F314586

General Info

Members Datasets Scaffolds Average Seq Length
206 138 412 588

Family's Representative Sequence

Representative Sequence 3300002737|JGI25162J39368_1000583|JGI25162J39368_10005836
Length 618
Sequence MLRPGVLGRLLFLVACLLPGAYPGAARATEPGKDETPVQMLDHADRIKTANHDEFLQLLAELDQHANELSPAQQWRLRYLDAWQTAYDGRYDEARPQLNEIVNVSGDPTLQVRATATLVNILGISRNYEDAFTRLSMLIDELPSIRDNEARYQALGEAAQFLARAGQYELASGYAQQIISDAALRDHACQGMYFKLHALYRSNRIKGSDADFDRGIDTCLKGGQALFANAMRADRADFEIKQGHPEDAVALLQSHYGEVRGYRYPALIATFDNLLAQAYWQQGDMTQARQYANTTLAETEHDEYAEPRSLAYQVLYNVENRLGNAQAALEYHEKFMQADKGYLNDLTARALAYQVVKQQLLANKVQVDELNKQNQILQLQRELDRKDMETSRLYITLLITVVASIAFWLLRMKRSQMRFRRLATRDGLTGVHSRQHFVDEATATLRTAARSTRDACLVLLDLDHFKNVNDTHGHVIGDQVLRRAVAACQHHLRRHDIFGRLGGEEFAIYMPDCSASQARERAERIRQAIAAAPLWGETRHVLITASIGVASTDRSGYELRQLMTDADNAVHQAKQAGRNRVVYGQLGDFIVPAEPTDPVAADAATNEPAGRACGANRP

Samples

Sample ID Description Type Environment
1 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
7 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
8 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
11 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
12 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
13 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
14 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
15 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
16 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
17 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
18 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
25 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
26 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
27 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
28 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
29 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
30 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
33 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
34 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
35 3300015687 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Metagenome Rhizosphere
36 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
37 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
42 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
43 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
45 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
46 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
48 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
49 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
60 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
61 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
62 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
63 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
64 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
69 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
70 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
71 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
72 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
73 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
74 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
75 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
76 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
77 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
78 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
79 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
80 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
81 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
82 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
83 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
84 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
85 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
86 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
87 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
88 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
89 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
90 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
91 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
92 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
93 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
94 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
95 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
96 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
97 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
98 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
99 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
100 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
101 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
104 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
109 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
110 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
118 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
119 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
120 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
121 2537561836 Rhodanobacter spathiphylli B39 Isolate Unclassified
122 2593339238 Luteibacter sp. UNCMF366Tsu5.1 Isolate Unclassified
123 2643221577 Rhodanobacter sp. Root627 Isolate Unclassified
124 2643221685 Rhodanobacter sp. Root480 Isolate Unclassified
125 2687453130 Dyella thiooxydans ATSB10 Isolate Unclassified
126 2734482264 Dyella sp. AD052 Isolate Unclassified
127 2738543009 Luteibacter sp. OK325 Isolate Unclassified
128 2739367700 Dyella sp. YR388 Isolate Unclassified
129 2818991440 Luteibacter yeojuensis 583 Isolate Unclassified
130 2842914999 Luteibacter sp. R-72151 Isolate Unclassified
131 2842918807 Luteibacter sp. R-73110 Isolate Unclassified
132 2884338543 Luteibacter pinisoli MAH-14 Isolate Rhizosphere
133 2884411467 Dyella sp. AD56 Isolate Rhizosphere
134 2904463128 Luteibacter yeojuensis 3191 Isolate Unclassified
135 2919085039 Luteibacter sp. 1214 Isolate Unclassified
136 2919404418 Luteibacter sp. 3190 Isolate Unclassified
137 2928963466 Dyella japonica 1073 Isolate Unclassified
138 2941471342 Luteibacter sp. 621 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.81
Metatranscriptomes 0.49
Isolates 9.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.3
Nodule 0
Rhizoplane 2.91
Rhizosphere 52.43
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1000583 3300002737 Bacteria 26722
2 JGI24736J21556_1000438 3300001904 Bacteria 7871
3 JGI24739J22299_10007050 3300001989 Bacteria 4228
4 JGI24735J21928_10002375 3300002067 Bacteria 6553
5 JGI25162J39368_1001151 3300002737 Bacteria 15806
6 JGI25162J39368_1001959 3300002737 Bacteria 9241
7 JGI25157J39369_1000933 3300002741 Bacteria 13828
8 JGI25163J39215_1000158 3300002771 Bacteria 26705
9 JGI25164J39214_1000193 3300002772 Bacteria 52696
10 JGI25164J39214_1000371 3300002772 Bacteria 26722
11 JGI25165J46597_1000700 3300003214 Bacteria 26722
12 rootH1_10039318 3300003316 Bacteria 5299
13 Ga0006562J51391_1059513 3300003578 Bacteria 4540
14 Ga0055533_1000410 3300003756 Bacteria 16685
15 Ga0055525_1000339 3300003759 Bacteria 34333
16 Ga0055527_1000264 3300003760 Bacteria 31695
17 Ga0055535_1000671 3300003761 Bacteria 26722
18 Ga0055535_1001369 3300003761 Bacteria 12765
19 Ga0055542_1000230 3300003762 Bacteria 65902
20 Ga0055542_1000388 3300003762 Bacteria 44329
21 Ga0055542_1000690 3300003762 Bacteria 26722
22 Ga0055542_1001340 3300003762 Bacteria 12765
23 Ga0055529_1000616 3300003763 Bacteria 26722
24 Ga0055529_1001063 3300003763 Bacteria 12733
25 Ga0070666_10000113 3300005335 Bacteria 55648
26 Ga0070689_100001176 3300005340 Bacteria 16566
27 Ga0070663_100005812 3300005455 Bacteria 7370
28 Ga0070681_10088681 3300005458 Bacteria 3045
29 Ga0070685_10005797 3300005466 Bacteria 6277
30 Ga0068864_100052050 3300005618 Bacteria 3529
31 Ga0068860_100072819 3300005843 Bacteria 3266
32 Ga0068860_100072862 3300005843 Bacteria 3265
33 Ga0105247_10001026 3300009101 Bacteria 21055
34 Ga0105238_10003514 3300009551 Bacteria 15609
35 Ga0105239_10026453 3300010375 Bacteria 6385
36 Ga0157370_10096230 3300013104 Bacteria 2778
37 Ga0157369_10007784 3300013105 Bacteria 12328
38 Ga0157378_10015806 3300013297 Bacteria 6609
39 Ga0182008_10011905 3300014497 Bacteria 4610
40 Ga0157379_10005653 3300014968 Bacteria 10743
41 Ga0157376_10021211 3300014969 Bacteria 5044
42 Ga0182006_1000036 3300015261 Bacteria 226098
43 Ga0182006_1010300 3300015261 Bacteria 4162
44 Ga0182005_1001098 3300015265 Bacteria 11318
45 Ga0183368_1002 3300015687 Bacteria 1865598
46 Ga0209760_100438 3300025207 Bacteria 9764
47 Ga0209784_100295 3300025224 Bacteria 27174
48 Ga0209674_100014 3300025226 Bacteria 704989
49 Ga0209674_100458 3300025226 Bacteria 18474
50 Ga0209672_100005 3300025228 Bacteria 1069303
51 Ga0209672_101193 3300025228 Bacteria 10558
52 Ga0209672_102485 3300025228 Bacteria 4474
53 Ga0209563_100087 3300025230 Bacteria 180595
54 Ga0207427_100084 3300025231 Bacteria 142663
55 Ga0207427_100117 3300025231 Bacteria 102251
56 Ga0209437_100037 3300025233 Bacteria 459730
57 Ga0209437_100138 3300025233 Bacteria 172839
58 Ga0209437_100240 3300025233 Bacteria 89740
59 Ga0209437_100835 3300025233 Bacteria 13427
60 Ga0209258_100006 3300025242 Bacteria 1069303
61 Ga0209258_100034 3300025242 Bacteria 437372
62 Ga0209258_100620 3300025242 Bacteria 28259
63 Ga0209646_1000726 3300025246 Bacteria 11634
64 Ga0209026_1000255 3300025250 Bacteria 66879
65 Ga0209026_1002083 3300025250 Bacteria 7866
66 Ga0209026_1002288 3300025250 Bacteria 7315
67 Ga0209148_1000001 3300025254 Bacteria 2545271
68 Ga0209148_1000002 3300025254 Bacteria 2399500
69 Ga0209148_1000012 3300025254 Bacteria 1069303
70 Ga0209148_1000065 3300025254 Bacteria 344489
71 Ga0209148_1002413 3300025254 Bacteria 6488
72 Ga0209759_1000778 3300025256 Bacteria 26737
73 Ga0209759_1001720 3300025256 Bacteria 11307
74 Ga0209759_1002550 3300025256 Bacteria 7908
75 Ga0209233_1000002 3300025261 Bacteria 2501366
76 Ga0209233_1000083 3300025261 Bacteria 336016
77 Ga0209455_1000008 3300025272 Bacteria 1069303
78 Ga0209455_1000054 3300025272 Bacteria 358936
79 Ga0207680_10001357 3300025903 Bacteria 11609
80 Ga0207647_10000015 3300025904 Bacteria 138626
81 Ga0207707_10069824 3300025912 Bacteria 3062
82 Ga0207649_10027337 3300025920 Bacteria 3346
83 Ga0207690_10004901 3300025932 Bacteria 7896
84 Ga0207640_10050978 3300025981 Bacteria 2688
85 Ga0207676_10113984 3300026095 Bacteria 2267
86 Ga0268264_10011630 3300028381 Bacteria 7258
87 Ga0395900_0004802 3300037418 Bacteria 14238
88 Ga0395900_0069687 3300037418 Bacteria 3614
89 Ga0395898_0001528 3300037466 Bacteria 31859
90 Ga0395898_0016999 3300037466 Bacteria 7427
91 Ga0395901_0000604 3300038443 Bacteria 41808
92 Ga0395901_0041636 3300038443 Bacteria 4761
93 Ga0395901_0081386 3300038443 Bacteria 3382
94 Ga0439436_0000001 3300041404 Bacteria 299341
95 Ga0466969_0002573 3300044656 Bacteria 9696
96 Ga0466961_0003571 3300044693 Bacteria 9696
97 Ga0466961_0014740 3300044693 Bacteria 5023
98 Ga0466970_0001435 3300044765 Bacteria 11530
99 Ga0466970_0001786 3300044765 Bacteria 10360
100 Ga0466970_0032581 3300044765 Bacteria 2753
101 Ga0466959_0036129 3300045049 Bacteria 3650
102 Ga0466959_0058730 3300045049 Bacteria 2801
103 Ga0495617_000697 3300046452 Bacteria 16773
104 Ga0495638_0000116 3300046460 Bacteria 128087
105 Ga0495638_0000178 3300046460 Bacteria 98340
106 Ga0495638_0000223 3300046460 Bacteria 78235
107 Ga0495638_0016256 3300046460 Bacteria 4985
108 Ga0495650_0000064 3300046471 Bacteria 275412
109 Ga0495650_0000371 3300046471 Bacteria 78324
110 Ga0495584_0006187 3300046491 Bacteria 6284
111 Ga0495585_0000067 3300046492 Bacteria 107222
112 Ga0495585_0001346 3300046492 Bacteria 19500
113 Ga0495607_0000370 3300046501 Bacteria 46319
114 Ga0495583_0015454 3300046506 Bacteria 4150
115 Ga0495606_0000166 3300046507 Bacteria 116524
116 Ga0495606_0000415 3300046507 Bacteria 71371
117 Ga0495610_0005362 3300046512 Bacteria 9150
118 Ga0495616_0000005 3300046513 Bacteria 260589
119 Ga0495616_0012059 3300046513 Bacteria 4920
120 Ga0495631_0000032 3300046518 Bacteria 85166
121 Ga0495631_0000040 3300046518 Bacteria 79773
122 Ga0495632_0000015 3300046519 Bacteria 237713
123 Ga0495632_0004179 3300046519 Bacteria 9885
124 Ga0495632_0006828 3300046519 Bacteria 7283
125 Ga0495632_0011306 3300046519 Bacteria 5215
126 Ga0495637_0008133 3300046520 Bacteria 5163
127 Ga0495648_0000142 3300046524 Bacteria 85573
128 Ga0495648_0001532 3300046524 Bacteria 22598
129 Ga0495609_0005257 3300046538 Bacteria 6871
130 Ga0495622_0001358 3300046557 Bacteria 12509
131 Ga0495668_0002516 3300046616 Bacteria 14979
132 Ga0495611_0000002 3300046648 Bacteria 705677
133 Ga0495625_0000002 3300046660 Bacteria 813323
134 Ga0495661_0000679 3300046665 Bacteria 33935
135 Ga0495670_0000428 3300046691 Bacteria 20168
136 Ga0495670_0001035 3300046691 Bacteria 13459
137 Ga0495670_0035469 3300046691 Bacteria 2486
138 Ga0495671_0000120 3300046692 Bacteria 71279
139 Ga0495649_0010307 3300046694 Bacteria 5519
140 Ga0495589_0000014 3300046794 Bacteria 246197
141 Ga0495660_0000105 3300046810 Bacteria 90404
142 Ga0495660_0000138 3300046810 Bacteria 79645
143 Ga0495683_0000439 3300047323 Bacteria 32988
144 Ga0495679_000003 3300047446 Bacteria 787868
145 Ga0495673_0000043 3300047469 Bacteria 284984
146 Ga0495673_0000291 3300047469 Bacteria 67241
147 Ga0495673_0000474 3300047469 Bacteria 43418
148 Ga0495686_0000024 3300047472 Bacteria 400343
149 Ga0495686_0000213 3300047472 Bacteria 107285
150 Ga0496106_0000793 3300048909 Bacteria 22858
151 Ga0496113_0005569 3300048916 Bacteria 7869
152 Ga0496115_0000565 3300048918 Bacteria 28778
153 Ga0496115_0001824 3300048918 Bacteria 15239
154 Ga0496115_0011415 3300048918 Bacteria 6660
155 Ga0496115_0029360 3300048918 Bacteria 4318
156 Ga0496117_0039410 3300048920 Bacteria 3488
157 Ga0496118_0001055 3300048921 Bacteria 43004
158 Ga0496118_0001137 3300048921 Bacteria 40981
159 Ga0496119_0001748 3300048922 Bacteria 25329
160 Ga0496120_0000608 3300048923 Bacteria 54347
161 Ga0496121_0000109 3300048924 Bacteria 187307
162 Ga0496121_0000184 3300048924 Bacteria 138791
163 Ga0496121_0000609 3300048924 Bacteria 67016
164 Ga0496122_0079531 3300048925 Bacteria 2290
165 Ga0496123_0020142 3300048926 Bacteria 5230
166 Ga0496123_0032561 3300048926 Bacteria 3771
167 Ga0496123_0038223 3300048926 Bacteria 3377
168 Ga0496124_0061706 3300048927 Bacteria 3141
169 Ga0496125_0039109 3300048928 Bacteria 4091
170 Ga0496126_0002616 3300048929 Bacteria 23990
171 Ga0496126_0010047 3300048929 Bacteria 9987
172 Ga0495678_001321 3300049459 Bacteria 19875
173 Ga0495678_031980 3300049459 Bacteria 2187
174 Ga0495682_0006865 3300049460 Bacteria 4583
175 Ga0501032_0058858 3300049569 Bacteria 2579
176 Ga0501033_0003031 3300049570 Bacteria 13987
177 Ga0501037_0065222 3300049573 Bacteria 2653
178 Ga0501043_0007968 3300049579 Bacteria 8368
179 Ga0501046_0003433 3300049580 Bacteria 14536
180 Ga0501046_0051956 3300049580 Bacteria 3232
181 Ga0501035_0012754 3300049822 Bacteria 7766
182 Ga0501044_0054086 3300049823 Bacteria 4128
183 Ga0500643_000165 3300053087 Bacteria 66133
184 Ga0500555_000227 3300053103 Bacteria 25228
185 Ga0500633_0000169 3300053160 Bacteria 8815
186 Ga0500645_000646 3300053730 Bacteria 22127
187 2538832946 2537561836 Bacteria 3910579
188 2595446225 2593339238 Bacteria 4182970
189 2643894350 2643221577 Bacteria 3710843
190 2643896987 2643221577 Bacteria 3710843
191 2644476553 2643221685 Bacteria 3673288
192 2644479193 2643221685 Bacteria 3673288
193 2687583681 2687453130 Bacteria 4227172
194 2735834976 2734482264 Unclassified 5014763
195 2739227887 2738543009 Bacteria 4944499
196 2739733468 2739367700 Bacteria 4747630
197 2819564676 2818991440 Bacteria 4774720
198 2842916072 2842914999 Bacteria 4419378
199 2842919195 2842918807 Bacteria 4289178
200 2884339168 2884338543 Bacteria 4610696
201 2884412753 2884411467 Bacteria 5246714
202 2904465323 2904463128 Bacteria 4775606
203 2919088579 2919085039 Bacteria 4532964
204 2919405520 2919404418 Bacteria 4232372
205 2928966753 2928963466 Bacteria 5165703
206 2941471898 2941471342 Bacteria 5018624
207 JGI25162J39368_1000583
208 JGI24736J21556_1000438
209 JGI24739J22299_10007050
210 JGI24735J21928_10002375
211 JGI25162J39368_1001151
212 JGI25162J39368_1001959
213 JGI25157J39369_1000933
214 JGI25163J39215_1000158
215 JGI25164J39214_1000193
216 JGI25164J39214_1000371
217 JGI25165J46597_1000700
218 rootH1_10039318
219 Ga0006562J51391_1059513
220 Ga0055533_1000410
221 Ga0055525_1000339
222 Ga0055527_1000264
223 Ga0055535_1000671
224 Ga0055535_1001369
225 Ga0055542_1000230
226 Ga0055542_1000388
227 Ga0055542_1000690
228 Ga0055542_1001340
229 Ga0055529_1000616
230 Ga0055529_1001063
231 Ga0070666_10000113
232 Ga0070689_100001176
233 Ga0070663_100005812
234 Ga0070681_10088681
235 Ga0070685_10005797
236 Ga0068864_100052050
237 Ga0068860_100072819
238 Ga0068860_100072862
239 Ga0105247_10001026
240 Ga0105238_10003514
241 Ga0105239_10026453
242 Ga0157370_10096230
243 Ga0157369_10007784
244 Ga0157378_10015806
245 Ga0182008_10011905
246 Ga0157379_10005653
247 Ga0157376_10021211
248 Ga0182006_1000036
249 Ga0182006_1010300
250 Ga0182005_1001098
251 Ga0183368_1002
252 Ga0209760_100438
253 Ga0209784_100295
254 Ga0209674_100014
255 Ga0209674_100458
256 Ga0209672_100005
257 Ga0209672_101193
258 Ga0209672_102485
259 Ga0209563_100087
260 Ga0207427_100084
261 Ga0207427_100117
262 Ga0209437_100037
263 Ga0209437_100138
264 Ga0209437_100240
265 Ga0209437_100835
266 Ga0209258_100006
267 Ga0209258_100034
268 Ga0209258_100620
269 Ga0209646_1000726
270 Ga0209026_1000255
271 Ga0209026_1002083
272 Ga0209026_1002288
273 Ga0209148_1000001
274 Ga0209148_1000002
275 Ga0209148_1000012
276 Ga0209148_1000065
277 Ga0209148_1002413
278 Ga0209759_1000778
279 Ga0209759_1001720
280 Ga0209759_1002550
281 Ga0209233_1000002
282 Ga0209233_1000083
283 Ga0209455_1000008
284 Ga0209455_1000054
285 Ga0207680_10001357
286 Ga0207647_10000015
287 Ga0207707_10069824
288 Ga0207649_10027337
289 Ga0207690_10004901
290 Ga0207640_10050978
291 Ga0207676_10113984
292 Ga0268264_10011630
293 Ga0395900_0004802
294 Ga0395900_0069687
295 Ga0395898_0001528
296 Ga0395898_0016999
297 Ga0395901_0000604
298 Ga0395901_0041636
299 Ga0395901_0081386
300 Ga0439436_0000001
301 Ga0466969_0002573
302 Ga0466961_0003571
303 Ga0466961_0014740
304 Ga0466970_0001435
305 Ga0466970_0001786
306 Ga0466970_0032581
307 Ga0466959_0036129
308 Ga0466959_0058730
309 Ga0495617_000697
310 Ga0495638_0000116
311 Ga0495638_0000178
312 Ga0495638_0000223
313 Ga0495638_0016256
314 Ga0495650_0000064
315 Ga0495650_0000371
316 Ga0495584_0006187
317 Ga0495585_0000067
318 Ga0495585_0001346
319 Ga0495607_0000370
320 Ga0495583_0015454
321 Ga0495606_0000166
322 Ga0495606_0000415
323 Ga0495610_0005362
324 Ga0495616_0000005
325 Ga0495616_0012059
326 Ga0495631_0000032
327 Ga0495631_0000040
328 Ga0495632_0000015
329 Ga0495632_0004179
330 Ga0495632_0006828
331 Ga0495632_0011306
332 Ga0495637_0008133
333 Ga0495648_0000142
334 Ga0495648_0001532
335 Ga0495609_0005257
336 Ga0495622_0001358
337 Ga0495668_0002516
338 Ga0495611_0000002
339 Ga0495625_0000002
340 Ga0495661_0000679
341 Ga0495670_0000428
342 Ga0495670_0001035
343 Ga0495670_0035469
344 Ga0495671_0000120
345 Ga0495649_0010307
346 Ga0495589_0000014
347 Ga0495660_0000105
348 Ga0495660_0000138
349 Ga0495683_0000439
350 Ga0495679_000003
351 Ga0495673_0000043
352 Ga0495673_0000291
353 Ga0495673_0000474
354 Ga0495686_0000024
355 Ga0495686_0000213
356 Ga0496106_0000793
357 Ga0496113_0005569
358 Ga0496115_0000565
359 Ga0496115_0001824
360 Ga0496115_0011415
361 Ga0496115_0029360
362 Ga0496117_0039410
363 Ga0496118_0001055
364 Ga0496118_0001137
365 Ga0496119_0001748
366 Ga0496120_0000608
367 Ga0496121_0000109
368 Ga0496121_0000184
369 Ga0496121_0000609
370 Ga0496122_0079531
371 Ga0496123_0020142
372 Ga0496123_0032561
373 Ga0496123_0038223
374 Ga0496124_0061706
375 Ga0496125_0039109
376 Ga0496126_0002616
377 Ga0496126_0010047
378 Ga0495678_001321
379 Ga0495678_031980
380 Ga0495682_0006865
381 Ga0501032_0058858
382 Ga0501033_0003031
383 Ga0501037_0065222
384 Ga0501043_0007968
385 Ga0501046_0003433
386 Ga0501046_0051956
387 Ga0501035_0012754
388 Ga0501044_0054086
389 Ga0500643_000165
390 Ga0500555_000227
391 Ga0500633_0000169
392 Ga0500645_000646
393 2538832946
394 2595446225
395 2643894350
396 2643896987
397 2644476553
398 2644479193
399 2687583681
400 2735834976
401 2739227887
402 2739733468
403 2819564676
404 2842916072
405 2842919195
406 2884339168
407 2884412753
408 2904465323
409 2919088579
410 2919405520
411 2928966753
412 2941471898

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

423

580

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ign-assembly1.cif.gz_A crystal structure of the ggdef domain from marinobacter aquaeolei diguanylate cyclase complexed with c-di-gmp - northeast structural genomics consortium target mqr89a 0.9548 409 573
6tts-assembly1.cif.gz_B crystal structure of the ggdef domain of dgcb from caulobacter crescentus in complex with c-di-gmp 0.9509 409 571
7a7e-assembly1.cif.gz_A structure of a delta-n mutant - e232start - of pa1120 (tpbb or yfin) from pseudomonas aeruginosa (pao1) comprising only the ggdef domain 0.9495 413 571
4urs-assembly1.cif.gz_A crystal structure of ggdef domain from t.maritima 0.9489 413 571
6tts-assembly1.cif.gz_A crystal structure of the ggdef domain of dgcb from caulobacter crescentus in complex with c-di-gmp 0.9482 409 571
ID Description Score Start End Superfamily
af_P76330_387_561_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9697 401 570 3.30.70.270
af_Q2G061_179_351_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9618 406 572 3.30.70.270
3ignA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.952 413 573 3.30.70.270
af_P77334_235_407_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9495 410 571 3.30.70.270
4ursA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.9489 413 571 3.30.70.270
ID Description Score Start End GO Terms
AF-A0A0M2UYH0-F1-model_v4 Two-component response regulator 0.9762 398 571 GO:0005886
GO:0043709
GO:0052621
GO:1902201
AF-A0A3M1DA69-F1-model_v4 GGDEF domain-containing protein 0.9762 441 571 GO:0052621
AF-A0A2V8S8M1-F1-model_v4 GGDEF domain-containing protein 0.9697 399 570 GO:0005886
GO:0016491
GO:0043709
GO:0052621
GO:1902201
AF-V4QG84-F1-model_v4 diguanylate cyclase (EC 2.7.7.65) 0.9641 393 571 GO:0052621
AF-A0A537AH88-F1-model_v4 diguanylate cyclase (EC 2.7.7.65) 0.9634 386 571 GO:0005886
GO:0043709
GO:0052621
GO:1902201

Map