F314513

General Info

Members Datasets Scaffolds Average Seq Length
205 176 410 1113

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2904434214|2904436767
Length 1351
Sequence TRLPTDHTVSPTSAGEAPPPLPHGNHAAASRTVLFAPRIYYVQPSLLGPLHEVKDTLSEEWERTLTRAAAMGFDHLLIAPPFLPGRANDCFITADHHRLCRSLLPGAADRHAADGGDAPDGKTVVPSDVKEPDALDWLAALAKASQAHGLTLLLDVVIDRIGNDAGLYRDHPDWFHPPGAHHGRIDPRHDPRADLIAHANFGHPDTQSPLIDWWIRQLRRYAKAGVAGFRFDGINGIAPHVWRRLAAGVREVYPAQRFLAWTPGATRDALRDLESAAFDGVFSSVRWWDARADWLADEVQALARIAPPIAFPETPFGPRLVSDLPTLASPADHAAITRAYQRSLQIAALTGTGWLMPMGFEFGVDRPLTRTPLTGARSDFKEATRDGEQRTGGAHVGPRIDVREAITALNAYCKPRKSGSAKPRGAAPTGLNAIGADIGPILRSRCALTPLTGPDASATALLRTDCIDPRRARDAILMLVNPDLYRPALADLQRWRDGMPGGFTHYETLPLMRASTSAGGDDANAAPALPSPPADVVTLAPAEVRLLHATRPDAVVLKPDEGAPKTGGTKKAARPSASDRKAALDAIQVPRIAIENVTPNVDDGRFAAKRVVGEPVAIEADVFIDGHDHLAAVVLWREADWATAAVDGPPATNDGWREIPMHASGNDRWHATLPLRRLGTYEFTIEAWRDTFDTLVDHIQKKRAAAQDVTLELEEAAQFFTRILRESGGDAPKAAKDAKTSALLAKEGKTEVVAVDDTKPAKRAKADKSGDTPAKPKSSAASSVGASTTAALPTSGTAGGNARLAHLSDALRTIAAAYQDANAARRLDIVLSTKTAAAVRATGHRDFRVRHPRTLTIQAERRAARFASWYELFPRSASGDMQRHGTFIDVIARLPAIRAMGFDVLYFPPIHPIGRANRKGPNNTLNAGPDDVGSPYAIGAESGGHTAIHPELGTLDDFRTLLHAAREHGLELALDFAIQCSPDHPWLKHHPDWFAWRPDGSLRYAENPPKKYQDIVNPDFYADASMPDLWLELRDAVLFWVREGVDIFRVDNPHTKPFPFWEWMIAEVRRRHPQTLFLSEAFTRPKVMNRLAKVGFSQSYTYFTWRDTKDDLTEYMETLTQTAVREYFRPNFFVNTPDINPRFLQRSGRAGFMIRAALAALLSGVWGVYSGFELCEAAALPDSEEYLDSEKYQIRAWDWERPGNIISEIALLNRIRRANPALQTHLNVTFLPSSNPNVLFFEKATPNRDNVLLIAVSMTPWDIQESAVEIPLWRWGRGDGDVLDAHDLVSGEHFQIQGKHQVVRLDPQVLPFAIRRVSAPGWQPPLSAPPDTGSSTDAAPGGSTHHEGAHG

Samples

Sample ID Description Type Environment
1 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
7 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
8 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
9 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
10 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
11 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
24 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
32 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
33 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
38 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
39 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
41 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
43 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
47 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
54 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
58 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
59 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
60 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
61 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
62 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
63 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
64 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
65 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
66 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
67 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
68 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
69 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
70 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
71 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
72 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
73 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
74 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
75 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
76 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
77 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
78 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
79 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
80 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
81 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
84 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
85 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
86 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
87 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
88 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
89 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
90 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
91 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
92 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
93 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
94 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
95 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
96 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
97 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
98 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
99 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
100 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
101 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
102 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
103 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
107 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
108 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
109 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
110 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
111 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
112 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
113 2904434214 Robbsia andropogonis 1567 Isolate Rhizosphere
114 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
115 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
116 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
117 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
118 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
119 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
120 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
121 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
122 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
123 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
124 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
125 2595698237 Methylobacterium sp. UNCCL125 Isolate Unclassified
126 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
127 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
128 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
129 2600254933 Rhizobium sp. NFR12 Isolate Rhizoplane
130 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
131 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
132 2808606384 Burkholderia sp. SJZ089 Isolate Rhizosphere
133 2808606390 Burkholderia sp. SJZ115 Isolate Rhizosphere
134 2808606391 Burkholderia sp. SJZ091 Isolate Rhizosphere
135 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
136 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
137 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
138 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
139 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
140 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
141 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
142 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
143 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
144 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
145 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
146 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
147 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
148 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
149 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
150 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
151 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
152 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
153 2881927736 Candidimonas sp. SYP-B2681 Isolate Rhizosphere
154 2884811622 Herbaspirillum sp. 3C11 Isolate Unclassified
155 2884836552 Herbaspirillum sp. 3R-11 Isolate Unclassified
156 2884852848 Herbaspirillum sp. 3R11 Isolate Unclassified
157 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
158 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
159 2896154374 Herbaspirillum sp. 3R-3a1 Isolate Nodule
160 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
161 2897803580 Azospirillum doebereinerae GSF71 Isolate Unclassified
162 2902330777 Methylobacterium sp. 2A Isolate Unclassified
163 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
164 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
165 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
166 2928125067 Methylobacterium sp. 1973 Isolate Unclassified
167 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
168 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
169 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
170 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
171 641522639 Methylobacterium sp. 4-46 Isolate Nodule
172 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
173 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
174 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
175 8054002106 Azospirillum lipoferum 59b Isolate Unclassified
176 8055266321 Paraburkholderia rhynchosiae LMG 27174 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 67.8
Metatranscriptomes 0.98
Isolates 31.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.59
Nodule 12.2
Rhizoplane 5.37
Rhizosphere 38.54
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10000164 3300002067 Bacteria 23609
2 JGI25154J39366_1000777 3300002738 Bacteria 14132
3 JGI25151J46595_10000065 3300003187 Bacteria 145136
4 JGI25151J46595_10006298 3300003187 Bacteria 5987
5 JGI25406J46586_10000751 3300003203 Bacteria 15135
6 JGI25153J46596_10005108 3300003215 Bacteria 6928
7 Ga0055533_1000630 3300003756 Bacteria 11912
8 Ga0055526_1000782 3300003771 Bacteria 23711
9 Ga0055537_1001827 3300003773 Bacteria 7700
10 Ga0055536_1000026 3300003781 Bacteria 166220
11 Ga0055534_1000093 3300003784 Bacteria 70047
12 Ga0055534_1000433 3300003784 Bacteria 24921
13 Ga0055541_1000266 3300003841 Bacteria 18339
14 Ga0070680_100007939 3300005336 Bacteria 8097
15 Ga0070714_100000813 3300005435 Bacteria 22044
16 Ga0070714_100013728 3300005435 Bacteria 6495
17 Ga0070698_100016200 3300005471 Bacteria 7870
18 Ga0070679_100019494 3300005530 Bacteria 6596
19 Ga0070697_100010630 3300005536 Bacteria 7181
20 Ga0068855_100000046 3300005563 Bacteria 147225
21 Ga0081539_10000283 3300005985 Bacteria 114603
22 Ga0075365_10006514 3300006038 Bacteria 6430
23 Ga0075364_10000397 3300006051 Bacteria 21744
24 Ga0075430_100023464 3300006846 Bacteria 5252
25 Ga0079104_1000210 3300006946 Bacteria 81817
26 Ga0099826_10000036 3300006948 Bacteria 104982
27 Ga0105251_10000300 3300009011 Bacteria 49582
28 Ga0105240_10000410 3300009093 Bacteria 79815
29 Ga0157370_10000515 3300013104 Bacteria 48256
30 Ga0157370_10023779 3300013104 Bacteria 6079
31 Ga0157369_10001759 3300013105 Bacteria 26245
32 Ga0157374_10026115 3300013296 Bacteria 5252
33 Ga0163162_10004425 3300013306 Bacteria 13527
34 Ga0206353_10907470 3300020082 Bacteria 4965
35 Ga0213872_10003669 3300021361 Bacteria 8410
36 Ga0213875_10000040 3300021388 Bacteria 156362
37 Ga0213875_10000595 3300021388 Bacteria 29244
38 Ga0213875_10001446 3300021388 Bacteria 15389
39 Ga0224712_10000001 3300022467 Bacteria 72814
40 Ga0209784_100562 3300025224 Bacteria 12994
41 Ga0209566_100407 3300025225 Bacteria 34223
42 Ga0209674_100116 3300025226 Bacteria 135937
43 Ga0209646_1000027 3300025246 Bacteria 395141
44 Ga0209646_1000057 3300025246 Bacteria 266384
45 Ga0209026_1001400 3300025250 Bacteria 10736
46 Ga0209148_1000019 3300025254 Bacteria 748518
47 Ga0209759_1000141 3300025256 Bacteria 124528
48 Ga0209565_1000145 3300025263 Bacteria 97893
49 Ga0209675_1000026 3300025291 Bacteria 284716
50 Ga0209675_1000139 3300025291 Bacteria 97978
51 Ga0209676_1000059 3300025292 Bacteria 344882
52 Ga0209676_1007193 3300025292 Bacteria 5305
53 Ga0209025_1000066 3300025294 Bacteria 298742
54 Ga0209025_1000159 3300025294 Bacteria 167081
55 Ga0209025_1000463 3300025294 Bacteria 79362
56 Ga0209564_1000084 3300025295 Bacteria 252729
57 Ga0209564_1000161 3300025295 Bacteria 162489
58 Ga0209564_1000851 3300025295 Bacteria 40736
59 Ga0209758_1000191 3300025297 Bacteria 136984
60 Ga0209256_1000562 3300025299 Bacteria 53066
61 Ga0209256_1001729 3300025299 Bacteria 20927
62 Ga0207713_1000888 3300025735 Bacteria 27155
63 Ga0207705_10000385 3300025909 Bacteria 39464
64 Ga0207695_10002164 3300025913 Bacteria 29697
65 Ga0207664_10000195 3300025929 Bacteria 45391
66 Ga0207667_10000036 3300025949 Bacteria 297966
67 Ga0207667_10001036 3300025949 Bacteria 35365
68 Ga0207667_10030415 3300025949 Bacteria 5842
69 Ga0209281_1000253 3300027111 Bacteria 105600
70 Ga0209282_1000155 3300027666 Bacteria 39904
71 Ga0265338_10000636 3300028800 Bacteria 60768
72 Ga0395905_0011518 3300037471 Bacteria 8545
73 Ga0436364_0266271 3300037853 Bacteria 210347
74 Ga0436364_0576120 3300037853 Bacteria 27783
75 Ga0436364_0668296 3300037853 Bacteria 132076
76 Ga0395901_0000034 3300038443 Bacteria 230365
77 Ga0436361_0032359 3300039447 Bacteria 16252
78 Ga0466966_0000056 3300044684 Bacteria 81439
79 Ga0466961_0000173 3300044693 Bacteria 43874
80 Ga0466970_0003017 3300044765 Bacteria 8160
81 Ga0451576_0000219 3300045051 Bacteria 141949
82 Ga0495603_0002787 3300046455 Bacteria 10309
83 Ga0495638_0022619 3300046460 Bacteria 4125
84 Ga0495580_0003252 3300046472 Bacteria 13889
85 Ga0495596_0000564 3300046500 Bacteria 23183
86 Ga0495607_0000007 3300046501 Bacteria 272517
87 Ga0495606_0006824 3300046507 Bacteria 10422
88 Ga0495652_0022423 3300046529 Bacteria 5602
89 Ga0495654_0000043 3300046530 Bacteria 161913
90 Ga0495665_0001440 3300046531 Bacteria 12738
91 Ga0495645_0000714 3300046543 Bacteria 22824
92 Ga0495667_0020750 3300046559 Bacteria 4433
93 Ga0495634_0002643 3300046642 Bacteria 14731
94 Ga0495625_0001675 3300046660 Bacteria 25868
95 Ga0495623_0017937 3300046679 Bacteria 4573
96 Ga0495646_0002320 3300046680 Bacteria 11650
97 Ga0495624_0031884 3300046690 Bacteria 3422
98 Ga0495670_0024616 3300046691 Bacteria 2976
99 Ga0495581_0010134 3300047315 Bacteria 5454
100 Ga0495604_0005359 3300047317 Bacteria 10167
101 Ga0495604_0005410 3300047317 Bacteria 10129
102 Ga0495687_000121 3300047443 Bacteria 120336
103 Ga0495687_012651 3300047443 Bacteria 4448
104 Ga0495686_0000029 3300047472 Bacteria 369110
105 Ga0495593_0003486 3300047673 Bacteria 9420
106 Ga0495602_0004166 3300048088 Bacteria 15051
107 Ga0495614_0004468 3300048089 Bacteria 6308
108 Ga0496100_0009950 3300048903 Bacteria 5364
109 Ga0496103_0018728 3300048906 Bacteria 4154
110 Ga0496106_0000008 3300048909 Bacteria 248430
111 Ga0496106_0005887 3300048909 Bacteria 9062
112 Ga0496107_0011746 3300048910 Bacteria 6110
113 Ga0496110_0001791 3300048913 Bacteria 15838
114 Ga0496111_0021316 3300048914 Bacteria 4523
115 Ga0496112_0019473 3300048915 Bacteria 6406
116 Ga0496115_0021849 3300048918 Bacteria 4948
117 Ga0496116_0003862 3300048919 Bacteria 14615
118 Ga0496116_0010955 3300048919 Bacteria 7554
119 Ga0496117_0009084 3300048920 Bacteria 9341
120 Ga0496118_0006919 3300048921 Bacteria 12267
121 Ga0496121_0002471 3300048924 Bacteria 28191
122 Ga0496121_0039002 3300048924 Bacteria 4195
123 Ga0496122_0000009 3300048925 Bacteria 584024
124 Ga0496122_0000115 3300048925 Bacteria 183402
125 Ga0496122_0000748 3300048925 Bacteria 63291
126 Ga0496122_0009533 3300048925 Bacteria 10202
127 Ga0496123_0000020 3300048926 Bacteria 388748
128 Ga0496123_0000969 3300048926 Bacteria 44329
129 Ga0496123_0001196 3300048926 Bacteria 38152
130 Ga0496123_0023184 3300048926 Bacteria 4757
131 Ga0496124_0016797 3300048927 Bacteria 6937
132 Ga0496125_0000321 3300048928 Bacteria 93570
133 Ga0501034_0000745 3300049571 Bacteria 49151
134 Ga0501047_0017510 3300049581 Bacteria 6863
135 Ga0501044_0001561 3300049823 Bacteria 26835
136 nmdc:mga00v17_3475_c1 3300050491 Bacteria 8160
137 nmdc:mga0yw44_2938_c1 3300050492 Bacteria 7419
138 nmdc:mga0qj67_25919_c1 3300050509 Bacteria 4535
139 Ga0495619_0016061 3300053085 Bacteria 4740
140 Ga0500618_006572 3300053125 Bacteria 3398
141 Ga0500616_0000777 3300053153 Bacteria 36725
142 2904436767 2904434214 Bacteria 6230908
143 2512035108 2511231221 Bacteria 6846400
144 2513866192 2513237138 Bacteria 7368160
145 2513911682 2513237144 Bacteria 7530820
146 2513927816 2513237146 Bacteria 7166346
147 2513955687 2513237150 Bacteria 6553639
148 2514041887 2513237165 Bacteria 6771773
149 2523102500 2522572158 Bacteria 6514390
150 2545677700 2545555834 Bacteria 8130841
151 2550694316 2548876994 Bacteria 4904866
152 2585994666 2585427633 Bacteria 6413184
153 2585999150 2585427634 Bacteria 6455027
154 2596371130 2595698237 Bacteria 6712432
155 2599101537 2597490356 Bacteria 7030811
156 2599416750 2599185170 Bacteria 7295545
157 2599719377 2599185236 Bacteria 6875203
158 2600374887 2600254933 Bacteria 4750527
159 2738746001 2738541281 Bacteria 5112672
160 2739355231 2738543032 Bacteria 5115625
161 2808973188 2808606384 Bacteria 8474373
162 2809009204 2808606390 Bacteria 8476311
163 2809015079 2808606391 Bacteria 8308166
164 2819614458 2818991449 Bacteria 5518009
165 2819683127 2818991461 Bacteria 7026071
166 2821123821 2821123053 Bacteria 7836056
167 2829750406 2829745981 Bacteria 5406054
168 2838036863 2838035591 Bacteria 7166484
169 2838076058 2838074704 Bacteria 6785777
170 2838662096 2838661181 Bacteria 7385261
171 2838739149 2838736955 Bacteria 5760694
172 2841843047 2841840854 Bacteria 5761912
173 2842142829 2842140634 Bacteria 5759631
174 2842701149 2842698319 Bacteria 5190321
175 2846953739 2846952575 Bacteria 6587527
176 2848860077 2848858292 Bacteria 7391279
177 2854898462 2854896431 Bacteria 5869725
178 2854917762 2854916844 Bacteria 5725939
179 2857531383 2857531043 Bacteria 6754041
180 2857579189 2857576091 Bacteria 5465855
181 2861693222 2861691609 Bacteria 5628931
182 2881929039 2881927736 Bacteria 3993927
183 2884816494 2884811622 Bacteria 5552861
184 2884837757 2884836552 Bacteria 5219991
185 2884854049 2884852848 Bacteria 5221161
186 2887376769 2887375801 Bacteria 5334027
187 2889312361 2889306138 Bacteria 6358934
188 2896154834 2896154374 Bacteria 5221518
189 2896388691 2896384573 Bacteria 7700774
190 2897808913 2897803580 Bacteria 7000062
191 2902334224 2902330777 Bacteria 6395352
192 2902406052 2902405164 Bacteria 6784948
193 2919171874 2919171160 Bacteria 6499771
194 2923561215 2923556063 Bacteria 6793593
195 2928125940 2928125067 Bacteria 5937560
196 2928131470 2928130867 Bacteria 5467269
197 2933019374 2933016740 Bacteria 6355406
198 3003671140 3003665799 Bacteria 7279786
199 3005413697 3005409236 Bacteria 7188837
200 641646889 641522639 Bacteria 7737025
201 643605101 643348564 Bacteria 8839022
202 644751395 644736347 Bacteria 6476522
203 8018151394 8018150411 Bacteria 5549903
204 8054008874 8054002106 Bacteria 7987183
205 8055270996 8055266321 Bacteria 7999742
206 JGI24735J21928_10000164
207 JGI25154J39366_1000777
208 JGI25151J46595_10000065
209 JGI25151J46595_10006298
210 JGI25406J46586_10000751
211 JGI25153J46596_10005108
212 Ga0055533_1000630
213 Ga0055526_1000782
214 Ga0055537_1001827
215 Ga0055536_1000026
216 Ga0055534_1000093
217 Ga0055534_1000433
218 Ga0055541_1000266
219 Ga0070680_100007939
220 Ga0070714_100000813
221 Ga0070714_100013728
222 Ga0070698_100016200
223 Ga0070679_100019494
224 Ga0070697_100010630
225 Ga0068855_100000046
226 Ga0081539_10000283
227 Ga0075365_10006514
228 Ga0075364_10000397
229 Ga0075430_100023464
230 Ga0079104_1000210
231 Ga0099826_10000036
232 Ga0105251_10000300
233 Ga0105240_10000410
234 Ga0157370_10000515
235 Ga0157370_10023779
236 Ga0157369_10001759
237 Ga0157374_10026115
238 Ga0163162_10004425
239 Ga0206353_10907470
240 Ga0213872_10003669
241 Ga0213875_10000040
242 Ga0213875_10000595
243 Ga0213875_10001446
244 Ga0224712_10000001
245 Ga0209784_100562
246 Ga0209566_100407
247 Ga0209674_100116
248 Ga0209646_1000027
249 Ga0209646_1000057
250 Ga0209026_1001400
251 Ga0209148_1000019
252 Ga0209759_1000141
253 Ga0209565_1000145
254 Ga0209675_1000026
255 Ga0209675_1000139
256 Ga0209676_1000059
257 Ga0209676_1007193
258 Ga0209025_1000066
259 Ga0209025_1000159
260 Ga0209025_1000463
261 Ga0209564_1000084
262 Ga0209564_1000161
263 Ga0209564_1000851
264 Ga0209758_1000191
265 Ga0209256_1000562
266 Ga0209256_1001729
267 Ga0207713_1000888
268 Ga0207705_10000385
269 Ga0207695_10002164
270 Ga0207664_10000195
271 Ga0207667_10000036
272 Ga0207667_10001036
273 Ga0207667_10030415
274 Ga0209281_1000253
275 Ga0209282_1000155
276 Ga0265338_10000636
277 Ga0395905_0011518
278 Ga0436364_0266271
279 Ga0436364_0576120
280 Ga0436364_0668296
281 Ga0395901_0000034
282 Ga0436361_0032359
283 Ga0466966_0000056
284 Ga0466961_0000173
285 Ga0466970_0003017
286 Ga0451576_0000219
287 Ga0495603_0002787
288 Ga0495638_0022619
289 Ga0495580_0003252
290 Ga0495596_0000564
291 Ga0495607_0000007
292 Ga0495606_0006824
293 Ga0495652_0022423
294 Ga0495654_0000043
295 Ga0495665_0001440
296 Ga0495645_0000714
297 Ga0495667_0020750
298 Ga0495634_0002643
299 Ga0495625_0001675
300 Ga0495623_0017937
301 Ga0495646_0002320
302 Ga0495624_0031884
303 Ga0495670_0024616
304 Ga0495581_0010134
305 Ga0495604_0005359
306 Ga0495604_0005410
307 Ga0495687_000121
308 Ga0495687_012651
309 Ga0495686_0000029
310 Ga0495593_0003486
311 Ga0495602_0004166
312 Ga0495614_0004468
313 Ga0496100_0009950
314 Ga0496103_0018728
315 Ga0496106_0000008
316 Ga0496106_0005887
317 Ga0496107_0011746
318 Ga0496110_0001791
319 Ga0496111_0021316
320 Ga0496112_0019473
321 Ga0496115_0021849
322 Ga0496116_0003862
323 Ga0496116_0010955
324 Ga0496117_0009084
325 Ga0496118_0006919
326 Ga0496121_0002471
327 Ga0496121_0039002
328 Ga0496122_0000009
329 Ga0496122_0000115
330 Ga0496122_0000748
331 Ga0496122_0009533
332 Ga0496123_0000020
333 Ga0496123_0000969
334 Ga0496123_0001196
335 Ga0496123_0023184
336 Ga0496124_0016797
337 Ga0496125_0000321
338 Ga0501034_0000745
339 Ga0501047_0017510
340 Ga0501044_0001561
341 nmdc:mga00v17_3475_c1
342 nmdc:mga0yw44_2938_c1
343 nmdc:mga0qj67_25919_c1
344 Ga0495619_0016061
345 Ga0500618_006572
346 Ga0500616_0000777
347 2904436767
348 2512035108
349 2513866192
350 2513911682
351 2513927816
352 2513955687
353 2514041887
354 2523102500
355 2545677700
356 2550694316
357 2585994666
358 2585999150
359 2596371130
360 2599101537
361 2599416750
362 2599719377
363 2600374887
364 2738746001
365 2739355231
366 2808973188
367 2809009204
368 2809015079
369 2819614458
370 2819683127
371 2821123821
372 2829750406
373 2838036863
374 2838076058
375 2838662096
376 2838739149
377 2841843047
378 2842142829
379 2842701149
380 2846953739
381 2848860077
382 2854898462
383 2854917762
384 2857531383
385 2857579189
386 2861693222
387 2881929039
388 2884816494
389 2884837757
390 2884854049
391 2887376769
392 2889312361
393 2896154834
394 2896388691
395 2897808913
396 2902334224
397 2902406052
398 2919171874
399 2923561215
400 2928125940
401 2928131470
402 2933019374
403 3003671140
404 3005413697
405 641646889
406 643605101
407 644751395
408 8018151394
409 8054008874
410 8055270996

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21702

GLGE_C

GLGE, C-terminal

1230

1317

0.95

PF11896

GlgE_dom_N_S

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S

590

778

0.84

PF00128

Alpha-amylase

Alpha amylase, catalytic domain

885

1057

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
5cim-assembly1.cif.gz_B structure of mycobacterium thermoresistibile glge in complex with maltose (cocrystallisation with maltose-1-phosphate) at 3.32a resolution 0.8643 457 1108
4u3c-assembly3.cif.gz_E docking site of maltohexaose in the mtb glge 0.8557 456 1108
4u33-assembly2.cif.gz_C structure of mtb glge bound to maltose 0.8556 456 1108
5cgm-assembly1.cif.gz_A structure of mycobacterium thermoresistibile glge in complex with maltose at 1.95a resolution 0.8495 457 1106
5cgm-assembly1.cif.gz_B structure of mycobacterium thermoresistibile glge in complex with maltose at 1.95a resolution 0.8462 457 1106
ID Description Score Start End Superfamily
5cimA03 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9199 650 1009 3.20.20.80
5cimA03 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycosidases 0.9038 650 1009 3.20.20.80
5cgmB01 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9015 457 545 2.60.40.10
3zssA04 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8955 1014 1106 2.60.40.1180
af_P9WQ17_598_701_2.60.40.1180 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8945 1015 1108 2.60.40.1180
ID Description Score Start End GO Terms
AF-A0A534S0U1-F1-model_v4 DUF3416 domain-containing protein 0.9699 457 569 GO:0004553
AF-A0A367M2S2-F1-model_v4 Alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase 0.9669 988 1106 GO:0016740
AF-A0A7C1AYH4-F1-model_v4 DUF3416 domain-containing protein 0.9654 645 1106 GO:0005975
GO:0016740
AF-A0A7C3NTG8-F1-model_v4 DUF3416 domain-containing protein 0.9651 457 555 GO:0004553
AF-A0A258NJK4-F1-model_v4 Alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase 0.9646 932 1107 GO:0016740

Map