F314666

General Info

Members Datasets Scaffolds Average Seq Length
206 158 205 346

Family's Representative Sequence

Representative Sequence 3300005328|Ga0070676_10102752|Ga0070676_101027522
Length 383
Sequence MVNKDLMPQRVDAWIKMGTRRMSTKILLVVASLVLSVLIGLSLARGNRATQPADDKQLLIGLSLDTLKEARWQADREMFVKRATELGARVLDLSANGDDTVQISDVEKLITNGVDVLVIVPHDGRAMAKAVRMAHDAGIPVIAYDRIIRDSDLDLYVSFDNVKVGELQARYLVDHLPTRGKGRIVRLYGAKTDNNALLFKQGQDNVLAPYIERGDIVVVHEDWVEEWKPENAKRIVNAAISAHGDAFDAVLASNDGTAGGAIQALLEEGLAGKKLVTGQDAELVACQRIVNGTQAMTIYKPLKTLARNAAELAVRIAQRKVVVAPQTANNGTIDVPSVLSDVVTVTKDNMVDTVIKDGLHSFDDVYRGVPEAQRPARDRLAGQ

Samples

Sample ID Description Type Environment
1 3006969106 Bacillus sp. FJAT-50079 Isolate Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
19 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
60 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
90 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
91 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
93 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
94 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
95 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
96 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
97 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
98 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
99 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
100 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
101 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
102 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
103 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
104 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
105 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
106 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
107 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
108 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
109 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
110 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
111 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
112 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
113 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
114 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
115 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
116 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
117 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
118 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
119 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
120 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
121 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
122 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
123 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
124 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
125 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
126 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
127 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
128 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
129 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
130 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
140 3300049678 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought Metagenome Rhizosphere
141 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
142 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
146 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
147 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
148 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
149 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
150 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
151 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
152 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
153 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
154 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
155 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
156 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
157 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
158 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.51
Metatranscriptomes 0
Isolates 0.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.43
Nodule 0
Rhizoplane 0.97
Rhizosphere 95.15
Stem 0
Stem Tuber 0
Unclassified 1.46

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10043434 3300003323 Bacteria 8862
2 Ga0070658_10002536 3300005327 Bacteria 15243
3 Ga0070658_10002917 3300005327 Bacteria 14185
4 Ga0070658_10004974 3300005327 Bacteria 10833
5 Ga0070658_10010885 3300005327 Bacteria 7293
6 Ga0070676_10102752 3300005328 Bacteria 1768
7 Ga0070683_100161314 3300005329 Bacteria 2127
8 Ga0070670_100211101 3300005331 Bacteria 1688
9 Ga0070677_10045061 3300005333 Bacteria 1758
10 Ga0068868_100299160 3300005338 Bacteria 1366
11 Ga0070660_100071922 3300005339 Bacteria 2701
12 Ga0070660_100102936 3300005339 Bacteria 2264
13 Ga0070660_100214172 3300005339 Bacteria 1564
14 Ga0070689_100356500 3300005340 Bacteria 1228
15 Ga0070675_100058906 3300005354 Bacteria 3168
16 Ga0070675_100462863 3300005354 Bacteria 1138
17 Ga0070674_100023749 3300005356 Bacteria 3973
18 Ga0070674_100301248 3300005356 Bacteria 1278
19 Ga0070673_100205003 3300005364 Bacteria 1700
20 Ga0070713_100161430 3300005436 Bacteria 2001
21 Ga0070711_100110181 3300005439 Bacteria 2019
22 Ga0070700_100017453 3300005441 Bacteria 4105
23 Ga0070708_100125120 3300005445 Unclassified 2375
24 Ga0070663_100012661 3300005455 Bacteria 5345
25 Ga0070678_100116676 3300005456 Bacteria 2098
26 Ga0070681_10038199 3300005458 Bacteria 4814
27 Ga0068867_100016870 3300005459 Bacteria 5190
28 Ga0070707_100290270 3300005468 Bacteria 1589
29 Ga0070679_100031207 3300005530 Bacteria 5263
30 Ga0070679_100244549 3300005530 Bacteria 1751
31 Ga0070672_100112322 3300005543 Bacteria 2222
32 Ga0070665_100000188 3300005548 Bacteria 110055
33 Ga0068855_100010299 3300005563 Bacteria 11277
34 Ga0068857_100114093 3300005577 Bacteria 2430
35 Ga0068852_100261490 3300005616 Bacteria 1662
36 Ga0068864_100360765 3300005618 Bacteria 1373
37 Ga0068861_100047112 3300005719 Bacteria 3253
38 Ga0068851_10024339 3300005834 Bacteria 2964
39 Ga0068870_10011895 3300005840 Bacteria 4049
40 Ga0068863_100026083 3300005841 Bacteria 5577
41 Ga0068858_100055955 3300005842 Bacteria 3646
42 Ga0068860_100079068 3300005843 Bacteria 3127
43 Ga0068860_100227965 3300005843 Bacteria 1810
44 Ga0068862_100246113 3300005844 Bacteria 1628
45 Ga0070716_100022260 3300006173 Bacteria 3347
46 Ga0070712_100139409 3300006175 Bacteria 1848
47 Ga0075428_100020634 3300006844 Bacteria 7296
48 Ga0075428_100037868 3300006844 Bacteria 5307
49 Ga0075428_100231058 3300006844 Bacteria 1996
50 Ga0075430_100024862 3300006846 Bacteria 5095
51 Ga0075429_100032125 3300006880 Bacteria 4562
52 Ga0075436_100005459 3300006914 Bacteria 8743
53 Ga0075436_100006092 3300006914 Bacteria 8279
54 Ga0099794_10011398 3300007265 Bacteria 3805
55 Ga0099794_10036401 3300007265 Unclassified 2326
56 Ga0099794_10050982 3300007265 Bacteria 1992
57 Ga0105240_10000092 3300009093 Bacteria 182449
58 Ga0111539_10021902 3300009094 Bacteria 7856
59 Ga0105245_10028598 3300009098 Bacteria 4919
60 Ga0114129_10061630 3300009147 Bacteria 5243
61 Ga0105243_10060958 3300009148 Bacteria 3015
62 Ga0105243_10483884 3300009148 Unclassified 1169
63 Ga0105242_10112673 3300009176 Bacteria 2322
64 Ga0105237_10003086 3300009545 Bacteria 20067
65 Ga0105237_10126014 3300009545 Bacteria 2555
66 Ga0105239_10190906 3300010375 Bacteria 2293
67 Ga0157374_10210283 3300013296 Bacteria 1907
68 Ga0157378_10143814 3300013297 Bacteria 2217
69 Ga0163162_10171957 3300013306 Bacteria 2291
70 Ga0157372_10239437 3300013307 Bacteria 2105
71 Ga0157375_10100329 3300013308 Bacteria 2975
72 Ga0157380_10045102 3300014326 Bacteria 3458
73 Ga0163161_10113759 3300017792 Bacteria 2026
74 Ga0213876_10102189 3300021384 Bacteria 1520
75 Ga0209050_1000212 3300025298 Bacteria 129523
76 Ga0207645_10021596 3300025907 Bacteria 4196
77 Ga0207643_10012731 3300025908 Bacteria 4548
78 Ga0207705_10001731 3300025909 Bacteria 17290
79 Ga0207705_10004446 3300025909 Bacteria 10597
80 Ga0207705_10146519 3300025909 Bacteria 1767
81 Ga0207695_10000085 3300025913 Bacteria 279047
82 Ga0207671_10005987 3300025914 Bacteria 11003
83 Ga0207693_10026172 3300025915 Bacteria 4619
84 Ga0207657_10034732 3300025919 Bacteria 4530
85 Ga0207646_10012867 3300025922 Bacteria 8020
86 Ga0207646_10244000 3300025922 Bacteria 1623
87 Ga0207650_10178427 3300025925 Bacteria 1692
88 Ga0207687_10016054 3300025927 Bacteria 4914
89 Ga0207706_10131085 3300025933 Bacteria 2205
90 Ga0207686_10101392 3300025934 Bacteria 1923
91 Ga0207669_10021631 3300025937 Bacteria 3400
92 Ga0207669_10168869 3300025937 Unclassified 1555
93 Ga0207704_10158247 3300025938 Bacteria 1608
94 Ga0207665_10000023 3300025939 Bacteria 104745
95 Ga0207665_10019810 3300025939 Bacteria 4421
96 Ga0207691_10012321 3300025940 Bacteria 8197
97 Ga0207667_10004098 3300025949 Bacteria 17907
98 Ga0207651_10081571 3300025960 Bacteria 2332
99 Ga0207677_10350669 3300026023 Bacteria 1237
100 Ga0207703_10042163 3300026035 Bacteria 3660
101 Ga0207703_10063438 3300026035 Bacteria 3030
102 Ga0207639_10052938 3300026041 Bacteria 3095
103 Ga0207678_10008276 3300026067 Bacteria 9162
104 Ga0207648_10002210 3300026089 Bacteria 21100
105 Ga0207648_10022200 3300026089 Bacteria 5702
106 Ga0207674_10122904 3300026116 Bacteria 2562
107 Ga0207675_100003905 3300026118 Bacteria 14496
108 Ga0207698_10031660 3300026142 Bacteria 3822
109 Ga0209588_1039214 3300027671 Bacteria 1527
110 Ga0209971_1005435 3300027682 Bacteria 3025
111 Ga0209974_10002106 3300027876 Bacteria 7279
112 Ga0207428_10006669 3300027907 Bacteria 10602
113 Ga0268266_10000860 3300028379 Bacteria 39511
114 Ga0265319_1041622 3300028563 Bacteria 1549
115 Ga0265338_10020887 3300028800 Bacteria 6859
116 Ga0265338_10022261 3300028800 Bacteria 6569
117 Ga0265338_10113127 3300028800 Bacteria 2181
118 Ga0265324_10031428 3300029957 Bacteria 1859
119 Ga0265330_10103048 3300031235 Bacteria 1221
120 Ga0265320_10036046 3300031240 Bacteria 2503
121 Ga0265320_10045846 3300031240 Bacteria 2146
122 Ga0265327_10005771 3300031251 Bacteria 10192
123 Ga0307408_100005415 3300031548 Bacteria 8543
124 Ga0307408_100025106 3300031548 Bacteria 4078
125 Ga0265313_10039998 3300031595 Bacteria 2322
126 Ga0265314_10030718 3300031711 Bacteria 3973
127 Ga0265314_10077287 3300031711 Bacteria 2209
128 Ga0307406_10030570 3300031901 Bacteria 3272
129 Ga0307412_10079104 3300031911 Bacteria 2267
130 Ga0307409_100115446 3300031995 Bacteria 2261
131 Ga0307416_100008884 3300032002 Bacteria 6526
132 Ga0307416_100012190 3300032002 Bacteria 5776
133 Ga0307416_100040339 3300032002 Bacteria 3625
134 Ga0307415_100251119 3300032126 Bacteria 1437
135 Ga0373926_0006385 3300035083 Bacteria 3917
136 Ga0373923_0032099 3300035111 Unclassified 2120
137 Ga0373946_0006159 3300035171 Bacteria 4346
138 Ga0373927_0000264 3300035695 Bacteria 41466
139 Ga0373927_0000896 3300035695 Bacteria 22637
140 Ga0373947_0004803 3300035725 Bacteria 7911
141 Ga0373925_0002706 3300037068 Bacteria 14053
142 Ga0373925_0008638 3300037068 Bacteria 7421
143 Ga0373925_0130250 3300037068 Unclassified 1961
144 Ga0395900_0019111 3300037418 Bacteria 6987
145 Ga0395898_0096222 3300037466 Bacteria 2844
146 Ga0395905_0000026 3300037471 Bacteria 315051
147 Ga0436365_1160114 3300039437 Bacteria 5261
148 Ga0439450_017173 3300042008 Bacteria 1505
149 Ga0439458_0007714 3300042157 Bacteria 2397
150 Ga0439464_0003239 3300042439 Bacteria 4096
151 Ga0451577_0000012 3300042876 Bacteria 575467
152 Ga0451577_0011500 3300042876 Bacteria 8364
153 Ga0451577_0019435 3300042876 Bacteria 6248
154 Ga0451577_0123036 3300042876 Bacteria 2324
155 Ga0453683_0000873 3300044673 Bacteria 28991
156 Ga0453684_0000287 3300044712 Bacteria 216926
157 Ga0451576_0012453 3300045051 Bacteria 9552
158 Ga0451576_0023945 3300045051 Bacteria 6600
159 Ga0495651_0022561 3300046462 Bacteria 4893
160 Ga0495630_0015245 3300046517 Bacteria 5608
161 Ga0495643_0000120 3300046522 Bacteria 126112
162 Ga0495586_0050938 3300046535 Bacteria 2240
163 Ga0496105_0119302 3300048908 Bacteria 2176
164 Ga0496107_0109866 3300048910 Bacteria 2026
165 Ga0501299_016567 3300049522 Bacteria 1306
166 Ga0501031_0018362 3300049568 Bacteria 4553
167 Ga0501032_0000742 3300049569 Bacteria 26486
168 Ga0501033_0057172 3300049570 Bacteria 2883
169 Ga0501034_0111928 3300049571 Bacteria 2720
170 Ga0501038_0001870 3300049574 Bacteria 19444
171 Ga0501042_0148226 3300049578 Bacteria 1692
172 Ga0501046_0005695 3300049580 Bacteria 11118
173 Ga0501047_0020229 3300049581 Bacteria 6392
174 Ga0501047_0037427 3300049581 Bacteria 4691
175 Ga0501048_0013159 3300049582 Bacteria 6140
176 Ga0501077_0060968 3300049593 Bacteria 2393
177 Ga0501248_000881 3300049678 Bacteria 1768
178 Ga0501080_0055092 3300049742 Bacteria 3704
179 Ga0501083_0002017 3300049744 Bacteria 13968
180 Ga0501083_0186846 3300049744 Bacteria 1353
181 Ga0501035_0003775 3300049822 Bacteria 14435
182 Ga0501035_0007609 3300049822 Bacteria 10119
183 Ga0501044_0008392 3300049823 Bacteria 11332
184 Ga0501044_0010903 3300049823 Bacteria 9864
185 nmdc:mga05p37_21519_c1 3300050507 Bacteria 7812
186 nmdc:mga09592_10140_c1 3300050508 Bacteria 7666
187 nmdc:mga09592_17784_c1 3300050508 Bacteria 5826
188 nmdc:mga09592_46293_c1 3300050508 Bacteria 3665
189 nmdc:mga0qj67_33120_c1 3300050509 Bacteria 4031
190 nmdc:mga0qj67_93497_c1 3300050509 Bacteria 2418
191 nmdc:mga06r32_1388_c1 3300050510 Bacteria 21877
192 nmdc:mga06r32_7406_c1 3300050510 Bacteria 9871
193 nmdc:mga08y16_21773_c1 3300050511 Bacteria 6764
194 nmdc:mga08x19_16472_c1 3300050514 Bacteria 4508
195 nmdc:mga08x19_196128_c1 3300050514 Bacteria 1383
196 nmdc:mga08x19_3938_c2 3300050514 Bacteria 6286
197 Ga0500555_000552 3300053103 Bacteria 14913
198 Ga0500616_0001095 3300053153 Bacteria 28172
199 Ga0500616_0005156 3300053153 Bacteria 8971
200 Ga0500645_001151 3300053730 Bacteria 14287
201 Ga0590071_000232 3300059421 Bacteria 16359
202 Ga0590074_005562 3300059423 Unclassified 2089
203 Ga0590075_000060 3300059424 Bacteria 27746
204 Ga0501082_0222217 3300060353 Bacteria 1643
205 Ga0530510_0044588 3300061734 Bacteria 3205

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300025933 Ga0207706_10131085 Ga0207706_101310852 274
2 3300009094 Ga0111539_10021902 Ga0111539_100219028 281
3 3300009147 Ga0114129_10061630 Ga0114129_100616302 281
4 3300042008 Ga0439450_017173 Ga0439450_017173_499_1416 281
5 3300042439 Ga0439464_0003239 Ga0439464_0003239_2943_3860 281
6 3300049522 Ga0501299_016567 Ga0501299_016567_59_976 281
7 3300049678 Ga0501248_000881 Ga0501248_000881_650_1567 281
8 3300050507 nmdc:mga05p37_21519_c1 nmdc:mga05p37_21519_c1_5309_6226 281
9 3300050508 nmdc:mga09592_10140_c1 nmdc:mga09592_10140_c1_4939_5856 281
10 3300050508 nmdc:mga09592_46293_c1 nmdc:mga09592_46293_c1_1401_2318 281
11 3300050509 nmdc:mga0qj67_33120_c1 nmdc:mga0qj67_33120_c1_962_1879 281
12 3300050509 nmdc:mga0qj67_93497_c1 nmdc:mga0qj67_93497_c1_1229_2146 281
13 3300050510 nmdc:mga06r32_1388_c1 nmdc:mga06r32_1388_c1_17432_18349 281
14 3300050510 nmdc:mga06r32_7406_c1 nmdc:mga06r32_7406_c1_8594_9511 281
15 3300050511 nmdc:mga08y16_21773_c1 nmdc:mga08y16_21773_c1_5325_6242 281
16 3300005356 Ga0070674_100301248 Ga0070674_1003012481 288
17 3300009093 Ga0105240_10000092 Ga0105240_10000092127 288
18 3300025937 Ga0207669_10168869 Ga0207669_101688692 289
19 3300005354 Ga0070675_100462863 Ga0070675_1004628631 295
20 3300025937 Ga0207669_10021631 Ga0207669_100216312 295
21 3300028563 Ga0265319_1041622 Ga0265319_10416222 299
22 3300049823 Ga0501044_0008392 Ga0501044_0008392_3223_4191 299
23 3300059421 Ga0590071_000232 Ga0590071_000232_205_1251 300
24 3300059423 Ga0590074_005562 Ga0590074_005562_36_1082 300
25 3300059424 Ga0590075_000060 Ga0590075_000060_283_1329 300
26 3300028800 Ga0265338_10113127 Ga0265338_101131271 302
27 3300042157 Ga0439458_0007714 Ga0439458_0007714_97_1119 303
28 3300061734 Ga0530510_0044588 Ga0530510_0044588_1115_2125 304
29 3300049578 Ga0501042_0148226 Ga0501042_0148226_119_1138 305
30 3300007265 Ga0099794_10050982 Ga0099794_100509822 306
31 3300049744 Ga0501083_0002017 Ga0501083_0002017_9756_10757 306
32 3300037068 Ga0373925_0130250 Ga0373925_0130250_646_1665 307
33 3300050514 nmdc:mga08x19_16472_c1 nmdc:mga08x19_16472_c1_1292_2302 307
34 3300031235 Ga0265330_10103048 Ga0265330_101030481 308
35 3300049580 Ga0501046_0005695 Ga0501046_0005695_9885_10880 308
36 3300049581 Ga0501047_0020229 Ga0501047_0020229_2136_3131 308
37 3300049822 Ga0501035_0003775 Ga0501035_0003775_13426_14421 308
38 3300005327 Ga0070658_10004974 Ga0070658_100049742 309
39 3300005339 Ga0070660_100102936 Ga0070660_1001029362 309
40 3300025909 Ga0207705_10004446 Ga0207705_100044466 309
41 3300025919 Ga0207657_10034732 Ga0207657_100347324 309
42 3300044712 Ga0453684_0000287 Ga0453684_0000287_148671_149699 309
43 3300050514 nmdc:mga08x19_3938_c2 nmdc:mga08x19_3938_c2_3325_4344 309
44 3300031240 Ga0265320_10036046 Ga0265320_100360462 310
45 3300031711 Ga0265314_10030718 Ga0265314_100307182 310
46 3300037471 Ga0395905_0000026 Ga0395905_0000026_29494_30504 310
47 3300042876 Ga0451577_0000012 Ga0451577_0000012_468509_469516 310
48 3300046462 Ga0495651_0022561 Ga0495651_0022561_3803_4822 310
49 3300005338 Ga0068868_100299160 Ga0068868_1002991601 311
50 3300025960 Ga0207651_10081571 Ga0207651_100815713 311
51 3300026023 Ga0207677_10350669 Ga0207677_103506692 311
52 3300042876 Ga0451577_0123036 Ga0451577_0123036_860_1864 311
53 3300044673 Ga0453683_0000873 Ga0453683_0000873_4623_5627 311
54 3300045051 Ga0451576_0023945 Ga0451576_0023945_905_1909 311
55 3300049568 Ga0501031_0018362 Ga0501031_0018362_2012_3034 311
56 3300049569 Ga0501032_0000742 Ga0501032_0000742_18312_19334 311
57 3300049570 Ga0501033_0057172 Ga0501033_0057172_550_1572 311
58 3300049571 Ga0501034_0111928 Ga0501034_0111928_1301_2323 311
59 3300049574 Ga0501038_0001870 Ga0501038_0001870_17085_18107 311
60 3300049581 Ga0501047_0037427 Ga0501047_0037427_1312_2334 311
61 3300049582 Ga0501048_0013159 Ga0501048_0013159_545_1567 311
62 3300049744 Ga0501083_0186846 Ga0501083_0186846_36_1058 311
63 3300049822 Ga0501035_0007609 Ga0501035_0007609_6969_7991 311
64 3300049823 Ga0501044_0010903 Ga0501044_0010903_2258_3280 311
65 3300060353 Ga0501082_0222217 Ga0501082_0222217_272_1294 311
66 3300053103 Ga0500555_000552 Ga0500555_000552_590_1630 312
67 3300053153 Ga0500616_0001095 Ga0500616_0001095_26526_27566 312
68 3300053730 Ga0500645_001151 Ga0500645_001151_899_1939 312
69 iso_pu_bacteria 3006969106 3006969794 314
70 3300006914 Ga0075436_100005459 Ga0075436_1000054592 315
71 3300007265 Ga0099794_10036401 Ga0099794_100364012 315
72 3300048910 Ga0496107_0109866 Ga0496107_0109866_59_1096 315
73 3300006844 Ga0075428_100020634 Ga0075428_1000206343 316
74 3300006844 Ga0075428_100037868 Ga0075428_1000378684 316
75 3300006846 Ga0075430_100024862 Ga0075430_1000248623 316
76 3300027907 Ga0207428_10006669 Ga0207428_100066697 316
77 3300031548 Ga0307408_100005415 Ga0307408_1000054152 316
78 3300031911 Ga0307412_10079104 Ga0307412_100791042 316
79 3300032002 Ga0307416_100012190 Ga0307416_1000121904 316
80 3300032002 Ga0307416_100040339 Ga0307416_1000403392 316
81 3300032126 Ga0307415_100251119 Ga0307415_1002511192 316
82 3300050514 nmdc:mga08x19_196128_c1 nmdc:mga08x19_196128_c1_136_1212 316
83 3300005329 Ga0070683_100161314 Ga0070683_1001613142 317
84 3300006173 Ga0070716_100022260 Ga0070716_1000222604 317
85 3300007265 Ga0099794_10011398 Ga0099794_100113983 317
86 3300009148 Ga0105243_10483884 Ga0105243_104838841 317
87 3300025939 Ga0207665_10000023 Ga0207665_1000002380 317
88 3300027671 Ga0209588_1039214 Ga0209588_10392142 317
89 3300005331 Ga0070670_100211101 Ga0070670_1002111012 318
90 3300005456 Ga0070678_100116676 Ga0070678_1001166762 318
91 3300005840 Ga0068870_10011895 Ga0068870_100118952 318
92 3300006880 Ga0075429_100032125 Ga0075429_1000321253 318
93 3300031548 Ga0307408_100025106 Ga0307408_1000251062 318
94 3300031901 Ga0307406_10030570 Ga0307406_100305703 318
95 3300032002 Ga0307416_100008884 Ga0307416_1000088842 318
96 3300050508 nmdc:mga09592_17784_c1 nmdc:mga09592_17784_c1_1236_2306 318
97 3300005445 Ga0070708_100125120 Ga0070708_1001251202 319
98 3300006914 Ga0075436_100006092 Ga0075436_1000060923 320
99 3300035083 Ga0373926_0006385 Ga0373926_0006385_1718_2785 320
100 3300035111 Ga0373923_0032099 Ga0373923_0032099_157_1224 320
101 3300035171 Ga0373946_0006159 Ga0373946_0006159_457_1524 320
102 3300035695 Ga0373927_0000264 Ga0373927_0000264_31966_33033 320
103 3300035725 Ga0373947_0004803 Ga0373947_0004803_4419_5486 320
104 3300037068 Ga0373925_0002706 Ga0373925_0002706_2621_3688 320
105 3300046517 Ga0495630_0015245 Ga0495630_0015245_1735_2802 320
106 3300028800 Ga0265338_10020887 Ga0265338_100208876 321
107 3300029957 Ga0265324_10031428 Ga0265324_100314282 321
108 3300031240 Ga0265320_10045846 Ga0265320_100458463 321
109 3300031251 Ga0265327_10005771 Ga0265327_100057713 321
110 3300031711 Ga0265314_10077287 Ga0265314_100772872 321
111 3300035695 Ga0373927_0000896 Ga0373927_0000896_17039_18091 321
112 3300037068 Ga0373925_0008638 Ga0373925_0008638_3637_4689 321
113 3300046535 Ga0495586_0050938 Ga0495586_0050938_1060_2130 321
114 3300005327 Ga0070658_10002917 Ga0070658_1000291710 323
115 3300025909 Ga0207705_10001731 Ga0207705_100017318 323
116 3300053153 Ga0500616_0005156 Ga0500616_0005156_1408_2475 323
117 3300005458 Ga0070681_10038199 Ga0070681_100381994 324
118 3300005530 Ga0070679_100031207 Ga0070679_1000312073 324
119 3300048908 Ga0496105_0119302 Ga0496105_0119302_45_1130 324
120 3300005618 Ga0068864_100360765 Ga0068864_1003607652 325
121 3300025298 Ga0209050_1000212 Ga0209050_100021290 325
122 3300005354 Ga0070675_100058906 Ga0070675_1000589063 326
123 3300005548 Ga0070665_100000188 Ga0070665_10000018833 326
124 3300005841 Ga0068863_100026083 Ga0068863_1000260833 326
125 3300005844 Ga0068862_100246113 Ga0068862_1002461132 326
126 3300028379 Ga0268266_10000860 Ga0268266_1000086025 326
127 3300046522 Ga0495643_0000120 Ga0495643_0000120_114573_115634 326
128 3300005327 Ga0070658_10002536 Ga0070658_1000253612 327
129 3300005339 Ga0070660_100214172 Ga0070660_1002141721 327
130 3300005616 Ga0068852_100261490 Ga0068852_1002614902 327
131 3300005842 Ga0068858_100055955 Ga0068858_1000559552 327
132 3300005843 Ga0068860_100227965 Ga0068860_1002279651 327
133 3300006844 Ga0075428_100231058 Ga0075428_1002310582 327
134 3300009545 Ga0105237_10003086 Ga0105237_100030862 327
135 3300021384 Ga0213876_10102189 Ga0213876_101021891 327
136 3300025909 Ga0207705_10146519 Ga0207705_101465191 327
137 3300025914 Ga0207671_10005987 Ga0207671_100059872 327
138 3300026035 Ga0207703_10042163 Ga0207703_100421632 327
139 3300026035 Ga0207703_10063438 Ga0207703_100634382 327
140 3300026142 Ga0207698_10031660 Ga0207698_100316603 327
141 3300031995 Ga0307409_100115446 Ga0307409_1001154462 327
142 3300039437 Ga0436365_1160114 Ga0436365_1160114_1160_2224 327
143 3300005340 Ga0070689_100356500 Ga0070689_1003565001 328
144 3300005455 Ga0070663_100012661 Ga0070663_1000126613 328
145 3300005459 Ga0068867_100016870 Ga0068867_1000168704 328
146 3300005563 Ga0068855_100010299 Ga0068855_1000102992 328
147 3300025938 Ga0207704_10158247 Ga0207704_101582471 328
148 3300025949 Ga0207667_10004098 Ga0207667_100040982 328
149 3300026067 Ga0207678_10008276 Ga0207678_100082764 328
150 3300026089 Ga0207648_10022200 Ga0207648_100222004 328
151 3300028800 Ga0265338_10022261 Ga0265338_100222616 328
152 3300037418 Ga0395900_0019111 Ga0395900_0019111_2562_3650 328
153 3300037466 Ga0395898_0096222 Ga0395898_0096222_1706_2794 328
154 3300005327 Ga0070658_10010885 Ga0070658_100108855 329
155 3300005339 Ga0070660_100071922 Ga0070660_1000719222 329
156 3300005468 Ga0070707_100290270 Ga0070707_1002902702 329
157 3300005834 Ga0068851_10024339 Ga0068851_100243392 329
158 3300009545 Ga0105237_10126014 Ga0105237_101260142 329
159 3300010375 Ga0105239_10190906 Ga0105239_101909062 329
160 3300025913 Ga0207695_10000085 Ga0207695_1000008518 329
161 3300025922 Ga0207646_10244000 Ga0207646_102440002 329
162 3300026041 Ga0207639_10052938 Ga0207639_100529381 329
163 3300005530 Ga0070679_100244549 Ga0070679_1002445491 330
164 3300005843 Ga0068860_100079068 Ga0068860_1000790682 330
165 3300031595 Ga0265313_10039998 Ga0265313_100399982 330
166 3300042876 Ga0451577_0011500 Ga0451577_0011500_6852_7943 330
167 3300045051 Ga0451576_0012453 Ga0451576_0012453_53_1144 330
168 3300049593 Ga0501077_0060968 Ga0501077_0060968_361_1446 330
169 3300005364 Ga0070673_100205003 Ga0070673_1002050031 331
170 3300005436 Ga0070713_100161430 Ga0070713_1001614302 331
171 3300005439 Ga0070711_100110181 Ga0070711_1001101812 331
172 3300006175 Ga0070712_100139409 Ga0070712_1001394092 331
173 3300013296 Ga0157374_10210283 Ga0157374_102102831 331
174 3300013297 Ga0157378_10143814 Ga0157378_101438142 331
175 3300013306 Ga0163162_10171957 Ga0163162_101719572 331
176 3300025915 Ga0207693_10026172 Ga0207693_100261722 331
177 3300025922 Ga0207646_10012867 Ga0207646_100128676 331
178 3300025939 Ga0207665_10019810 Ga0207665_100198101 331
179 3300049742 Ga0501080_0055092 Ga0501080_0055092_1571_2698 331
180 3300005328 Ga0070676_10102752 Ga0070676_101027522 332
181 3300005333 Ga0070677_10045061 Ga0070677_100450611 332
182 3300005356 Ga0070674_100023749 Ga0070674_1000237492 332
183 3300005441 Ga0070700_100017453 Ga0070700_1000174532 332
184 3300005543 Ga0070672_100112322 Ga0070672_1001123222 332
185 3300005577 Ga0068857_100114093 Ga0068857_1001140932 332
186 3300005719 Ga0068861_100047112 Ga0068861_1000471122 332
187 3300009148 Ga0105243_10060958 Ga0105243_100609582 332
188 3300009176 Ga0105242_10112673 Ga0105242_101126732 332
189 3300013307 Ga0157372_10239437 Ga0157372_102394372 332
190 3300013308 Ga0157375_10100329 Ga0157375_101003292 332
191 3300014326 Ga0157380_10045102 Ga0157380_100451023 332
192 3300017792 Ga0163161_10113759 Ga0163161_101137592 332
193 3300025907 Ga0207645_10021596 Ga0207645_100215963 332
194 3300025908 Ga0207643_10012731 Ga0207643_100127312 332
195 3300025925 Ga0207650_10178427 Ga0207650_101784272 332
196 3300025934 Ga0207686_10101392 Ga0207686_101013922 332
197 3300025940 Ga0207691_10012321 Ga0207691_100123215 332
198 3300026089 Ga0207648_10002210 Ga0207648_100022105 332
199 3300026116 Ga0207674_10122904 Ga0207674_101229042 332
200 3300026118 Ga0207675_100003905 Ga0207675_10000390510 332
201 3300027682 Ga0209971_1005435 Ga0209971_10054351 332
202 3300027876 Ga0209974_10002106 Ga0209974_100021064 332
203 3300042876 Ga0451577_0019435 Ga0451577_0019435_4140_5216 333
204 3300003323 rootH1_10043434 rootH1_100434342 334
205 3300009098 Ga0105245_10028598 Ga0105245_100285984 334
206 3300025927 Ga0207687_10016054 Ga0207687_100160544 334

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

60

320

0.95

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

57

321

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ioy-assembly2.cif.gz_B crystal structure of thermoanaerobacter tengcongensis ribose binding protein 0.9602 40 305
4zjp-assembly1.cif.gz_A structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose 0.957 37 305
1drj-assembly1.cif.gz_A probing protein-protein interactions: the ribose-binding protein in bacterial transport and chemotaxis 0.9527 38 305
1drk-assembly1.cif.gz_A probing protein-protein interactions: the ribose-binding protein in bacterial transport and chemotaxis 0.9439 38 305
4ry0-assembly1.cif.gz_A crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose 0.9429 37 304
ID Description Score Start End Superfamily
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9846 37 140 3.40.50.2300
af_P02925_28_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9807 41 139 3.40.50.2300
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9754 37 140 3.40.50.2300
af_P37387_122_310_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9754 140 306 3.50.50.60
2fn9B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9613 40 134 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A4Q1ZTX4-F1-model_v4 Ribose ABC transporter substrate-binding protein RbsB 0.9637 42 305 GO:0030246
GO:0030313
AF-A4XMF2-F1-model_v4 Monosaccharide-transporting ATPase (EC 3.6.3.17) 0.9606 31 303 GO:0016020
GO:0016787
GO:0030246
GO:0030288
AF-A0A6P2B264-F1-model_v4 Periplasmic binding protein domain-containing protein 0.9574 37 305 GO:0030246
GO:0030313
AF-A0A524AT60-F1-model_v4 D-ribose ABC transporter substrate-binding protein 0.9516 52 305 GO:0030246
GO:0030313
AF-A0A644TMP6-F1-model_v4 Ribose import binding protein RbsB 0.9467 40 305 GO:0030246
GO:0030313

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Predicted Structure (AlphaFold2)

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