F317064

General Info

Members Datasets Scaffolds Average Seq Length
207 159 414 491

Family's Representative Sequence

Representative Sequence 3300050509|nmdc:mga0qj67_187013_c1|nmdc:mga0qj67_187013_c1_42_1646
Length 534
Sequence LGWIAAFISTKSRELRKCCRYASVKPADNSQESVPPGPLRTAIGVVLIGGPLLIAAHDWLGVGGGLFGDFVNGAVYAVVVLAAGLACLLKARASVRERAAWVVITAAIFSSALTDTYWAIAFADDPTPPFPSLADIGYLAFYPLAATGIYLLIRARTRTLDWRLWMDGMIAALGTAAVGAALVFEFVAERASGSPLDVFVTLAYPIGDILLLALVVGVVALTRWQPGRSWALVLLGLTFLLVADITTTMQSAGTGTEAAEDWVKPIFMLGAICIGAEAWQPPARAIPPAARFDGWRELIVPGFFAIVMIVLFSLQHFSQASTLTTVLWTATMLAVVARFAMSVRENKQLLEQVRTDPLTGLGNQGGMQVDLEGRVKRAAEEPFSLLLLDLNGFKAFNDTFGHPAGDAMLARLGRQFEAAIGDQGEAFRIGGDEFAALIYNPDPEGVAEVSKLAAEALTAAGEDYELGASWGVVGVPEEARTSAEAMQLADVRMYAQKQSRQLALGPTVTGPNKVASKPPGLEPLGQSEAVEQRA

Samples

Sample ID Description Type Environment
1 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
31 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
32 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
40 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
41 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
54 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
94 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
95 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
96 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
97 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
98 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
99 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
100 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
101 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
102 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
103 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
104 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
105 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
106 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
107 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
108 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
109 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
110 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
111 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
112 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
113 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
114 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
115 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
116 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
117 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
118 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
119 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
120 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
121 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
122 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
123 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
124 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
125 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
126 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
127 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
128 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
129 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
130 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
131 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
132 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
133 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
134 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
135 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
136 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
137 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
138 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
139 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
140 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
141 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
142 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
143 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
144 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
145 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
146 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
147 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
148 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
149 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
150 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
151 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
152 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
153 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
154 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
155 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
156 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
157 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
158 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
159 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.97
Nodule 0
Rhizoplane 9.66
Rhizosphere 88.41
Stem 0
Stem Tuber 0
Unclassified 0.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0qj67_187013_c1 3300050509 Bacteria 1683
2 Ga0070683_100010786 3300005329 Bacteria 7864
3 Ga0070683_100030457 3300005329 Bacteria 4899
4 Ga0070683_100126810 3300005329 Bacteria 2413
5 Ga0070690_100060261 3300005330 Bacteria 2442
6 Ga0070670_100104013 3300005331 Bacteria 2446
7 Ga0070677_10000057 3300005333 Bacteria 34822
8 Ga0070666_10016789 3300005335 Bacteria 4688
9 Ga0070682_100000013 3300005337 Bacteria 254641
10 Ga0068868_100000264 3300005338 Bacteria 35465
11 Ga0070661_100000599 3300005344 Bacteria 26985
12 Ga0070692_10030252 3300005345 Bacteria 2706
13 Ga0070668_100017770 3300005347 Bacteria 5333
14 Ga0070675_100000053 3300005354 Bacteria 70601
15 Ga0070674_100000082 3300005356 Bacteria 44418
16 Ga0070673_100003521 3300005364 Bacteria 9761
17 Ga0070688_100000012 3300005365 Bacteria 79406
18 Ga0070688_100000492 3300005365 Bacteria 20007
19 Ga0070667_100022527 3300005367 Bacteria 5223
20 Ga0070711_100003191 3300005439 Bacteria 9517
21 Ga0070681_10028144 3300005458 Bacteria 5651
22 Ga0068867_100002810 3300005459 Bacteria 12239
23 Ga0070685_10000018 3300005466 Bacteria 110132
24 Ga0070685_10000460 3300005466 Bacteria 23676
25 Ga0070679_100001299 3300005530 Bacteria 22062
26 Ga0070684_100007568 3300005535 Bacteria 8458
27 Ga0070684_100058198 3300005535 Bacteria 3377
28 Ga0070684_100068537 3300005535 Bacteria 3118
29 Ga0070684_100100050 3300005535 Bacteria 2588
30 Ga0068853_100013514 3300005539 Bacteria 6669
31 Ga0070665_100000244 3300005548 Bacteria 90284
32 Ga0070665_100001190 3300005548 Bacteria 31771
33 Ga0070704_100036180 3300005549 Bacteria 3362
34 Ga0068855_100215571 3300005563 Bacteria 2155
35 Ga0070664_100035350 3300005564 Bacteria 4195
36 Ga0068856_100041935 3300005614 Bacteria 4500
37 Ga0068852_100000012 3300005616 Bacteria 140734
38 Ga0068852_100023311 3300005616 Bacteria 4981
39 Ga0068864_100000045 3300005618 Bacteria 154739
40 Ga0068866_10000001 3300005718 Bacteria 519680
41 Ga0068851_10004420 3300005834 Bacteria 6340
42 Ga0068863_100000021 3300005841 Bacteria 198088
43 Ga0068858_100000109 3300005842 Bacteria 86772
44 Ga0068858_100000450 3300005842 Bacteria 43091
45 Ga0068860_100003539 3300005843 Bacteria 16070
46 Ga0068862_100001684 3300005844 Bacteria 20024
47 Ga0081455_10019980 3300005937 Bacteria 6323
48 Ga0081539_10005112 3300005985 Bacteria 13728
49 Ga0070715_10000001 3300006163 Bacteria 693690
50 Ga0070715_10019288 3300006163 Bacteria 2613
51 Ga0070712_100010171 3300006175 Bacteria 5929
52 Ga0075430_100086348 3300006846 Bacteria 2626
53 Ga0068865_100000402 3300006881 Bacteria 24075
54 Ga0075435_100069497 3300007076 Bacteria 2872
55 Ga0105245_10000016 3300009098 Bacteria 204372
56 Ga0105245_10000180 3300009098 Bacteria 59695
57 Ga0105245_10000619 3300009098 Bacteria 32213
58 Ga0105243_10082495 3300009148 Bacteria 2628
59 Ga0105242_10080904 3300009176 Bacteria 2715
60 Ga0105248_10000118 3300009177 Bacteria 90018
61 Ga0105238_10000201 3300009551 Bacteria 66092
62 Ga0105249_10000068 3300009553 Bacteria 148594
63 Ga0105249_10017350 3300009553 Bacteria 6392
64 Ga0157371_10007587 3300013102 Bacteria 8752
65 Ga0157370_10048101 3300013104 Bacteria 4087
66 Ga0157369_10000142 3300013105 Bacteria 101760
67 Ga0157374_10015871 3300013296 Bacteria 6617
68 Ga0157374_10146386 3300013296 Bacteria 2294
69 Ga0157378_10019730 3300013297 Bacteria 5928
70 Ga0157375_10029923 3300013308 Bacteria 5127
71 Ga0157380_10000059 3300014326 Bacteria 62280
72 Ga0157376_10137036 3300014969 Bacteria 2191
73 Ga0163161_10000032 3300017792 Bacteria 165511
74 Ga0207656_10003793 3300025321 Bacteria 5234
75 Ga0207682_10000129 3300025893 Bacteria 33994
76 Ga0207642_10000006 3300025899 Bacteria 230268
77 Ga0207642_10000007 3300025899 Bacteria 226017
78 Ga0207680_10011766 3300025903 Bacteria 4433
79 Ga0207685_10000011 3300025905 Bacteria 213430
80 Ga0207707_10020969 3300025912 Bacteria 5709
81 Ga0207693_10023092 3300025915 Bacteria 4940
82 Ga0207649_10000076 3300025920 Bacteria 83824
83 Ga0207652_10009493 3300025921 Bacteria 7821
84 Ga0207694_10000004 3300025924 Bacteria 967075
85 Ga0207650_10067758 3300025925 Bacteria 2679
86 Ga0207659_10000010 3300025926 Bacteria 286639
87 Ga0207687_10000007 3300025927 Bacteria 604185
88 Ga0207687_10000018 3300025927 Bacteria 236159
89 Ga0207687_10000269 3300025927 Bacteria 35470
90 Ga0207686_10082480 3300025934 Bacteria 2102
91 Ga0207709_10012407 3300025935 Bacteria 4696
92 Ga0207669_10000012 3300025937 Bacteria 138242
93 Ga0207704_10000190 3300025938 Bacteria 32246
94 Ga0207711_10000020 3300025941 Bacteria 363325
95 Ga0207661_10024156 3300025944 Bacteria 4602
96 Ga0207661_10048269 3300025944 Bacteria 3382
97 Ga0207679_10005707 3300025945 Bacteria 7807
98 Ga0207667_10205266 3300025949 Bacteria 2021
99 Ga0207651_10001792 3300025960 Bacteria 9983
100 Ga0207712_10000007 3300025961 Bacteria 539589
101 Ga0207712_10002838 3300025961 Bacteria 11097
102 Ga0207668_10028192 3300025972 Bacteria 3668
103 Ga0207658_10039773 3300025986 Bacteria 3394
104 Ga0207677_10000991 3300026023 Bacteria 15648
105 Ga0207703_10000040 3300026035 Bacteria 168191
106 Ga0207703_10000322 3300026035 Bacteria 52048
107 Ga0207702_10000016 3300026078 Bacteria 226633
108 Ga0207702_10024494 3300026078 Bacteria 5008
109 Ga0207648_10005841 3300026089 Bacteria 12323
110 Ga0207676_10000016 3300026095 Bacteria 311561
111 Ga0207683_10049487 3300026121 Bacteria 3680
112 Ga0207698_10000012 3300026142 Bacteria 260061
113 Ga0207698_10015894 3300026142 Bacteria 5058
114 Ga0268266_10000020 3300028379 Bacteria 527065
115 Ga0268266_10001355 3300028379 Bacteria 29570
116 Ga0268266_10057288 3300028379 Bacteria 3353
117 Ga0268265_10002428 3300028380 Bacteria 14072
118 Ga0265337_1000002 3300028556 Bacteria 139247
119 Ga0265326_10000007 3300028558 Bacteria 223057
120 Ga0265322_10000001 3300028654 Bacteria 543854
121 Ga0265336_10005033 3300028666 Bacteria 4921
122 Ga0265324_10000309 3300029957 Bacteria 35875
123 Ga0265328_10015224 3300031239 Bacteria 3017
124 Ga0265320_10000002 3300031240 Bacteria 542875
125 Ga0265329_10006193 3300031242 Bacteria 4766
126 Ga0265331_10000774 3300031250 Bacteria 26605
127 Ga0265327_10000011 3300031251 Bacteria 543807
128 Ga0265316_10055669 3300031344 Bacteria 3092
129 Ga0265314_10000058 3300031711 Bacteria 167476
130 Ga0451853_3782023 3300041512 Bacteria 5129
131 Ga0466963_0000023 3300044694 Bacteria 52546
132 Ga0466963_0030447 3300044694 Bacteria 3483
133 Ga0466957_0000501 3300044842 Bacteria 19646
134 Ga0495603_0000097 3300046455 Bacteria 40321
135 Ga0495603_0007931 3300046455 Bacteria 6407
136 Ga0495629_0001440 3300046459 Bacteria 18770
137 Ga0495641_0000003 3300046461 Bacteria 242879
138 Ga0495582_0000029 3300046473 Bacteria 77919
139 Ga0495662_0003001 3300046476 Bacteria 8516
140 Ga0495606_0000221 3300046507 Bacteria 101157
141 Ga0495608_0000204 3300046511 Bacteria 42513
142 Ga0495618_0000004 3300046514 Bacteria 245690
143 Ga0495630_0000018 3300046517 Bacteria 186064
144 Ga0495630_0010572 3300046517 Bacteria 6668
145 Ga0495652_0000019 3300046529 Bacteria 190248
146 Ga0495652_0004947 3300046529 Bacteria 12631
147 Ga0495586_0001509 3300046535 Bacteria 12861
148 Ga0495645_0043744 3300046543 Bacteria 3267
149 Ga0495667_0000032 3300046559 Bacteria 143493
150 Ga0495668_0091180 3300046616 Bacteria 1670
151 Ga0495634_0005013 3300046642 Bacteria 10230
152 Ga0495634_0037276 3300046642 Bacteria 3323
153 Ga0495625_0000122 3300046660 Bacteria 121146
154 Ga0495635_0000016 3300046663 Bacteria 214088
155 Ga0495588_0000376 3300046674 Bacteria 26068
156 Ga0495657_0008637 3300046675 Bacteria 7774
157 Ga0495647_0000025 3300046681 Bacteria 65184
158 Ga0495658_0000026 3300046683 Bacteria 77681
159 Ga0495658_0004046 3300046683 Bacteria 7223
160 Ga0495669_0002115 3300046684 Bacteria 8148
161 Ga0495669_0012031 3300046684 Unclassified 3680
162 Ga0495613_0000073 3300046689 Bacteria 98688
163 Ga0495613_0000152 3300046689 Bacteria 68384
164 Ga0495624_0000009 3300046690 Bacteria 145026
165 Ga0495600_0001553 3300046809 Bacteria 12768
166 Ga0495600_0016757 3300046809 Bacteria 4657
167 Ga0495604_0003874 3300047317 Bacteria 11917
168 Ga0495604_0098477 3300047317 Bacteria 2154
169 Ga0495676_0000676 3300047321 Bacteria 28342
170 Ga0495680_0000061 3300047322 Bacteria 90676
171 Ga0495680_0031465 3300047322 Bacteria 4319
172 Ga0495675_0091157 3300047444 Bacteria 1913
173 Ga0495679_003496 3300047446 Bacteria 7522
174 Ga0495684_0096062 3300047471 Bacteria 2243
175 Ga0495602_0000021 3300048088 Bacteria 168585
176 Ga0496100_0000002 3300048903 Bacteria 489057
177 Ga0496101_0000001 3300048904 Bacteria 489057
178 Ga0496104_0001485 3300048907 Bacteria 20235
179 Ga0496104_0001914 3300048907 Bacteria 18049
180 Ga0496105_0000500 3300048908 Bacteria 25873
181 Ga0496105_0001199 3300048908 Bacteria 18054
182 Ga0496106_0000022 3300048909 Bacteria 166339
183 Ga0496107_0000016 3300048910 Bacteria 172319
184 Ga0496108_0000001 3300048911 Bacteria 919044
185 Ga0496108_0000132 3300048911 Bacteria 73888
186 Ga0496108_0013883 3300048911 Bacteria 6569
187 Ga0496109_0000003 3300048912 Bacteria 420862
188 Ga0496109_0000007 3300048912 Bacteria 247554
189 Ga0496109_0000028 3300048912 Bacteria 168138
190 Ga0496110_0005142 3300048913 Bacteria 10223
191 Ga0496113_0036530 3300048916 Bacteria 3600
192 Ga0496113_0108094 3300048916 Bacteria 2162
193 Ga0496114_0004542 3300048917 Bacteria 10776
194 Ga0496114_0030729 3300048917 Bacteria 4420
195 Ga0496115_0018052 3300048918 Bacteria 5407
196 Ga0496125_0071309 3300048928 Bacteria 2715
197 Ga0501042_0040126 3300049578 Bacteria 3328
198 nmdc:mga0a205_437_c1 3300050515 Bacteria 6200
199 Ga0495601_0000039 3300053077 Bacteria 79594
200 Ga0495601_0000258 3300053077 Bacteria 28539
201 Ga0495601_0002866 3300053077 Bacteria 9802
202 Ga0495595_0000338 3300053084 Bacteria 18068
203 Ga0495595_0001053 3300053084 Bacteria 10648
204 Ga0495619_0000021 3300053085 Bacteria 187095
205 Ga0495619_0004877 3300053085 Bacteria 8519
206 Ga0500641_0004674 3300053096 Bacteria 4839
207 Ga0500614_000220 3300053123 Bacteria 15019
208 nmdc:mga0qj67_187013_c1
209 Ga0070683_100010786
210 Ga0070683_100030457
211 Ga0070683_100126810
212 Ga0070690_100060261
213 Ga0070670_100104013
214 Ga0070677_10000057
215 Ga0070666_10016789
216 Ga0070682_100000013
217 Ga0068868_100000264
218 Ga0070661_100000599
219 Ga0070692_10030252
220 Ga0070668_100017770
221 Ga0070675_100000053
222 Ga0070674_100000082
223 Ga0070673_100003521
224 Ga0070688_100000012
225 Ga0070688_100000492
226 Ga0070667_100022527
227 Ga0070711_100003191
228 Ga0070681_10028144
229 Ga0068867_100002810
230 Ga0070685_10000018
231 Ga0070685_10000460
232 Ga0070679_100001299
233 Ga0070684_100007568
234 Ga0070684_100058198
235 Ga0070684_100068537
236 Ga0070684_100100050
237 Ga0068853_100013514
238 Ga0070665_100000244
239 Ga0070665_100001190
240 Ga0070704_100036180
241 Ga0068855_100215571
242 Ga0070664_100035350
243 Ga0068856_100041935
244 Ga0068852_100000012
245 Ga0068852_100023311
246 Ga0068864_100000045
247 Ga0068866_10000001
248 Ga0068851_10004420
249 Ga0068863_100000021
250 Ga0068858_100000109
251 Ga0068858_100000450
252 Ga0068860_100003539
253 Ga0068862_100001684
254 Ga0081455_10019980
255 Ga0081539_10005112
256 Ga0070715_10000001
257 Ga0070715_10019288
258 Ga0070712_100010171
259 Ga0075430_100086348
260 Ga0068865_100000402
261 Ga0075435_100069497
262 Ga0105245_10000016
263 Ga0105245_10000180
264 Ga0105245_10000619
265 Ga0105243_10082495
266 Ga0105242_10080904
267 Ga0105248_10000118
268 Ga0105238_10000201
269 Ga0105249_10000068
270 Ga0105249_10017350
271 Ga0157371_10007587
272 Ga0157370_10048101
273 Ga0157369_10000142
274 Ga0157374_10015871
275 Ga0157374_10146386
276 Ga0157378_10019730
277 Ga0157375_10029923
278 Ga0157380_10000059
279 Ga0157376_10137036
280 Ga0163161_10000032
281 Ga0207656_10003793
282 Ga0207682_10000129
283 Ga0207642_10000006
284 Ga0207642_10000007
285 Ga0207680_10011766
286 Ga0207685_10000011
287 Ga0207707_10020969
288 Ga0207693_10023092
289 Ga0207649_10000076
290 Ga0207652_10009493
291 Ga0207694_10000004
292 Ga0207650_10067758
293 Ga0207659_10000010
294 Ga0207687_10000007
295 Ga0207687_10000018
296 Ga0207687_10000269
297 Ga0207686_10082480
298 Ga0207709_10012407
299 Ga0207669_10000012
300 Ga0207704_10000190
301 Ga0207711_10000020
302 Ga0207661_10024156
303 Ga0207661_10048269
304 Ga0207679_10005707
305 Ga0207667_10205266
306 Ga0207651_10001792
307 Ga0207712_10000007
308 Ga0207712_10002838
309 Ga0207668_10028192
310 Ga0207658_10039773
311 Ga0207677_10000991
312 Ga0207703_10000040
313 Ga0207703_10000322
314 Ga0207702_10000016
315 Ga0207702_10024494
316 Ga0207648_10005841
317 Ga0207676_10000016
318 Ga0207683_10049487
319 Ga0207698_10000012
320 Ga0207698_10015894
321 Ga0268266_10000020
322 Ga0268266_10001355
323 Ga0268266_10057288
324 Ga0268265_10002428
325 Ga0265337_1000002
326 Ga0265326_10000007
327 Ga0265322_10000001
328 Ga0265336_10005033
329 Ga0265324_10000309
330 Ga0265328_10015224
331 Ga0265320_10000002
332 Ga0265329_10006193
333 Ga0265331_10000774
334 Ga0265327_10000011
335 Ga0265316_10055669
336 Ga0265314_10000058
337 Ga0451853_3782023
338 Ga0466963_0000023
339 Ga0466963_0030447
340 Ga0466957_0000501
341 Ga0495603_0000097
342 Ga0495603_0007931
343 Ga0495629_0001440
344 Ga0495641_0000003
345 Ga0495582_0000029
346 Ga0495662_0003001
347 Ga0495606_0000221
348 Ga0495608_0000204
349 Ga0495618_0000004
350 Ga0495630_0000018
351 Ga0495630_0010572
352 Ga0495652_0000019
353 Ga0495652_0004947
354 Ga0495586_0001509
355 Ga0495645_0043744
356 Ga0495667_0000032
357 Ga0495668_0091180
358 Ga0495634_0005013
359 Ga0495634_0037276
360 Ga0495625_0000122
361 Ga0495635_0000016
362 Ga0495588_0000376
363 Ga0495657_0008637
364 Ga0495647_0000025
365 Ga0495658_0000026
366 Ga0495658_0004046
367 Ga0495669_0002115
368 Ga0495669_0012031
369 Ga0495613_0000073
370 Ga0495613_0000152
371 Ga0495624_0000009
372 Ga0495600_0001553
373 Ga0495600_0016757
374 Ga0495604_0003874
375 Ga0495604_0098477
376 Ga0495676_0000676
377 Ga0495680_0000061
378 Ga0495680_0031465
379 Ga0495675_0091157
380 Ga0495679_003496
381 Ga0495684_0096062
382 Ga0495602_0000021
383 Ga0496100_0000002
384 Ga0496101_0000001
385 Ga0496104_0001485
386 Ga0496104_0001914
387 Ga0496105_0000500
388 Ga0496105_0001199
389 Ga0496106_0000022
390 Ga0496107_0000016
391 Ga0496108_0000001
392 Ga0496108_0000132
393 Ga0496108_0013883
394 Ga0496109_0000003
395 Ga0496109_0000007
396 Ga0496109_0000028
397 Ga0496110_0005142
398 Ga0496113_0036530
399 Ga0496113_0108094
400 Ga0496114_0004542
401 Ga0496114_0030729
402 Ga0496115_0018052
403 Ga0496125_0071309
404 Ga0501042_0040126
405 nmdc:mga0a205_437_c1
406 Ga0495601_0000039
407 Ga0495601_0000258
408 Ga0495601_0002866
409 Ga0495595_0000338
410 Ga0495595_0001053
411 Ga0495619_0000021
412 Ga0495619_0004877
413 Ga0500641_0004674
414 Ga0500614_000220

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00990

GGDEF

Diguanylate cyclase, GGDEF domain

353

502

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4iob-assembly1.cif.gz_A crystal structure of the ggdef domain of pa1120 (yfin or tpbb) from pseudomonas aeruginosa at 2.7 ang. 0.8506 320 464
6pwj-assembly2.cif.gz_B vibrio cholerae lapd s helix-ggdef-eal (apo) 0.8353 306 455
4wxw-assembly1.cif.gz_A sadc (323-487) from pseudomonas aeruginosa pao1 0.8339 315 464
6pwk-assembly1.cif.gz_B vibrio cholerae lapd s helix-ggdef-eal (bound to c-di-gmp) 0.8287 301 455
4yme-assembly1.cif.gz_A crystal structure of a sensory box/ggdef family protein (cc_0091) from caulobacter crescentus cb15 at 1.40 a resolution (psi community target, shapiro) 0.8216 316 464
ID Description Score Start End Superfamily
af_Q2G061_179_351_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.86 314 464 3.30.70.270
4iobA00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8506 320 464 3.30.70.270
2v0nA03 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8499 315 464 3.30.70.270
af_P77334_235_407_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.848 316 464 3.30.70.270
af_P76129_371_542_3.30.70.270 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Reverse transcriptase/Diguanylate cyclase domain 0.8461 311 464 3.30.70.270
ID Description Score Start End GO Terms
AF-A8ILU5-F1-model_v4 Putative signaling protein 0.8747 306 464
AF-A0A161WSM1-F1-model_v4 Cyclic di-GMP phosphodiesterase response regulator RpfG (EC 3.1.4.52) 0.8702 304 468 GO:0007165
GO:0016020
GO:0071111
AF-J3CA90-F1-model_v4 Diguanylate cyclase (GGDEF) domain-containing protein 0.87 315 464
AF-A0A2N1QBL7-F1-model_v4 Diguanylate cyclase 0.8695 304 464
AF-A0A3D4PZH0-F1-model_v4 diguanylate cyclase (EC 2.7.7.65) 0.8683 287 463 GO:0005886
GO:0043709
GO:0052621
GO:1902201

Map