061962
397 Ga0501068_0045273
398 Ga0501071_0004379
399 Ga0501072_0018572
400 Ga0501075_0003801
401 Ga0501080_0007078
402 Ga0501081_0000195
403 Ga0501280_000048
404 Ga0501035_0037950
405 Ga0501045_0029934
406 Ga0501084_0031722
407 Ga0501082_0001248
408 2854681307

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00016

RuBisCO_large

Ribulose bisphosphate carboxylase large chain, catalytic domain

172

472

0.98

PF02788

RuBisCO_large_N

Ribulose bisphosphate carboxylase large chain, N-terminal domain

32

162

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5c2c-assembly1.cif.gz_B-2 gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9928 3 447
5c2c-assembly1.cif.gz_B-2 gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9905 3 447
5c2c-assembly1.cif.gz_A gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9901 3 459
7t1j-assembly1.cif.gz_G crystal structure of rubisco from rhodospirillaceae bacterium brh_c57 0.9879 1 452
5c2c-assembly1.cif.gz_A gws1b rubisco: form ii rubisco derived from uncultivated gallionellacea species (unliganded form) 0.9879 3 459
ID Description Score Start End Superfamily
4lf1A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RuBisCO large subunit, N-terminal domain 0.9663 5 136 3.30.70.150
5rubB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.962 138 438 3.20.20.110
5rubB02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.9524 138 438 3.20.20.110
4lf1A01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;RuBisCO large subunit, N-terminal domain 0.9522 5 136 3.30.70.150
5macE02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.939 138 441 3.20.20.110
ID Description Score Start End GO Terms
AF-L0L4Z5-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit form II 0.9996 198 285 GO:0000287
GO:0016984
AF-A0A1B2LQ42-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase 0.9961 215 327 GO:0000287
GO:0016984
AF-A0A1B2LQ31-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase 0.9953 230 327 GO:0000287
GO:0016984
AF-A0A7C3D5F8-F1-model_v4 Ribulose-bisphosphate carboxylase (EC 4.1.1.39) 0.995 206 459 GO:0000287
GO:0016984
AF-E0WHA9-F1-model_v4 Ribulose-1,5-bisphosphate carboxylase/oxygenase form II large subunit 0.9946 209 292 GO:0000287
GO:0016984

Map