F318633

General Info

Members Datasets Scaffolds Average Seq Length
209 160 179 619

Family's Representative Sequence

Representative Sequence 3300005327|Ga0070658_10007242|Ga0070658_100072422
Length 751
Sequence VHSSLPHSHEPYTWIGVADAAEAGVTGRLNELIDNAAAPIAPKALSLPNIDTLLPCWPAPLAAGLDDVDERRRSGGDQCDVHARRPFVGRRVWDRYDRDDAVQTRNDHGTAIGRSTDHRLPQRRRRPAPRLRRVAGRIPDSDIARVRELSPIADVVGEHVTLKSAGGGSLKGLCPFHDERSPSFNVTPARGFWHCFGCGEGGDVISFVQKIDQLSFSEAVEHLAGRANYELHYEQGGSAPRGQQGQRARLVEAHRLAADYFAEHLASAEGVIGRRFLDERGFDAASAAHFGVGYAPVGWENLVKHLRAKGFSDDELATSGLASRGQRGVIDRFRGRLVWPIRDVTGDVVGFGARKLRDDDDGPKYLNTPETPLYKKSQVLYGIDLAKRDMAKARQAVVVEGYTDVMACHLAGVTTAVATCGTAFGEDHVRILRRLLLDTAEYAGEVIFTFDGDAAGQKAALRAFETDQKFVTHTFVAISPDNMDPCELRIARGDAAVRDLVARRQPLFEFAVRSVLSGFDLEIPEGRVGALERTMPLVARIKDASLRDEYARRLAGWVGAPDELAVLDRVRRIAAPAGNQQSRRPSVAADRPDPRDPTLQVEREALKLAMQRPALLGPAFDALDPLAFTAAAYCEVRDAIAKAGGTGSTAGGDAWVNSVVEGAVDDRVRNLLTELVVEPLLVTGEPDMRYAAAQIARLRVRAVDRLIAELKSRLQRVNPIEQSAEHNKLFAELIMLEKRRRDDLDGALSGG

Samples

Sample ID Description Type Environment
1 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
2 2582580736 Prauserella sp. Am3 Isolate Unclassified
3 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
4 2643221613 Oerskovia sp. Root22 Isolate Unclassified
5 2643221641 Nocardioides sp. Root122 Isolate Unclassified
6 2643221679 Angustibacter sp. Root456 Isolate Unclassified
7 2643221721 Oerskovia sp. Root918 Isolate Unclassified
8 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
9 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
10 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
11 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
12 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
13 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
14 2795385472 Herbihabitans rhizosphaerae DSM 101727 Isolate Rhizosphere
15 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
16 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
17 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
18 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
19 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
20 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
21 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
22 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
23 2922554459 Rhodococcus sp. 66b Isolate Unclassified
24 2928153084 Leifsonia sp. 563 Isolate Unclassified
25 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
26 2935890801 Oerskovia enterophila 3230 Isolate Rhizosphere
27 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
28 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
29 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
30 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
31 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
32 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
33 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
34 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
35 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
36 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
37 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
38 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
39 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
40 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
41 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
42 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
43 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
44 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
45 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
46 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
47 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
48 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
49 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
50 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
51 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
52 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
53 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
54 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
55 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
56 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
57 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
58 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
59 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
60 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
61 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
62 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
67 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
68 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
95 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
96 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
97 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
98 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
99 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
100 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
101 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
102 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
103 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
104 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
105 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
106 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
107 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
108 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
109 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
110 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
111 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
112 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
113 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
114 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
115 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
116 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
117 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
120 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
121 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
122 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
123 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
124 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
125 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
126 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
127 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
128 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
129 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
130 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
131 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
132 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
133 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
134 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
135 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
136 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
137 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
138 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
145 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
146 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
149 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
150 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
151 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
152 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
153 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
154 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
155 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
156 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
157 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
158 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
159 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
160 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.69
Metatranscriptomes 0.96
Isolates 14.35

Biome Distribution

Category Percentage (%)
Aerial Root 0.48
Bulb 0
Endosphere 8.13
Nodule 0
Rhizoplane 6.7
Rhizosphere 70.33
Stem 0
Stem Tuber 0
Unclassified 14.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055527_1000001 3300003760 Bacteria 850044
2 Ga0055529_1000018 3300003763 Bacteria 344344
3 Ga0070658_10001194 3300005327 Bacteria 22223
4 Ga0070658_10007242 3300005327 Bacteria 8954
5 Ga0070658_10019223 3300005327 Bacteria 5472
6 Ga0070683_100002038 3300005329 Bacteria 15912
7 Ga0070683_100040096 3300005329 Bacteria 4302
8 Ga0070680_100000874 3300005336 Bacteria 21378
9 Ga0070659_100005705 3300005366 Bacteria 8961
10 Ga0070662_100064651 3300005457 Bacteria 2680
11 Ga0070681_10034701 3300005458 Bacteria 5066
12 Ga0070685_10008233 3300005466 Bacteria 5348
13 Ga0070679_100008391 3300005530 Bacteria 9721
14 Ga0070679_100019631 3300005530 Bacteria 6577
15 Ga0070684_100005537 3300005535 Bacteria 9691
16 Ga0070665_100000582 3300005548 Bacteria 50895
17 Ga0070664_100029028 3300005564 Bacteria 4609
18 Ga0068857_100014689 3300005577 Bacteria 6832
19 Ga0068857_100034532 3300005577 Bacteria 4474
20 Ga0068851_10000003 3300005834 Bacteria 293018
21 Ga0068863_100009827 3300005841 Bacteria 9321
22 Ga0068863_100103828 3300005841 Bacteria 2704
23 Ga0068858_100001363 3300005842 Bacteria 25145
24 Ga0068860_100000669 3300005843 Bacteria 39653
25 Ga0081539_10008774 3300005985 Bacteria 8672
26 Ga0075363_100003362 3300006048 Bacteria 6792
27 Ga0075370_10009899 3300006353 Bacteria 4967
28 Ga0075428_100001204 3300006844 Bacteria 27648
29 Ga0075430_100069557 3300006846 Bacteria 2953
30 Ga0075431_100037331 3300006847 Bacteria 5006
31 Ga0075429_100046407 3300006880 Bacteria 3780
32 Ga0105245_10001813 3300009098 Bacteria 19433
33 Ga0105245_10007950 3300009098 Bacteria 9275
34 Ga0105245_10048640 3300009098 Bacteria 3794
35 Ga0105247_10026429 3300009101 Bacteria 3504
36 Ga0114129_10022776 3300009147 Bacteria 8882
37 Ga0114129_10258115 3300009147 Bacteria 2337
38 Ga0105243_10001854 3300009148 Bacteria 18042
39 Ga0105248_10003592 3300009177 Bacteria 17186
40 Ga0105248_10094833 3300009177 Bacteria 3360
41 Ga0105237_10000131 3300009545 Bacteria 105010
42 Ga0105237_10068893 3300009545 Bacteria 3532
43 Ga0105239_10021004 3300010375 Bacteria 7205
44 Ga0105239_10132262 3300010375 Bacteria 2776
45 Ga0157369_10017129 3300013105 Bacteria 8140
46 Ga0157369_10067701 3300013105 Bacteria 3838
47 Ga0157375_10015822 3300013308 Bacteria 6760
48 Ga0163163_10051450 3300014325 Bacteria 4062
49 Ga0157379_10020464 3300014968 Bacteria 5851
50 Ga0206356_11396490 3300020070 Bacteria 5164
51 Ga0206353_10062650 3300020082 Bacteria 12050
52 Ga0209672_100006 3300025228 Bacteria 1004497
53 Ga0209147_100766 3300025229 Bacteria 15718
54 Ga0209148_1000015 3300025254 Bacteria 850103
55 Ga0209455_1000013 3300025272 Bacteria 850103
56 Ga0207656_10000002 3300025321 Bacteria 792178
57 Ga0207705_10002511 3300025909 Bacteria 14141
58 Ga0207705_10007121 3300025909 Bacteria 8247
59 Ga0207705_10025248 3300025909 Bacteria 4242
60 Ga0207705_10026371 3300025909 Bacteria 4144
61 Ga0207654_10000001 3300025911 Bacteria 1816198
62 Ga0207707_10001966 3300025912 Bacteria 18683
63 Ga0207695_10027587 3300025913 Bacteria 6321
64 Ga0207695_10083800 3300025913 Bacteria 3220
65 Ga0207671_10000002 3300025914 Bacteria 1144816
66 Ga0207660_10004109 3300025917 Bacteria 9477
67 Ga0207652_10009413 3300025921 Bacteria 7855
68 Ga0207652_10012442 3300025921 Bacteria 6876
69 Ga0207694_10000092 3300025924 Bacteria 100605
70 Ga0207690_10001146 3300025932 Bacteria 16853
71 Ga0207709_10001964 3300025935 Bacteria 13431
72 Ga0207711_10013846 3300025941 Bacteria 6698
73 Ga0207711_10018694 3300025941 Bacteria 5762
74 Ga0207661_10002262 3300025944 Bacteria 13274
75 Ga0207661_10027592 3300025944 Bacteria 4338
76 Ga0207667_10008720 3300025949 Bacteria 12020
77 Ga0207667_10054762 3300025949 Bacteria 4195
78 Ga0207703_10000031 3300026035 Bacteria 196940
79 Ga0207639_10033502 3300026041 Bacteria 3789
80 Ga0207641_10009955 3300026088 Bacteria 7825
81 Ga0207641_10141764 3300026088 Bacteria 2169
82 Ga0207676_10139586 3300026095 Bacteria 2073
83 Ga0207674_10048632 3300026116 Bacteria 4340
84 Ga0207698_10000604 3300026142 Bacteria 21071
85 Ga0268266_10009210 3300028379 Bacteria 8711
86 Ga0268264_10000510 3300028381 Bacteria 50047
87 Ga0265325_10027477 3300031241 Bacteria 3075
88 Ga0265340_10020339 3300031247 Bacteria 3412
89 Ga0316575_10000005 3300031665 Bacteria 88266
90 Ga0316579_10000202 3300031691 Bacteria 17634
91 Ga0316576_10003362 3300031727 Bacteria 9354
92 Ga0316577_10021318 3300031733 Bacteria 3595
93 Ga0307416_100070289 3300032002 Bacteria 2902
94 Ga0307415_100030354 3300032126 Bacteria 3468
95 Ga0316584_0045648 3300036712 Bacteria 3271
96 Ga0395900_0027389 3300037418 Bacteria 5837
97 Ga0395900_0086749 3300037418 Bacteria 3217
98 Ga0395898_0000752 3300037466 Bacteria 56634
99 Ga0436364_1150565 3300037853 Bacteria 3253
100 Ga0395901_0017179 3300038443 Bacteria 7381
101 Ga0395901_0157786 3300038443 Bacteria 2382
102 Ga0436365_0548618 3300039437 Bacteria 38439
103 Ga0466966_0056627 3300044684 Bacteria 2480
104 Ga0466961_0028948 3300044693 Bacteria 3562
105 Ga0466963_0024326 3300044694 Bacteria 3855
106 Ga0466963_0043284 3300044694 Bacteria 2960
107 Ga0466963_0063364 3300044694 Bacteria 2474
108 Ga0453684_0001518 3300044712 Bacteria 65070
109 Ga0466957_0001131 3300044842 Bacteria 13823
110 Ga0466957_0085836 3300044842 Bacteria 1966
111 Ga0466960_0001114 3300044901 Bacteria 9654
112 Ga0466960_0011283 3300044901 Bacteria 3733
113 Ga0466958_0006197 3300045836 Bacteria 6491
114 Ga0466958_0014425 3300045836 Bacteria 4512
115 Ga0466967_0001691 3300045976 Bacteria 13115
116 Ga0466967_0001989 3300045976 Bacteria 12417
117 Ga0466967_0003169 3300045976 Bacteria 10608
118 Ga0466967_0005452 3300045976 Bacteria 8821
119 Ga0466967_0015620 3300045976 Bacteria 5957
120 Ga0466967_0058526 3300045976 Bacteria 3407
121 Ga0466967_0059235 3300045976 Bacteria 3389
122 Ga0466967_0082458 3300045976 Bacteria 2906
123 Ga0495603_0006431 3300046455 Bacteria 7035
124 Ga0495638_0004981 3300046460 Bacteria 9964
125 Ga0495650_0007446 3300046471 Bacteria 6572
126 Ga0495668_0000043 3300046616 Bacteria 227636
127 Ga0495674_0071232 3300047319 Bacteria 3002
128 Ga0495676_0029074 3300047321 Bacteria 4709
129 Ga0496100_0020957 3300048903 Bacteria 3928
130 Ga0496100_0026059 3300048903 Bacteria 3581
131 Ga0496101_0010396 3300048904 Bacteria 6146
132 Ga0496102_0000364 3300048905 Bacteria 54616
133 Ga0496103_0000522 3300048906 Bacteria 31542
134 Ga0496104_0037256 3300048907 Bacteria 4549
135 Ga0496107_0068723 3300048910 Bacteria 2571
136 Ga0496110_0038008 3300048913 Bacteria 4186
137 Ga0496111_0042487 3300048914 Bacteria 3264
138 Ga0496114_0007711 3300048917 Bacteria 8514
139 Ga0496114_0010538 3300048917 Bacteria 7356
140 Ga0496114_0076690 3300048917 Bacteria 2817
141 Ga0496115_0000835 3300048918 Bacteria 22514
142 Ga0496115_0096578 3300048918 Bacteria 2420
143 Ga0496116_0000517 3300048919 Bacteria 52137
144 Ga0496117_0000710 3300048920 Bacteria 52793
145 Ga0496117_0009340 3300048920 Bacteria 9139
146 Ga0496118_0000755 3300048921 Bacteria 52303
147 Ga0496119_0000712 3300048922 Bacteria 44681
148 Ga0496120_0018578 3300048923 Bacteria 4475
149 Ga0496126_0000339 3300048929 Bacteria 98318
150 Ga0496126_0000884 3300048929 Bacteria 52678
151 Ga0496126_0012238 3300048929 Bacteria 8801
152 Ga0496126_0017230 3300048929 Bacteria 7200
153 Ga0496126_0114973 3300048929 Bacteria 2340
154 Ga0501032_0048694 3300049569 Bacteria 2861
155 Ga0501033_0009705 3300049570 Bacteria 7401
156 Ga0501034_0001812 3300049571 Bacteria 27214
157 Ga0501046_0001751 3300049580 Bacteria 20734
158 Ga0501047_0000809 3300049581 Bacteria 32626
159 Ga0501048_0026233 3300049582 Bacteria 4242
160 Ga0501070_0000088 3300049586 Bacteria 77423
161 Ga0501070_0001639 3300049586 Bacteria 19832
162 Ga0501070_0003335 3300049586 Bacteria 13946
163 Ga0501070_0033882 3300049586 Bacteria 4273
164 Ga0501072_0067780 3300049588 Bacteria 2816
165 Ga0501074_0047989 3300049590 Bacteria 3085
166 Ga0501044_0000454 3300049823 Bacteria 49886
167 Ga0501044_0004719 3300049823 Bacteria 15232
168 nmdc:mga03n38_9129_c1 3300050490 Bacteria 3590
169 nmdc:mga0yw44_8638_c2 3300050492 Bacteria 3611
170 nmdc:mga07m45_7797_c1 3300050496 Bacteria 5479
171 nmdc:mga05p37_17148_c1 3300050507 Bacteria 8737
172 nmdc:mga06r32_30907_c1 3300050510 Bacteria 5026
173 Ga0500635_0000013 3300053080 Bacteria 133088
174 Ga0500651_0000300 3300053093 Bacteria 28581
175 Ga0500590_005209 3300053148 Bacteria 6239
176 Ga0500620_000060 3300053155 Bacteria 20194
177 Ga0500627_0028025 3300053158 Bacteria 2336
178 Ga0500645_000211 3300053730 Bacteria 44738
179 Ga0501084_0074625 3300054114 Bacteria 2840

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300054114 Ga0501084_0074625 Ga0501084_0074625_1140_2810 481
2 3300045976 Ga0466967_0059235 Ga0466967_0059235_492_2381 500
3 3300009101 Ga0105247_10026429 Ga0105247_100264291 512
4 3300044694 Ga0466963_0063364 Ga0466963_0063364_231_2111 530
5 3300005327 Ga0070658_10019223 Ga0070658_100192238 540
6 3300005336 Ga0070680_100000874 Ga0070680_1000008748 540
7 3300005458 Ga0070681_10034701 Ga0070681_100347011 540
8 3300005530 Ga0070679_100019631 Ga0070679_1000196317 540
9 3300020070 Ga0206356_11396490 Ga0206356_113964903 540
10 3300020082 Ga0206353_10062650 Ga0206353_100626505 540
11 3300025909 Ga0207705_10002511 Ga0207705_100025118 540
12 3300025912 Ga0207707_10001966 Ga0207707_1000196613 540
13 3300025917 Ga0207660_10004109 Ga0207660_100041094 540
14 3300025921 Ga0207652_10012442 Ga0207652_100124428 540
15 3300044712 Ga0453684_0001518 Ga0453684_0001518_60793_62748 541
16 iso_pu_bacteria 2643221613 2644083037 541
17 iso_pu_bacteria 2643221721 2644665992 541
18 3300006880 Ga0075429_100046407 Ga0075429_1000464072 542
19 3300031241 Ga0265325_10027477 Ga0265325_100274772 542
20 3300031247 Ga0265340_10020339 Ga0265340_100203391 542
21 3300031733 Ga0316577_10021318 Ga0316577_100213183 542
22 3300032002 Ga0307416_100070289 Ga0307416_1000702892 542
23 3300036712 Ga0316584_0045648 Ga0316584_0045648_482_2311 542
24 3300038443 Ga0395901_0157786 Ga0395901_0157786_470_2350 542
25 3300006844 Ga0075428_100001204 Ga0075428_10000120426 543
26 3300032126 Ga0307415_100030354 Ga0307415_1000303545 543
27 3300005841 Ga0068863_100009827 Ga0068863_1000098278 547
28 3300006847 Ga0075431_100037331 Ga0075431_1000373313 547
29 3300014968 Ga0157379_10020464 Ga0157379_100204646 547
30 3300026088 Ga0207641_10009955 Ga0207641_100099558 547
31 3300048903 Ga0496100_0020957 Ga0496100_0020957_1519_3417 547
32 3300048904 Ga0496101_0010396 Ga0496101_0010396_1872_3770 547
33 3300048905 Ga0496102_0000364 Ga0496102_0000364_12267_14165 547
34 3300048906 Ga0496103_0000522 Ga0496103_0000522_18196_20094 547
35 3300048907 Ga0496104_0037256 Ga0496104_0037256_215_2113 547
36 3300048910 Ga0496107_0068723 Ga0496107_0068723_453_2351 547
37 3300048913 Ga0496110_0038008 Ga0496110_0038008_352_2250 547
38 3300048919 Ga0496116_0000517 Ga0496116_0000517_38514_40412 547
39 3300048920 Ga0496117_0000710 Ga0496117_0000710_39447_41345 547
40 3300048921 Ga0496118_0000755 Ga0496118_0000755_11752_13650 547
41 3300048922 Ga0496119_0000712 Ga0496119_0000712_11832_13730 547
42 3300048929 Ga0496126_0000884 Ga0496126_0000884_12267_14165 547
43 3300050510 nmdc:mga06r32_30907_c1 nmdc:mga06r32_30907_c1_1735_3576 547
44 iso_pu_bacteria 2738543011 2739238420 547
45 iso_pu_bacteria 2889300758 2889302320 547
46 iso_pu_bacteria 2939743619 2939748253 547
47 3300049570 Ga0501033_0009705 Ga0501033_0009705_270_2174 548
48 3300049588 Ga0501072_0067780 Ga0501072_0067780_466_2358 548
49 3300049823 Ga0501044_0000454 Ga0501044_0000454_43967_45871 548
50 iso_pu_bacteria 2844841374 2844842370 548
51 iso_pu_bacteria 2919055335 2919058018 548
52 iso_pu_bacteria 2919523602 2919524409 548
53 iso_pu_bacteria 2928153084 2928155968 548
54 3300045976 Ga0466967_0015620 Ga0466967_0015620_1710_3608 549
55 3300049581 Ga0501047_0000809 Ga0501047_0000809_3409_5286 549
56 iso_pu_bacteria 2775506925 2776375386 549
57 iso_pu_bacteria 2863067949 2863068424 549
58 3300005457 Ga0070662_100064651 Ga0070662_1000646512 550
59 3300005535 Ga0070684_100005537 Ga0070684_1000055372 550
60 3300005548 Ga0070665_100000582 Ga0070665_10000058240 550
61 3300009098 Ga0105245_10001813 Ga0105245_1000181313 550
62 3300009177 Ga0105248_10094833 Ga0105248_100948332 550
63 3300010375 Ga0105239_10021004 Ga0105239_100210044 550
64 3300013105 Ga0157369_10067701 Ga0157369_100677012 550
65 3300013308 Ga0157375_10015822 Ga0157375_100158229 550
66 3300026095 Ga0207676_10139586 Ga0207676_101395861 550
67 3300028379 Ga0268266_10009210 Ga0268266_1000921010 550
68 3300045976 Ga0466967_0005452 Ga0466967_0005452_2158_4032 550
69 3300047319 Ga0495674_0071232 Ga0495674_0071232_405_2282 550
70 3300048914 Ga0496111_0042487 Ga0496111_0042487_704_2599 550
71 3300049586 Ga0501070_0033882 Ga0501070_0033882_2182_4068 550
72 iso_pu_bacteria 2582580736 2583151023 550
73 iso_pu_bacteria 8056207758 8056215829 550
74 3300005329 Ga0070683_100040096 Ga0070683_1000400963 551
75 3300009148 Ga0105243_10001854 Ga0105243_100018544 551
76 3300025935 Ga0207709_10001964 Ga0207709_1000196413 551
77 3300025944 Ga0207661_10027592 Ga0207661_100275924 551
78 3300045976 Ga0466967_0001989 Ga0466967_0001989_6262_8142 551
79 3300048903 Ga0496100_0026059 Ga0496100_0026059_1008_2912 551
80 3300048917 Ga0496114_0010538 Ga0496114_0010538_2505_4409 551
81 3300048918 Ga0496115_0000835 Ga0496115_0000835_18719_20623 551
82 3300049586 Ga0501070_0000088 Ga0501070_0000088_36808_38721 551
83 3300049586 Ga0501070_0003335 Ga0501070_0003335_1672_3543 551
84 3300049590 Ga0501074_0047989 Ga0501074_0047989_1098_2969 551
85 iso_pu_bacteria 2565956761 2566994126 551
86 iso_pu_bacteria 2738543005 2739203447 551
87 iso_pu_bacteria 2904535858 2904539895 551
88 iso_pu_bacteria 2922554459 2922560465 551
89 iso_pu_bacteria 2974315732 2974316945 551
90 iso_pu_bacteria 2984523437 2984525132 551
91 3300005530 Ga0070679_100008391 Ga0070679_1000083918 552
92 3300005834 Ga0068851_10000003 Ga0068851_1000000385 552
93 3300005985 Ga0081539_10008774 Ga0081539_100087745 552
94 3300009545 Ga0105237_10000131 Ga0105237_1000013185 552
95 3300010375 Ga0105239_10132262 Ga0105239_101322621 552
96 3300025321 Ga0207656_10000002 Ga0207656_10000002152 552
97 3300025914 Ga0207671_10000002 Ga0207671_10000002446 552
98 3300025921 Ga0207652_10009413 Ga0207652_100094138 552
99 3300025924 Ga0207694_10000092 Ga0207694_1000009250 552
100 3300031691 Ga0316579_10000202 Ga0316579_100002027 552
101 3300049569 Ga0501032_0048694 Ga0501032_0048694_301_2307 552
102 3300049571 Ga0501034_0001812 Ga0501034_0001812_20753_22708 552
103 3300049580 Ga0501046_0001751 Ga0501046_0001751_7360_9315 552
104 3300049582 Ga0501048_0026233 Ga0501048_0026233_404_2359 552
105 3300049586 Ga0501070_0001639 Ga0501070_0001639_7086_9041 552
106 3300049823 Ga0501044_0004719 Ga0501044_0004719_7986_9941 552
107 iso_pu_bacteria 2622736605 2623499799 552
108 iso_pu_bacteria 2643221641 2644230568 552
109 iso_pu_bacteria 2643221679 2644443915 552
110 iso_pu_bacteria 2932431166 2932433012 552
111 3300005843 Ga0068860_100000669 Ga0068860_10000066932 553
112 3300028381 Ga0268264_10000510 Ga0268264_1000051022 553
113 3300044842 Ga0466957_0085836 Ga0466957_0085836_17_1954 553
114 3300045976 Ga0466967_0001691 Ga0466967_0001691_11003_12940 553
115 3300048917 Ga0496114_0007711 Ga0496114_0007711_703_2583 553
116 3300048929 Ga0496126_0114973 Ga0496126_0114973_313_2193 553
117 iso_pu_bacteria 2935890801 2935891785 553
118 3300005329 Ga0070683_100002038 Ga0070683_1000020385 554
119 3300005564 Ga0070664_100029028 Ga0070664_1000290282 554
120 3300005577 Ga0068857_100034532 Ga0068857_1000345323 554
121 3300006846 Ga0075430_100069557 Ga0075430_1000695572 554
122 3300009147 Ga0114129_10022776 Ga0114129_100227765 554
123 3300009147 Ga0114129_10258115 Ga0114129_102581152 554
124 3300025944 Ga0207661_10002262 Ga0207661_1000226211 554
125 3300026116 Ga0207674_10048632 Ga0207674_100486323 554
126 3300037418 Ga0395900_0086749 Ga0395900_0086749_206_2056 554
127 3300037466 Ga0395898_0000752 Ga0395898_0000752_19030_20913 554
128 3300038443 Ga0395901_0017179 Ga0395901_0017179_3326_5176 554
129 3300050507 nmdc:mga05p37_17148_c1 nmdc:mga05p37_17148_c1_3150_5000 554
130 3300053080 Ga0500635_0000013 Ga0500635_0000013_88039_89895 554
131 iso_pu_bacteria 2795385472 2795797897 554
132 iso_pu_bacteria 2891395885 2891399716 554
133 3300005327 Ga0070658_10001194 Ga0070658_1000119417 555
134 3300005327 Ga0070658_10007242 Ga0070658_100072422 555
135 3300006048 Ga0075363_100003362 Ga0075363_1000033624 555
136 3300006353 Ga0075370_10009899 Ga0075370_100098996 555
137 3300013105 Ga0157369_10017129 Ga0157369_100171297 555
138 3300025909 Ga0207705_10007121 Ga0207705_100071213 555
139 3300025909 Ga0207705_10026371 Ga0207705_100263711 555
140 3300025913 Ga0207695_10083800 Ga0207695_100838002 555
141 3300025949 Ga0207667_10054762 Ga0207667_100547623 555
142 3300031665 Ga0316575_10000005 Ga0316575_1000000517 555
143 3300031727 Ga0316576_10003362 Ga0316576_100033625 555
144 3300037418 Ga0395900_0027389 Ga0395900_0027389_2480_4333 555
145 3300037853 Ga0436364_1150565 Ga0436364_1150565_1065_2972 555
146 3300039437 Ga0436365_0548618 Ga0436365_0548618_33027_34934 555
147 3300044693 Ga0466961_0028948 Ga0466961_0028948_914_2782 555
148 3300044694 Ga0466963_0024326 Ga0466963_0024326_919_2793 555
149 3300044694 Ga0466963_0043284 Ga0466963_0043284_579_2447 555
150 3300044842 Ga0466957_0001131 Ga0466957_0001131_836_2719 555
151 3300044901 Ga0466960_0001114 Ga0466960_0001114_3829_5781 555
152 3300045836 Ga0466958_0006197 Ga0466958_0006197_593_2476 555
153 3300045836 Ga0466958_0014425 Ga0466958_0014425_1471_3345 555
154 3300045976 Ga0466967_0003169 Ga0466967_0003169_3679_5631 555
155 3300045976 Ga0466967_0058526 Ga0466967_0058526_651_2519 555
156 3300045976 Ga0466967_0082458 Ga0466967_0082458_454_2304 555
157 3300046455 Ga0495603_0006431 Ga0495603_0006431_4322_6217 555
158 3300046616 Ga0495668_0000043 Ga0495668_0000043_77665_79590 555
159 3300047321 Ga0495676_0029074 Ga0495676_0029074_1719_3584 555
160 3300048929 Ga0496126_0000339 Ga0496126_0000339_49344_51206 555
161 3300048929 Ga0496126_0017230 Ga0496126_0017230_3786_5732 555
162 3300050490 nmdc:mga03n38_9129_c1 nmdc:mga03n38_9129_c1_1048_2973 555
163 3300050496 nmdc:mga07m45_7797_c1 nmdc:mga07m45_7797_c1_1322_3247 555
164 iso_pu_bacteria 2738541308 2738889694 555
165 3300005366 Ga0070659_100005705 Ga0070659_1000057058 556
166 3300005466 Ga0070685_10008233 Ga0070685_100082334 556
167 3300005577 Ga0068857_100014689 Ga0068857_1000146898 556
168 3300005841 Ga0068863_100103828 Ga0068863_1001038282 556
169 3300005842 Ga0068858_100001363 Ga0068858_10000136310 556
170 3300009098 Ga0105245_10007950 Ga0105245_100079504 556
171 3300009098 Ga0105245_10048640 Ga0105245_100486402 556
172 3300009177 Ga0105248_10003592 Ga0105248_100035922 556
173 3300009545 Ga0105237_10068893 Ga0105237_100688931 556
174 3300014325 Ga0163163_10051450 Ga0163163_100514502 556
175 3300025909 Ga0207705_10025248 Ga0207705_100252484 556
176 3300025911 Ga0207654_10000001 Ga0207654_100000011703 556
177 3300025913 Ga0207695_10027587 Ga0207695_100275874 556
178 3300025932 Ga0207690_10001146 Ga0207690_1000114617 556
179 3300025941 Ga0207711_10013846 Ga0207711_100138462 556
180 3300025941 Ga0207711_10018694 Ga0207711_100186945 556
181 3300025949 Ga0207667_10008720 Ga0207667_100087203 556
182 3300026035 Ga0207703_10000031 Ga0207703_1000003125 556
183 3300026041 Ga0207639_10033502 Ga0207639_100335022 556
184 3300026088 Ga0207641_10141764 Ga0207641_101417641 556
185 3300026142 Ga0207698_10000604 Ga0207698_1000060417 556
186 3300044684 Ga0466966_0056627 Ga0466966_0056627_519_2414 556
187 3300046460 Ga0495638_0004981 Ga0495638_0004981_562_2487 556
188 3300046471 Ga0495650_0007446 Ga0495650_0007446_907_2862 556
189 3300048917 Ga0496114_0076690 Ga0496114_0076690_843_2744 556
190 3300048918 Ga0496115_0096578 Ga0496115_0096578_80_2011 556
191 3300048920 Ga0496117_0009340 Ga0496117_0009340_2048_3979 556
192 3300048923 Ga0496120_0018578 Ga0496120_0018578_699_2627 556
193 3300048929 Ga0496126_0012238 Ga0496126_0012238_5066_6997 556
194 3300050492 nmdc:mga0yw44_8638_c2 nmdc:mga0yw44_8638_c2_1622_3553 556
195 3300053093 Ga0500651_0000300 Ga0500651_0000300_17603_19534 556
196 3300053148 Ga0500590_005209 Ga0500590_005209_1776_3707 556
197 3300053155 Ga0500620_000060 Ga0500620_000060_7447_9366 556
198 3300053158 Ga0500627_0028025 Ga0500627_0028025_363_2294 556
199 3300053730 Ga0500645_000211 Ga0500645_000211_2248_4179 556
200 iso_pu_bacteria 2738541274 2738703684 556
201 iso_pu_bacteria 2738543028 2739330566 556
202 iso_pu_bacteria 2902799365 2902799596 556
203 3300044901 Ga0466960_0011283 Ga0466960_0011283_774_2681 557
204 3300003760 Ga0055527_1000001 Ga0055527_1000001189 562
205 3300003763 Ga0055529_1000018 Ga0055529_1000018307 562
206 3300025228 Ga0209672_100006 Ga0209672_100006787 562
207 3300025229 Ga0209147_100766 Ga0209147_10076615 562
208 3300025254 Ga0209148_1000015 Ga0209148_1000015631 562
209 3300025272 Ga0209455_1000013 Ga0209455_1000013631 562

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10410

DnaB_bind

DnaB-helicase binding domain of primase

508

563

0.97

PF08275

DNAG_N

DNA primase catalytic core, N-terminal domain

260

387

0.96

PF01807

zf-CHC2

CHC2 zinc finger

138

236

0.94

PF08278

DnaG_DnaB_bind

DNA primase DnaG DnaB-binding

602

729

0.91

PF13155

Toprim_2

Toprim-like

397

489

0.89

PF13662

Toprim_4

Toprim domain

394

477

0.86

PF01751

Toprim

Toprim domain

395

478

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1d0q-assembly1.cif.gz_B structure of the zinc-binding domain of bacillus stearothermophilus dna primase 0.9598 2 97
5w33-assembly1.cif.gz_A crystal structure of the rna polymerase domain (rpd) of mycobacterium tuberculosis primase dnag 0.947 103 392
5w34-assembly1.cif.gz_A crystal structure of the rna polymerase domain (rpd) of mycobacterium tuberculosis primase dnag in complex with double-stranded dna gaccggaagtgg 0.9095 103 398
5guj-assembly1.cif.gz_A crystal structure of the bacillus subtilis dnag rna polymerase domain, natural degradation of full length dnag 0.9043 103 409
5w36-assembly1.cif.gz_A crystal structure of the rna polymerase domain (rpd) of mycobacterium tuberculosis primase dnag in complex with a double-stranded dna oligomer with a 6-nucleotide overhang 0.9003 103 398
ID Description Score Start End Superfamily
af_P9WNW1_1_101_3.90.580.10 Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type?domain 0.9688 1 100 3.90.580.10
5w33A01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.9555 103 213 3.90.980.10
af_P9WNW1_1_101_3.90.580.10 Alpha Beta;Alpha-Beta Complex;DNA Primase; Chain A;Zinc finger, CHC2-type?domain 0.9501 1 100 3.90.580.10
af_P9WNW1_244_373_3.40.1360.10 Alpha Beta;3-Layer(aba) Sandwich;Dna Topoisomerase Vi A Subunit; Chain: A, domain 2; 0.912 215 342 3.40.1360.10
5gujA01 Alpha Beta;Alpha-Beta Complex;DNA primase DNAg catalytic core, N-terminal domain;DNA primase, catalytic core, N-terminal domain 0.9073 103 213 3.90.980.10
ID Description Score Start End GO Terms
AF-W3Y5L9-F1-model_v4 deleted 0.9804 6 97
AF-A0A3D5UVF1-F1-model_v4 DNA primase 0.9756 10 89 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-R7J3F3-F1-model_v4 DNA primase 0.9717 11 93 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A2H0SRN6-F1-model_v4 DNA primase 0.9709 10 97 GO:0003677
GO:0003896
GO:0005737
GO:0008270
AF-A0A3N5K9J1-F1-model_v4 DNA primase 0.9561 5 106 GO:0003677
GO:0003896
GO:0005737
GO:0008270

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pLDDT pTM Quality
86.38 0.6 Medium
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Predicted Structure (AlphaFold2)

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