F314108

General Info

Members Datasets Scaffolds Average Seq Length
205 152 410 621

Family's Representative Sequence

Representative Sequence 3300037312|Ga0395899_0009380|Ga0395899_0009380_4250_6184
Length 644
Sequence MNDTLLVYYEDELRHLRELGGEFAQAFPKVASRLGLDAFECADPYVERLLEGFSFLAARVRMQMDAQFPRFTQHLAEMIYPGLLAPTPSMTVVQIEPDRTHPALARGIVVPRGTALSSQLDRESTTRCEYRTAHALTLLPLRLMSAAYRGFDCLPHGWMPRLDGTPKAVLTLRFEWGPAAQSTMRLLDRLPLYLRGSEGVAELLHLRMTAHCPAAALRIGEGRTARYVPLATRCVQAKGFDDSEALLPAPSATYRGCRLLREFFAFPERYAFVELSVLDELAAAMREAGDADKIAFEIVLLLDAHDAMLEASVDASSFALHCTPAVNLFPRRADRIAVDDRRFEHHVVIDRTRPLDFEVFAIEGIDGYSAGDAAPQRFAPFYRARDPGEAVRAPGYFQMRRAPRLLSASERMRGARSRYAGTEVFVALVTPDEAPYASDLRQLGADVLCTNRDLPLSMPVGVGATDFTGDGQLQAVEHVRCLAGPTAPRPALAEPANLWRLLDMLSTSRLPLFAGAGFGETLGVAPPPGSDDASALRQWLAALCPADDAVGRHHIASLQTAGAKAITRRLPLPGPVCYGRGLQITLTFDERAQDGARTSLLGTVLAVALAEYMPINQFAETVVCTPARSIVTRYPARAGRCEIL

Samples

Sample ID Description Type Environment
1 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
9 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
12 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
35 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
37 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
40 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
56 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
57 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
58 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
64 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
65 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
66 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
67 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
68 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
71 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
72 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
73 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
74 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
75 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
76 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
77 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
78 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
79 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
80 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
81 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
82 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
83 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
84 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
85 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
86 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
87 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
88 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
89 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
90 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
91 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
92 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
93 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
94 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
95 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
96 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
97 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
98 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
99 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
100 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
103 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
104 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
105 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
106 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
107 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
108 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
109 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
110 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
111 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
112 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
113 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
116 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
117 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
118 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
119 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
120 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
121 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
124 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
133 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
136 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
137 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
138 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
139 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
140 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
141 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
142 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
143 2806310737 Pseudomonas mosselii BS011 Isolate Unclassified
144 2806310745 Pseudomonas mosselii PtA1 Isolate Unclassified
145 2821131069 Duganella sp. 1224 Isolate Unclassified
146 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
147 3007872151 Pseudomonas sp. SWRI51 Isolate Rhizosphere
148 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
149 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified
150 8002392321 Alcaligenes faecalis Mc250 Isolate Rhizosphere
151 8056115690 Pseudomonas muyukensis COW39 Isolate Rhizosphere
152 8056137416 Pseudomonas fakonensis COW40 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.15
Metatranscriptomes 0.49
Isolates 5.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.73
Nodule 0.98
Rhizoplane 0.98
Rhizosphere 70.24
Stem 0
Stem Tuber 0
Unclassified 2.44

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395899_0009380 3300037312 Bacteria 7514
2 JGI24735J21928_10002464 3300002067 Bacteria 6429
3 JGI25151J46595_10002389 3300003187 Bacteria 11371
4 rootH1_10017937 3300003316 Unclassified 2954
5 rootH2_10010338 3300003320 Bacteria 9137
6 rootL2_10007041 3300003322 Unclassified 3784
7 rootL2_10007042 3300003322 Bacteria 30124
8 rootL2_10058672 3300003322 Bacteria 1759
9 Ga0055526_1001191 3300003771 Bacteria 18835
10 Ga0055537_1004645 3300003773 Bacteria 3879
11 Ga0055524_1006169 3300003775 Bacteria 5234
12 Ga0055534_1001153 3300003784 Bacteria 11154
13 Ga0055530_10000037 3300003791 Bacteria 116741
14 Ga0065165_1021988 3300005262 Bacteria 2200
15 Ga0070670_100005770 3300005331 Bacteria 10460
16 Ga0070671_100074145 3300005355 Bacteria 2843
17 Ga0070667_100019325 3300005367 Bacteria 5652
18 Ga0070694_100012071 3300005444 Bacteria 5365
19 Ga0070681_10004052 3300005458 Bacteria 13833
20 Ga0070681_10036345 3300005458 Bacteria 4946
21 Ga0070679_100014071 3300005530 Bacteria 7673
22 Ga0070686_100022039 3300005544 Bacteria 3792
23 Ga0068855_100015262 3300005563 Bacteria 9246
24 Ga0068855_100233411 3300005563 Bacteria 2058
25 Ga0068863_100000024 3300005841 Bacteria 186277
26 Ga0068860_100000529 3300005843 Bacteria 46619
27 Ga0081539_10000007 3300005985 Bacteria 532790
28 Ga0105240_10005419 3300009093 Bacteria 19014
29 Ga0114129_10328072 3300009147 Bacteria 2033
30 Ga0105237_10013334 3300009545 Bacteria 8623
31 Ga0105239_10004753 3300010375 Bacteria 16127
32 Ga0157373_10007719 3300013100 Bacteria 7995
33 Ga0157370_10002384 3300013104 Bacteria 22669
34 Ga0157369_10000666 3300013105 Bacteria 44321
35 Ga0157369_10002234 3300013105 Bacteria 23310
36 Ga0157369_10004016 3300013105 Bacteria 17440
37 Ga0157369_10029131 3300013105 Bacteria 6103
38 Ga0157374_10002645 3300013296 Bacteria 15082
39 Ga0157374_10012859 3300013296 Bacteria 7291
40 Ga0163162_10095966 3300013306 Bacteria 3053
41 Ga0157372_10004855 3300013307 Bacteria 14290
42 Ga0182008_10011844 3300014497 Bacteria 4625
43 Ga0209672_100634 3300025228 Bacteria 18174
44 Ga0209759_1002695 3300025256 Bacteria 7586
45 Ga0209565_1000021 3300025263 Bacteria 406281
46 Ga0209675_1000908 3300025291 Bacteria 18924
47 Ga0209025_1007220 3300025294 Bacteria 8365
48 Ga0209564_1000142 3300025295 Bacteria 178742
49 Ga0209564_1000158 3300025295 Bacteria 164425
50 Ga0209564_1001196 3300025295 Bacteria 29715
51 Ga0209050_1000058 3300025298 Bacteria 325558
52 Ga0209256_1000816 3300025299 Bacteria 39817
53 Ga0209256_1001716 3300025299 Bacteria 21021
54 Ga0207647_10039982 3300025904 Bacteria 2956
55 Ga0207695_10023631 3300025913 Bacteria 6936
56 Ga0207671_10012081 3300025914 Bacteria 6975
57 Ga0207657_10000367 3300025919 Bacteria 47554
58 Ga0207667_10008677 3300025949 Bacteria 12045
59 Ga0207658_10077784 3300025986 Bacteria 2532
60 Ga0207702_10079034 3300026078 Bacteria 2850
61 Ga0207641_10000068 3300026088 Bacteria 155114
62 Ga0209371_1000207 3300027312 Bacteria 83268
63 Ga0268264_10001911 3300028381 Bacteria 18823
64 Ga0265323_10001454 3300028653 Bacteria 11624
65 Ga0307515_10035213 3300028794 Bacteria 8156
66 Ga0307515_10054636 3300028794 Bacteria 5857
67 Ga0265330_10000288 3300031235 Bacteria 36642
68 Ga0265330_10002027 3300031235 Bacteria 11241
69 Ga0265330_10004170 3300031235 Bacteria 7380
70 Ga0265330_10007782 3300031235 Bacteria 5202
71 Ga0265329_10000585 3300031242 Bacteria 18851
72 Ga0265339_10000991 3300031249 Bacteria 21756
73 Ga0265331_10016979 3300031250 Bacteria 3808
74 Ga0265316_10000185 3300031344 Bacteria 71392
75 Ga0265316_10000191 3300031344 Bacteria 71027
76 Ga0265316_10000290 3300031344 Bacteria 56689
77 Ga0265316_10002118 3300031344 Bacteria 20859
78 Ga0265316_10070370 3300031344 Bacteria 2698
79 Ga0307513_10092229 3300031456 Bacteria 3084
80 Ga0307509_10000036 3300031507 Bacteria 190164
81 Ga0307509_10001260 3300031507 Bacteria 42936
82 Ga0307408_100007496 3300031548 Bacteria 7216
83 Ga0316579_10004552 3300031691 Bacteria 5518
84 Ga0316579_10023708 3300031691 Bacteria 2757
85 Ga0265314_10000001 3300031711 Bacteria 3792860
86 Ga0265342_10000976 3300031712 Bacteria 28362
87 Ga0316576_10039760 3300031727 Bacteria 3377
88 Ga0316578_10008134 3300031728 Bacteria 5315
89 Ga0316577_10004296 3300031733 Bacteria 7338
90 Ga0307414_10000055 3300032004 Bacteria 116524
91 Ga0316580_10003867 3300032139 Bacteria 4295
92 Ga0316593_10000100 3300032168 Bacteria 11188
93 Ga0307510_10000003 3300033180 Bacteria 756654
94 Ga0373936_0001627 3300035113 Bacteria 8224
95 Ga0316574_0000694 3300035398 Bacteria 14321
96 Ga0316574_0001014 3300035398 Bacteria 12677
97 Ga0316574_0055707 3300035398 Bacteria 2472
98 Ga0316582_0027814 3300036647 Bacteria 3420
99 Ga0316582_0070637 3300036647 Bacteria 2259
100 Ga0316584_0021367 3300036712 Bacteria 4703
101 Ga0316584_0032152 3300036712 Bacteria 3882
102 Ga0395899_0003894 3300037312 Bacteria 11768
103 Ga0395900_0000077 3300037418 Bacteria 179525
104 Ga0395900_0005034 3300037418 Bacteria 13872
105 Ga0395900_0006992 3300037418 Bacteria 11691
106 Ga0395898_0000883 3300037466 Bacteria 48881
107 Ga0395898_0018238 3300037466 Bacteria 7158
108 Ga0395898_0085064 3300037466 Bacteria 3048
109 Ga0395905_0010529 3300037471 Bacteria 8984
110 Ga0395901_0000309 3300038443 Bacteria 59989
111 Ga0395901_0000530 3300038443 Bacteria 43967
112 Ga0400484_11966 3300038725 Unclassified 2222
113 Ga0400490_47679 3300038726 Bacteria 119204
114 Ga0400485_21149 3300038735 Bacteria 44285
115 Ga0400486_19638 3300038742 Bacteria 39761
116 Ga0400483_075456 3300039062 Bacteria 32523
117 Ga0400483_174450 3300039062 Bacteria 9080
118 Ga0400483_191813 3300039062 Bacteria 6488
119 Ga0400483_240525 3300039062 Bacteria 26340
120 Ga0400487_35380 3300039110 Unclassified 4498
121 Ga0400487_35778 3300039110 Bacteria 3044
122 Ga0400487_64640 3300039110 Bacteria 31253
123 Ga0439448_0000082 3300042005 Bacteria 16729
124 Ga0450900_000155 3300042136 Bacteria 4207
125 Ga0450902_000014 3300042137 Bacteria 16820
126 Ga0450905_000977 3300042142 Bacteria 3578
127 Ga0450901_000136 3300042533 Bacteria 8104
128 Ga0466969_0018981 3300044656 Bacteria 3578
129 Ga0453683_0063955 3300044673 Bacteria 2300
130 Ga0466966_0003215 3300044684 Bacteria 10770
131 Ga0466963_0004198 3300044694 Bacteria 8349
132 Ga0466964_0004526 3300044706 Bacteria 5135
133 Ga0453684_0058447 3300044712 Bacteria 4981
134 Ga0453684_0083905 3300044712 Bacteria 3964
135 Ga0466968_0013000 3300044735 Bacteria 3267
136 Ga0466970_0002856 3300044765 Bacteria 8348
137 Ga0466957_0014087 3300044842 Bacteria 4653
138 Ga0451576_0048689 3300045051 Unclassified 4450
139 Ga0451576_0092505 3300045051 Bacteria 3146
140 Ga0466958_0056171 3300045836 Bacteria 2391
141 Ga0495638_0011523 3300046460 Bacteria 6089
142 Ga0495653_0000005 3300046463 Bacteria 367438
143 Ga0495580_0008469 3300046472 Bacteria 8181
144 Ga0495584_0000105 3300046491 Bacteria 57062
145 Ga0495616_0000191 3300046513 Bacteria 51332
146 Ga0495616_0003074 3300046513 Bacteria 10814
147 Ga0495633_0001521 3300046558 Bacteria 17883
148 Ga0495656_0018678 3300046615 Bacteria 2668
149 Ga0495668_0000028 3300046616 Bacteria 286629
150 Ga0495611_0055731 3300046648 Bacteria 1789
151 Ga0495674_0066790 3300047319 Bacteria 3118
152 Ga0495686_0000080 3300047472 Bacteria 201665
153 Ga0495686_0000337 3300047472 Bacteria 77142
154 Ga0496112_0108813 3300048915 Bacteria 2742
155 Ga0496114_0009502 3300048917 Bacteria 7718
156 Ga0496116_0046657 3300048919 Bacteria 2922
157 Ga0496121_0005176 3300048924 Bacteria 16915
158 Ga0496121_0028864 3300048924 Bacteria 5152
159 Ga0496121_0042578 3300048924 Bacteria 3946
160 Ga0496122_0033383 3300048925 Bacteria 4234
161 Ga0496123_0032287 3300048926 Bacteria 3794
162 Ga0496124_0000894 3300048927 Bacteria 48157
163 Ga0501032_0002974 3300049569 Bacteria 13154
164 Ga0501032_0009021 3300049569 Bacteria 7248
165 Ga0501033_0001594 3300049570 Bacteria 19939
166 Ga0501033_0002957 3300049570 Bacteria 14213
167 Ga0501033_0036047 3300049570 Bacteria 3707
168 Ga0501036_0004807 3300049572 Bacteria 10918
169 Ga0501036_0039814 3300049572 Bacteria 3976
170 Ga0501037_0002776 3300049573 Bacteria 12676
171 Ga0501038_0008444 3300049574 Bacteria 9473
172 Ga0501039_0005521 3300049575 Bacteria 9568
173 Ga0501039_0045481 3300049575 Bacteria 3391
174 Ga0501042_0001122 3300049578 Bacteria 15421
175 Ga0501043_0104779 3300049579 Bacteria 2223
176 Ga0501046_0001218 3300049580 Bacteria 24929
177 Ga0501047_0003767 3300049581 Bacteria 14271
178 Ga0501048_0026889 3300049582 Bacteria 4186
179 Ga0501068_0010069 3300049584 Bacteria 5305
180 Ga0501035_0033580 3300049822 Bacteria 4665
181 Ga0501035_0044868 3300049822 Bacteria 3978
182 Ga0501044_0001834 3300049823 Bacteria 24743
183 Ga0501044_0003774 3300049823 Bacteria 17023
184 Ga0501044_0044071 3300049823 Bacteria 4632
185 Ga0501044_0124877 3300049823 Bacteria 2571
186 Ga0501045_0052659 3300049824 Bacteria 2972
187 Ga0500583_0012148 3300053092 Bacteria 3274
188 Ga0500641_0014337 3300053096 Bacteria 2924
189 Ga0500562_000577 3300053108 Bacteria 8802
190 Ga0500616_0000029 3300053153 Bacteria 428959
191 Ga0500616_0000105 3300053153 Bacteria 157881
192 Ga0590071_000019 3300059421 Bacteria 42395
193 Ga0466962_0002474 3300061719 Bacteria 8753
194 Ga0466962_0011137 3300061719 Bacteria 4328
195 2513954143 2513237150 Bacteria 6553639
196 2807410749 2806310737 Bacteria 5751088
197 2807459090 2806310745 Bacteria 5742165
198 2821132317 2821131069 Bacteria 6108407
199 2857543676 2857542790 Bacteria 5326616
200 3007873386 3007872151 Bacteria 5268868
201 644746932 644736347 Bacteria 6476522
202 8001523629 8001522603 Bacteria 4726425
203 8002395873 8002392321 Bacteria 4159911
204 8056116056 8056115690 Bacteria 5527654
205 8056137693 8056137416 Bacteria 6147080
206 Ga0395899_0009380
207 JGI24735J21928_10002464
208 JGI25151J46595_10002389
209 rootH1_10017937
210 rootH2_10010338
211 rootL2_10007041
212 rootL2_10007042
213 rootL2_10058672
214 Ga0055526_1001191
215 Ga0055537_1004645
216 Ga0055524_1006169
217 Ga0055534_1001153
218 Ga0055530_10000037
219 Ga0065165_1021988
220 Ga0070670_100005770
221 Ga0070671_100074145
222 Ga0070667_100019325
223 Ga0070694_100012071
224 Ga0070681_10004052
225 Ga0070681_10036345
226 Ga0070679_100014071
227 Ga0070686_100022039
228 Ga0068855_100015262
229 Ga0068855_100233411
230 Ga0068863_100000024
231 Ga0068860_100000529
232 Ga0081539_10000007
233 Ga0105240_10005419
234 Ga0114129_10328072
235 Ga0105237_10013334
236 Ga0105239_10004753
237 Ga0157373_10007719
238 Ga0157370_10002384
239 Ga0157369_10000666
240 Ga0157369_10002234
241 Ga0157369_10004016
242 Ga0157369_10029131
243 Ga0157374_10002645
244 Ga0157374_10012859
245 Ga0163162_10095966
246 Ga0157372_10004855
247 Ga0182008_10011844
248 Ga0209672_100634
249 Ga0209759_1002695
250 Ga0209565_1000021
251 Ga0209675_1000908
252 Ga0209025_1007220
253 Ga0209564_1000142
254 Ga0209564_1000158
255 Ga0209564_1001196
256 Ga0209050_1000058
257 Ga0209256_1000816
258 Ga0209256_1001716
259 Ga0207647_10039982
260 Ga0207695_10023631
261 Ga0207671_10012081
262 Ga0207657_10000367
263 Ga0207667_10008677
264 Ga0207658_10077784
265 Ga0207702_10079034
266 Ga0207641_10000068
267 Ga0209371_1000207
268 Ga0268264_10001911
269 Ga0265323_10001454
270 Ga0307515_10035213
271 Ga0307515_10054636
272 Ga0265330_10000288
273 Ga0265330_10002027
274 Ga0265330_10004170
275 Ga0265330_10007782
276 Ga0265329_10000585
277 Ga0265339_10000991
278 Ga0265331_10016979
279 Ga0265316_10000185
280 Ga0265316_10000191
281 Ga0265316_10000290
282 Ga0265316_10002118
283 Ga0265316_10070370
284 Ga0307513_10092229
285 Ga0307509_10000036
286 Ga0307509_10001260
287 Ga0307408_100007496
288 Ga0316579_10004552
289 Ga0316579_10023708
290 Ga0265314_10000001
291 Ga0265342_10000976
292 Ga0316576_10039760
293 Ga0316578_10008134
294 Ga0316577_10004296
295 Ga0307414_10000055
296 Ga0316580_10003867
297 Ga0316593_10000100
298 Ga0307510_10000003
299 Ga0373936_0001627
300 Ga0316574_0000694
301 Ga0316574_0001014
302 Ga0316574_0055707
303 Ga0316582_0027814
304 Ga0316582_0070637
305 Ga0316584_0021367
306 Ga0316584_0032152
307 Ga0395899_0003894
308 Ga0395900_0000077
309 Ga0395900_0005034
310 Ga0395900_0006992
311 Ga0395898_0000883
312 Ga0395898_0018238
313 Ga0395898_0085064
314 Ga0395905_0010529
315 Ga0395901_0000309
316 Ga0395901_0000530
317 Ga0400484_11966
318 Ga0400490_47679
319 Ga0400485_21149
320 Ga0400486_19638
321 Ga0400483_075456
322 Ga0400483_174450
323 Ga0400483_191813
324 Ga0400483_240525
325 Ga0400487_35380
326 Ga0400487_35778
327 Ga0400487_64640
328 Ga0439448_0000082
329 Ga0450900_000155
330 Ga0450902_000014
331 Ga0450905_000977
332 Ga0450901_000136
333 Ga0466969_0018981
334 Ga0453683_0063955
335 Ga0466966_0003215
336 Ga0466963_0004198
337 Ga0466964_0004526
338 Ga0453684_0058447
339 Ga0453684_0083905
340 Ga0466968_0013000
341 Ga0466970_0002856
342 Ga0466957_0014087
343 Ga0451576_0048689
344 Ga0451576_0092505
345 Ga0466958_0056171
346 Ga0495638_0011523
347 Ga0495653_0000005
348 Ga0495580_0008469
349 Ga0495584_0000105
350 Ga0495616_0000191
351 Ga0495616_0003074
352 Ga0495633_0001521
353 Ga0495656_0018678
354 Ga0495668_0000028
355 Ga0495611_0055731
356 Ga0495674_0066790
357 Ga0495686_0000080
358 Ga0495686_0000337
359 Ga0496112_0108813
360 Ga0496114_0009502
361 Ga0496116_0046657
362 Ga0496121_0005176
363 Ga0496121_0028864
364 Ga0496121_0042578
365 Ga0496122_0033383
366 Ga0496123_0032287
367 Ga0496124_0000894
368 Ga0501032_0002974
369 Ga0501032_0009021
370 Ga0501033_0001594
371 Ga0501033_0002957
372 Ga0501033_0036047
373 Ga0501036_0004807
374 Ga0501036_0039814
375 Ga0501037_0002776
376 Ga0501038_0008444
377 Ga0501039_0005521
378 Ga0501039_0045481
379 Ga0501042_0001122
380 Ga0501043_0104779
381 Ga0501046_0001218
382 Ga0501047_0003767
383 Ga0501048_0026889
384 Ga0501068_0010069
385 Ga0501035_0033580
386 Ga0501035_0044868
387 Ga0501044_0001834
388 Ga0501044_0003774
389 Ga0501044_0044071
390 Ga0501044_0124877
391 Ga0501045_0052659
392 Ga0500583_0012148
393 Ga0500641_0014337
394 Ga0500562_000577
395 Ga0500616_0000029
396 Ga0500616_0000105
397 Ga0590071_000019
398 Ga0466962_0002474
399 Ga0466962_0011137
400 2513954143
401 2807410749
402 2807459090
403 2821132317
404 2857543676
405 3007873386
406 644746932
407 8001523629
408 8002395873
409 8056116056
410 8056137693

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05947

T6SS_TssF

Type VI secretion system, TssF

1

641

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6n38-assembly1.cif.gz_H structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7677 46 616
6n38-assembly1.cif.gz_I structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7669 47 614
6n38-assembly1.cif.gz_I structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7629 47 614
6n38-assembly1.cif.gz_H structure of the type vi secretion system tssk-tssf-tssg baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened 0.7625 46 616
6gj1-assembly1.cif.gz_A the baseplate complex from the type vi secretion system 0.5901 6 609
ID Description Score Start End Superfamily
af_Q9Y2E4_1_970_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.5681 532 598 3.40.50.12780
1htyA05 Mainly Beta;Sandwich;Immunoglobulin-like; 0.5372 140 279 2.60.40.1360
af_Q8BQJ6_142_311_2.40.50.1070 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.5325 553 593 2.40.50.1070
af_Q5A0W4_540_618_3.30.70.1350 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Cation efflux protein, cytoplasmic domain 0.5007 525 597 3.30.70.1350
1htyA05 Mainly Beta;Sandwich;Immunoglobulin-like; 0.4985 140 279 2.60.40.1360
ID Description Score Start End GO Terms
AF-A0A4Q5UP35-F1-model_v4 deleted 0.949 520 616
AF-A0A658NKY6-F1-model_v4 Type VI secretion system baseplate subunit TssF 0.9383 530 615
AF-A0A1G3FU97-F1-model_v4 Type VI secretion protein 0.9323 509 616
AF-A0A434GGM1-F1-model_v4 Type VI secretion system baseplate subunit TssF 0.9323 505 616
AF-A0A658NKY6-F1-model_v4 Type VI secretion system baseplate subunit TssF 0.928 530 615

Map