F319346

General Info

Members Datasets Scaffolds Average Seq Length
209 130 418 427

Family's Representative Sequence

Representative Sequence 3300036647|Ga0316582_0092807|Ga0316582_0092807_143_1582
Length 465
Sequence MVPVPRIPSQQREAQGKPPKYACDLMLALGPLQKVRGIQESETMYESIRSIWAVRSVRRKLLFTLGILIIFRMAAHVPVPGVDREALRQVLDPVRPAGGVRQLIGLLDLLSGGLVANFSVMAMGVYPYVSASIVFSVLQPLIPRLRELAREEEAGRNRLNQYQLYLTLPLAALQAIMQIRLLETAAGIPIIQGFGLDLTGITTVLTMTAGTMFAVWLGELITERGIGNGLSIIIFGGIVARMPQNVATIYARDGWSGLLLFQEGQRRIPVRYGKRVRGRKILGGQTSYIPLRVNTAGMIPLIFAQTFLTFPATIAQFFARPAAQRPNLANRIFDLFSGRSTWYWLLLFVLVVAFTFFYTDIMLQQQDLAGSLQRQGGFIPGIRPGDNTAHYIDRVMHRITLAGALFLGAVAVLPGVIGILRGEPSGNPTMLISSAGLLIVVGVVVDTVRQLEAHVLMHRYEGFFK

Samples

Sample ID Description Type Environment
1 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
2 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
3 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
18 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
22 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
23 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009828 Sorghum rhizosphere soil microbial communities in Albany, CA(condition:control)- sample E Metatranscriptome Rhizosphere
26 3300009829 Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D Metatranscriptome Rhizosphere
27 3300009835 Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample B Metatranscriptome Rhizosphere
28 3300009850 Sorghum rhizosphere soil microbial communities in Albany, CA (condition:control)- sample C Metatranscriptome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
36 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
39 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
40 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
42 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
43 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
53 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
54 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
55 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
56 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
57 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
58 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
59 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
60 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
61 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
62 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
63 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
64 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
65 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
66 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
68 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
69 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
74 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
75 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
76 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
77 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
78 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
82 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
83 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
84 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
87 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
90 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
103 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
104 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
105 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
108 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
109 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
110 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
111 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
117 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
118 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
119 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
123 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
124 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
125 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
126 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
127 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
128 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
129 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
130 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.6
Metatranscriptomes 13.4
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.78
Nodule 0
Rhizoplane 0
Rhizosphere 90.43
Stem 0
Stem Tuber 0
Unclassified 4.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316582_0092807 3300036647 Bacteria 1990
2 Ga0058863_10081680 3300004799 Bacteria 8733
3 Ga0058861_11846142 3300004800 Bacteria 2870
4 Ga0058862_10112198 3300004803 Bacteria 2774
5 Ga0058862_10176130 3300004803 Bacteria 9071
6 Ga0070658_10202027 3300005327 Bacteria 1677
7 Ga0070683_100003081 3300005329 Bacteria 13424
8 Ga0070680_100005522 3300005336 Bacteria 9570
9 Ga0070681_10005386 3300005458 Bacteria 12351
10 Ga0070706_100001548 3300005467 Bacteria 24042
11 Ga0070706_100011793 3300005467 Bacteria 8112
12 Ga0070706_100068573 3300005467 Bacteria 3280
13 Ga0070698_100044478 3300005471 Bacteria 4546
14 Ga0070679_100009896 3300005530 Bacteria 9022
15 Ga0070679_100010903 3300005530 Bacteria 8636
16 Ga0070679_100026987 3300005530 Bacteria 5648
17 Ga0070695_100005251 3300005545 Bacteria 7628
18 Ga0068857_100006631 3300005577 Bacteria 9944
19 Ga0068856_100005023 3300005614 Bacteria 13099
20 Ga0075365_10020034 3300006038 Unclassified 4140
21 Ga0075364_10001208 3300006051 Bacteria 13870
22 Ga0075362_10043559 3300006177 Bacteria 1987
23 Ga0075366_10031389 3300006195 Bacteria 3126
24 Ga0075430_100001741 3300006846 Bacteria 17785
25 Ga0075429_100012040 3300006880 Bacteria 7496
26 Ga0099794_10000179 3300007265 Bacteria 23076
27 Ga0105240_10010064 3300009093 Bacteria 13315
28 Ga0111539_10132172 3300009094 Bacteria 2922
29 Ga0111539_10543991 3300009094 Bacteria 1353
30 Ga0114129_10003653 3300009147 Bacteria 21641
31 Ga0114129_10145346 3300009147 Bacteria 3249
32 Ga0130087_1045189 3300009828 Bacteria 2405
33 Ga0130086_1054269 3300009829 Bacteria 2405
34 Ga0130084_1006194 3300009835 Bacteria 2405
35 Ga0130085_1020040 3300009850 Bacteria 2405
36 Ga0105246_10005769 3300011119 Bacteria 7552
37 Ga0157371_10085843 3300013102 Bacteria 2230
38 Ga0157369_10040109 3300013105 Bacteria 5113
39 Ga0157374_10007253 3300013296 Bacteria 9442
40 Ga0157378_10155388 3300013297 Bacteria 2135
41 Ga0163162_10083857 3300013306 Bacteria 3261
42 Ga0197907_10626046 3300020069 Bacteria 11771
43 Ga0197907_11150687 3300020069 Bacteria 3380
44 Ga0206356_11287527 3300020070 Bacteria 12032
45 Ga0206356_11883346 3300020070 Bacteria 18415
46 Ga0206349_1119855 3300020075 Bacteria 8453
47 Ga0206351_10616464 3300020077 Bacteria 1648
48 Ga0206350_10053488 3300020080 Bacteria 6099
49 Ga0206350_10091185 3300020080 Bacteria 1800
50 Ga0206350_11634370 3300020080 Bacteria 3866
51 Ga0206354_11557045 3300020081 Bacteria 2589
52 Ga0154015_1696088 3300020610 Bacteria 1974
53 Ga0224712_10000397 3300022467 Bacteria 8524
54 Ga0224712_10003758 3300022467 Bacteria 3997
55 Ga0224712_10005271 3300022467 Bacteria 3582
56 Ga0207684_10001602 3300025910 Bacteria 24043
57 Ga0207684_10022921 3300025910 Bacteria 5332
58 Ga0207684_10189395 3300025910 Bacteria 1774
59 Ga0207695_10041178 3300025913 Unclassified 4945
60 Ga0207693_10155887 3300025915 Bacteria 1796
61 Ga0207652_10173728 3300025921 Bacteria 1934
62 Ga0207661_10002899 3300025944 Bacteria 11851
63 Ga0207667_10019493 3300025949 Bacteria 7569
64 Ga0207702_10011131 3300026078 Bacteria 7507
65 Ga0207674_10011465 3300026116 Bacteria 9959
66 Ga0209588_1001434 3300027671 Bacteria 6234
67 Ga0265323_10005285 3300028653 Bacteria 5487
68 Ga0265323_10052962 3300028653 Bacteria 1434
69 Ga0265338_10007571 3300028800 Bacteria 13424
70 Ga0265338_10015264 3300028800 Bacteria 8457
71 Ga0265338_10025085 3300028800 Bacteria 6067
72 Ga0265338_10121073 3300028800 Bacteria 2086
73 Ga0265330_10002293 3300031235 Bacteria 10516
74 Ga0265330_10012998 3300031235 Unclassified 3886
75 Ga0265320_10026146 3300031240 Bacteria 3059
76 Ga0265340_10000015 3300031247 Bacteria 102635
77 Ga0265339_10021532 3300031249 Bacteria 3749
78 Ga0265316_10003456 3300031344 Bacteria 15971
79 Ga0265316_10004081 3300031344 Bacteria 14612
80 Ga0265316_10007431 3300031344 Bacteria 10325
81 Ga0265316_10053679 3300031344 Unclassified 3157
82 Ga0265316_10070427 3300031344 Bacteria 2697
83 Ga0316579_10004024 3300031691 Bacteria 5796
84 Ga0316579_10004271 3300031691 Bacteria 5662
85 Ga0316579_10029703 3300031691 Bacteria 2495
86 Ga0265342_10008253 3300031712 Bacteria 7497
87 Ga0265342_10040760 3300031712 Bacteria 2815
88 Ga0316576_10001658 3300031727 Bacteria 12188
89 Ga0316576_10002234 3300031727 Bacteria 10948
90 Ga0316576_10006107 3300031727 Bacteria 7455
91 Ga0316576_10024033 3300031727 Bacteria 4253
92 Ga0316578_10005682 3300031728 Bacteria 6073
93 Ga0316578_10066390 3300031728 Bacteria 2131
94 Ga0316577_10003304 3300031733 Bacteria 8124
95 Ga0316577_10008242 3300031733 Bacteria 5580
96 Ga0316577_10016358 3300031733 Bacteria 4087
97 Ga0316577_10056203 3300031733 Bacteria 2196
98 Ga0316577_10086602 3300031733 Bacteria 1753
99 Ga0316593_10000034 3300032168 Bacteria 14461
100 Ga0316593_10000072 3300032168 Bacteria 12236
101 Ga0316593_10036521 3300032168 Unclassified 1620
102 Ga0316588_1002950 3300033528 Bacteria 3034
103 Ga0316596_1000012 3300033541 Bacteria 16822
104 Ga0316596_1000126 3300033541 Bacteria 10161
105 Ga0373954_0003016 3300035118 Bacteria 7104
106 Ga0373956_0000071 3300035119 Bacteria 33353
107 Ga0316574_0007743 3300035398 Bacteria 5910
108 Ga0316574_0008459 3300035398 Bacteria 5716
109 Ga0316574_0014394 3300035398 Bacteria 4571
110 Ga0373927_0000098 3300035695 Bacteria 65705
111 Ga0373933_0008286 3300035724 Bacteria 5676
112 Ga0373933_0028467 3300035724 Bacteria 3224
113 Ga0316582_0012549 3300036647 Bacteria 4735
114 Ga0316582_0069886 3300036647 Unclassified 2271
115 Ga0316584_0002452 3300036712 Bacteria 11732
116 Ga0316584_0017224 3300036712 Bacteria 5190
117 Ga0316581_0014685 3300037588 Unclassified 2231
118 Ga0400484_04075 3300038725 Bacteria 8453
119 Ga0400490_37836 3300038726 Bacteria 7083
120 Ga0400485_00886 3300038735 Bacteria 7657
121 Ga0400486_32572 3300038742 Bacteria 2188
122 Ga0400489_29163 3300039093 Bacteria 29490
123 Ga0400489_57909 3300039093 Bacteria 4316
124 Ga0400489_75782 3300039093 Bacteria 4255
125 Ga0400489_87559 3300039093 Bacteria 5248
126 Ga0436365_1436184 3300039437 Bacteria 5972
127 Ga0436360_0120260 3300039438 Unclassified 2245
128 Ga0436363_1629326 3300039450 Bacteria 5016
129 Ga0451577_0000004 3300042876 Bacteria 816743
130 Ga0451577_0006913 3300042876 Bacteria 11215
131 Ga0451577_0144296 3300042876 Unclassified 2140
132 Ga0466969_0000188 3300044656 Bacteria 33204
133 Ga0453683_0000004 3300044673 Bacteria 759456
134 Ga0453683_0021485 3300044673 Bacteria 4120
135 Ga0453683_0095696 3300044673 Bacteria 1863
136 Ga0466965_0015985 3300044683 Bacteria 3566
137 Ga0466966_0001460 3300044684 Bacteria 15212
138 Ga0466964_0000286 3300044706 Bacteria 14798
139 Ga0453684_0000025 3300044712 Bacteria 818638
140 Ga0453684_0001027 3300044712 Bacteria 89253
141 Ga0453684_0012401 3300044712 Bacteria 14064
142 Ga0453684_0016038 3300044712 Bacteria 11762
143 Ga0466970_0000735 3300044765 Bacteria 15951
144 Ga0466959_0001979 3300045049 Bacteria 12901
145 Ga0451576_0000005 3300045051 Bacteria 1294643
146 Ga0451576_0013264 3300045051 Bacteria 9222
147 Ga0501031_0018151 3300049568 Bacteria 4577
148 Ga0501031_0112898 3300049568 Bacteria 1775
149 Ga0501033_0042905 3300049570 Bacteria 3371
150 Ga0501036_0032618 3300049572 Bacteria 4402
151 Ga0501036_0108187 3300049572 Bacteria 2351
152 Ga0501037_0006661 3300049573 Bacteria 8447
153 Ga0501038_0021196 3300049574 Bacteria 5838
154 Ga0501038_0151429 3300049574 Bacteria 1891
155 Ga0501039_0028940 3300049575 Bacteria 4266
156 Ga0501040_0014976 3300049576 Bacteria 5122
157 Ga0501042_0005622 3300049578 Bacteria 8084
158 Ga0501043_0009666 3300049579 Bacteria 7559
159 Ga0501046_0023218 3300049580 Bacteria 5104
160 Ga0501046_0049630 3300049580 Bacteria 3319
161 Ga0501068_0004300 3300049584 Bacteria 7733
162 Ga0501070_0046626 3300049586 Bacteria 3604
163 Ga0501070_0061954 3300049586 Bacteria 3099
164 Ga0501071_0015684 3300049587 Bacteria 5203
165 Ga0501071_0034165 3300049587 Bacteria 3617
166 Ga0501072_0021548 3300049588 Bacteria 4998
167 Ga0501072_0080173 3300049588 Bacteria 2586
168 Ga0501073_0088518 3300049589 Bacteria 2153
169 Ga0501074_0010825 3300049590 Bacteria 6623
170 Ga0501075_0012379 3300049591 Bacteria 6063
171 Ga0501075_0129216 3300049591 Bacteria 1924
172 Ga0501075_0162757 3300049591 Bacteria 1702
173 Ga0501076_0003279 3300049592 Bacteria 11337
174 Ga0501076_0018251 3300049592 Bacteria 5345
175 Ga0501076_0037653 3300049592 Bacteria 3794
176 Ga0501076_0143214 3300049592 Bacteria 1943
177 Ga0501077_0008023 3300049593 Bacteria 6527
178 Ga0501077_0022808 3300049593 Bacteria 3968
179 Ga0501079_0100423 3300049741 Bacteria 2243
180 Ga0501080_0159246 3300049742 Bacteria 2085
181 Ga0501081_0007571 3300049743 Bacteria 7042
182 Ga0501081_0035017 3300049743 Bacteria 3418
183 Ga0501083_0035679 3300049744 Bacteria 3396
184 Ga0501083_0062440 3300049744 Bacteria 2486
185 Ga0501035_0021108 3300049822 Bacteria 5988
186 Ga0501045_0014927 3300049824 Bacteria 5510
187 Ga0501045_0144559 3300049824 Bacteria 1769
188 nmdc:mga03683_24615_c1 3300050489 Bacteria 2357
189 nmdc:mga00v17_43_c1 3300050491 Bacteria 8881
190 nmdc:mga0yw44_36_c2 3300050492 Bacteria 31870
191 nmdc:mga05p37_138442_c1 3300050507 Bacteria 2983
192 nmdc:mga05p37_233797_c1 3300050507 Unclassified 2213
193 nmdc:mga05p37_397485_c1 3300050507 Bacteria 1610
194 nmdc:mga05p37_6288_c1 3300050507 Bacteria 13971
195 nmdc:mga09592_3850_c1 3300050508 Bacteria 12083
196 nmdc:mga0qj67_5215_c1 3300050509 Bacteria 9486
197 nmdc:mga06r32_1321_c1 3300050510 Bacteria 22359
198 nmdc:mga06r32_33873_c1 3300050510 Bacteria 4813
199 Ga0495619_0001971 3300053085 Bacteria 13691
200 Ga0500588_0036390 3300053146 Bacteria 1455
201 Ga0500616_0020388 3300053153 Bacteria 3725
202 Ga0500637_0043394 3300053178 Bacteria 2545
203 Ga0501084_0005747 3300054114 Bacteria 10202
204 Ga0501084_0119912 3300054114 Bacteria 2211
205 Ga0501082_0017990 3300060353 Bacteria 6086
206 Ga0501082_0157316 3300060353 Bacteria 1974
207 Ga0530510_0011262 3300061734 Bacteria 6274
208 Ga0530510_0014821 3300061734 Bacteria 5504
209 Ga0530510_0040095 3300061734 Bacteria 3379
210 Ga0316582_0092807
211 Ga0058863_10081680
212 Ga0058861_11846142
213 Ga0058862_10112198
214 Ga0058862_10176130
215 Ga0070658_10202027
216 Ga0070683_100003081
217 Ga0070680_100005522
218 Ga0070681_10005386
219 Ga0070706_100001548
220 Ga0070706_100011793
221 Ga0070706_100068573
222 Ga0070698_100044478
223 Ga0070679_100009896
224 Ga0070679_100010903
225 Ga0070679_100026987
226 Ga0070695_100005251
227 Ga0068857_100006631
228 Ga0068856_100005023
229 Ga0075365_10020034
230 Ga0075364_10001208
231 Ga0075362_10043559
232 Ga0075366_10031389
233 Ga0075430_100001741
234 Ga0075429_100012040
235 Ga0099794_10000179
236 Ga0105240_10010064
237 Ga0111539_10132172
238 Ga0111539_10543991
239 Ga0114129_10003653
240 Ga0114129_10145346
241 Ga0130087_1045189
242 Ga0130086_1054269
243 Ga0130084_1006194
244 Ga0130085_1020040
245 Ga0105246_10005769
246 Ga0157371_10085843
247 Ga0157369_10040109
248 Ga0157374_10007253
249 Ga0157378_10155388
250 Ga0163162_10083857
251 Ga0197907_10626046
252 Ga0197907_11150687
253 Ga0206356_11287527
254 Ga0206356_11883346
255 Ga0206349_1119855
256 Ga0206351_10616464
257 Ga0206350_10053488
258 Ga0206350_10091185
259 Ga0206350_11634370
260 Ga0206354_11557045
261 Ga0154015_1696088
262 Ga0224712_10000397
263 Ga0224712_10003758
264 Ga0224712_10005271
265 Ga0207684_10001602
266 Ga0207684_10022921
267 Ga0207684_10189395
268 Ga0207695_10041178
269 Ga0207693_10155887
270 Ga0207652_10173728
271 Ga0207661_10002899
272 Ga0207667_10019493
273 Ga0207702_10011131
274 Ga0207674_10011465
275 Ga0209588_1001434
276 Ga0265323_10005285
277 Ga0265323_10052962
278 Ga0265338_10007571
279 Ga0265338_10015264
280 Ga0265338_10025085
281 Ga0265338_10121073
282 Ga0265330_10002293
283 Ga0265330_10012998
284 Ga0265320_10026146
285 Ga0265340_10000015
286 Ga0265339_10021532
287 Ga0265316_10003456
288 Ga0265316_10004081
289 Ga0265316_10007431
290 Ga0265316_10053679
291 Ga0265316_10070427
292 Ga0316579_10004024
293 Ga0316579_10004271
294 Ga0316579_10029703
295 Ga0265342_10008253
296 Ga0265342_10040760
297 Ga0316576_10001658
298 Ga0316576_10002234
299 Ga0316576_10006107
300 Ga0316576_10024033
301 Ga0316578_10005682
302 Ga0316578_10066390
303 Ga0316577_10003304
304 Ga0316577_10008242
305 Ga0316577_10016358
306 Ga0316577_10056203
307 Ga0316577_10086602
308 Ga0316593_10000034
309 Ga0316593_10000072
310 Ga0316593_10036521
311 Ga0316588_1002950
312 Ga0316596_1000012
313 Ga0316596_1000126
314 Ga0373954_0003016
315 Ga0373956_0000071
316 Ga0316574_0007743
317 Ga0316574_0008459
318 Ga0316574_0014394
319 Ga0373927_0000098
320 Ga0373933_0008286
321 Ga0373933_0028467
322 Ga0316582_0012549
323 Ga0316582_0069886
324 Ga0316584_0002452
325 Ga0316584_0017224
326 Ga0316581_0014685
327 Ga0400484_04075
328 Ga0400490_37836
329 Ga0400485_00886
330 Ga0400486_32572
331 Ga0400489_29163
332 Ga0400489_57909
333 Ga0400489_75782
334 Ga0400489_87559
335 Ga0436365_1436184
336 Ga0436360_0120260
337 Ga0436363_1629326
338 Ga0451577_0000004
339 Ga0451577_0006913
340 Ga0451577_0144296
341 Ga0466969_0000188
342 Ga0453683_0000004
343 Ga0453683_0021485
344 Ga0453683_0095696
345 Ga0466965_0015985
346 Ga0466966_0001460
347 Ga0466964_0000286
348 Ga0453684_0000025
349 Ga0453684_0001027
350 Ga0453684_0012401
351 Ga0453684_0016038
352 Ga0466970_0000735
353 Ga0466959_0001979
354 Ga0451576_0000005
355 Ga0451576_0013264
356 Ga0501031_0018151
357 Ga0501031_0112898
358 Ga0501033_0042905
359 Ga0501036_0032618
360 Ga0501036_0108187
361 Ga0501037_0006661
362 Ga0501038_0021196
363 Ga0501038_0151429
364 Ga0501039_0028940
365 Ga0501040_0014976
366 Ga0501042_0005622
367 Ga0501043_0009666
368 Ga0501046_0023218
369 Ga0501046_0049630
370 Ga0501068_0004300
371 Ga0501070_0046626
372 Ga0501070_0061954
373 Ga0501071_0015684
374 Ga0501071_0034165
375 Ga0501072_0021548
376 Ga0501072_0080173
377 Ga0501073_0088518
378 Ga0501074_0010825
379 Ga0501075_0012379
380 Ga0501075_0129216
381 Ga0501075_0162757
382 Ga0501076_0003279
383 Ga0501076_0018251
384 Ga0501076_0037653
385 Ga0501076_0143214
386 Ga0501077_0008023
387 Ga0501077_0022808
388 Ga0501079_0100423
389 Ga0501080_0159246
390 Ga0501081_0007571
391 Ga0501081_0035017
392 Ga0501083_0035679
393 Ga0501083_0062440
394 Ga0501035_0021108
395 Ga0501045_0014927
396 Ga0501045_0144559
397 nmdc:mga03683_24615_c1
398 nmdc:mga00v17_43_c1
399 nmdc:mga0yw44_36_c2
400 nmdc:mga05p37_138442_c1
401 nmdc:mga05p37_233797_c1
402 nmdc:mga05p37_397485_c1
403 nmdc:mga05p37_6288_c1
404 nmdc:mga09592_3850_c1
405 nmdc:mga0qj67_5215_c1
406 nmdc:mga06r32_1321_c1
407 nmdc:mga06r32_33873_c1
408 Ga0495619_0001971
409 Ga0500588_0036390
410 Ga0500616_0020388
411 Ga0500637_0043394
412 Ga0501084_0005747
413 Ga0501084_0119912
414 Ga0501082_0017990
415 Ga0501082_0157316
416 Ga0530510_0011262
417 Ga0530510_0014821
418 Ga0530510_0040095

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00344

SecY

SecY

119

448

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5aww-assembly1.cif.gz_Y precise resting state of thermus thermophilus secyeg 0.8216 1 413
2zjs-assembly1.cif.gz_Y crystal structure of secye translocon from thermus thermophilus with a fab fragment 0.8158 1 410
5ch4-assembly1.cif.gz_Y peptide-bound state of thermus thermophilus secyeg 0.8142 7 413
2zqp-assembly1.cif.gz_Y crystal structure of secye translocon from thermus thermophilus 0.8124 1 409
5aww-assembly1.cif.gz_Y precise resting state of thermus thermophilus secyeg 0.8109 1 413
ID Description Score Start End Superfamily
af_O08387_1_424_1.10.3370.10 Mainly Alpha;Orthogonal Bundle;Preprotein translocase SecY subunit;SecY subunit domain 0.8747 1 413 1.10.3370.10
af_O08387_1_424_1.10.3370.10 Mainly Alpha;Orthogonal Bundle;Preprotein translocase SecY subunit;SecY subunit domain 0.8629 1 413 1.10.3370.10
af_P9WGN3_1_436_1.10.3370.10 Mainly Alpha;Orthogonal Bundle;Preprotein translocase SecY subunit;SecY subunit domain 0.8523 1 413 1.10.3370.10
af_P9WGN3_1_436_1.10.3370.10 Mainly Alpha;Orthogonal Bundle;Preprotein translocase SecY subunit;SecY subunit domain 0.841 1 413 1.10.3370.10
af_P0AGA2_15_429_1.10.3370.10 Mainly Alpha;Orthogonal Bundle;Preprotein translocase SecY subunit;SecY subunit domain 0.8367 13 413 1.10.3370.10
ID Description Score Start End GO Terms
AF-A0A536AMC0-F1-model_v4 Preprotein translocase subunit SecY 0.9687 1 177 GO:0015031
GO:0016020
AF-A0A536AMC0-F1-model_v4 Preprotein translocase subunit SecY 0.9527 1 177 GO:0015031
GO:0016020
AF-A0A5N9HJK9-F1-model_v4 Protein translocase subunit SecY 0.9464 2 190 GO:0015031
GO:0016020
AF-A0A496NMN6-F1-model_v4 deleted 0.9359 1 197
AF-A0A2W0F709-F1-model_v4 Preprotein translocase subunit SecY 0.9338 13 200 GO:0015031
GO:0016020

Map