F320161

General Info

Members Datasets Scaffolds Average Seq Length
210 132 419 820

Family's Representative Sequence

Representative Sequence 3300005843|Ga0068860_100015539|Ga0068860_1000155393
Length 937
Sequence MEKTLKNMMPVMAVEHDAILSKQGDITIAFMAELPELFTLSDRDYEAFHQAWIRAIKVLPPHCVCHKQDWFIDSKYKPNFAKAGDSFLSRSSEQFFNERPYLDHECFIFLTKKPAGRKVATSLFSNLLRNSIVPEQTLKPQMLQDFLDSVGQFKRILEDSGFIHLKRQKNEELVSHKNEAGIVERYCFLLENDKDLRIKDISYNGGIQIGNEYCQLYTIADGQDLPALCGSRINYDKYSTDKTKFSVGFASPLGQLLSCNHIYNQYIFIDDAQKTIQKLESKRLRLQSLSAYSRENTIGRDATNDFLNEAVSQQRLPVKAHFNILVWTENKEELKDLRNLVSSALTQMDAVPRQEVSGAPQIHWAGIPGNAADFPVNDTFDTFAEQACCFLNLETNYRSSVSPVGIRLGDRLSGKPVHVDISDEPMQKGICTNRNKFILGPSGSGKSFFTNHMVRSYFEQGTHVVLIDVGHSYKGLCNLVNGYYFTYNEKNPIKFNPFYIGEGDLLDTEKKESIKTLLLALWKKDNENFNRSEYVALSNALQLYYEHLEKDKNLFPCFNTFYEFLQTGFVQVLIDDKVKDKDFDVSNFLYVLRPYYKGGEFDYLLNATANLNLLQQRFIVFELDNIKDHPILFPVVTIIIMEVFISKMRKLKGVRKMILIEEAWKAIAKEGMAEYIKYLFKTVRKFFGEAIVVTQDVEDIISSPVVKQAIINNSDCKILLDQSKYQNKFDHVQELLGLTEKEKALVLSINKANDPSKKYKEVFISLGGMLSKVYRVEVSMEEYLAYTTEESEKVKVNEYSKKYGSMKKGIAALAAELRSGVLSVLLLFVWCMSCTNEVEDISGTYVHHSVNNMSIASDTVTIRSYNKGTYLIERRTGFNRVINGVLQTRLCKKENSIGVIDAGGTQLIEQKYGRIYAVSSSGSELMIGKATYKRIAP

Samples

Sample ID Description Type Environment
1 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
39 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
40 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
41 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
43 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
62 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
64 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
65 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
66 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
67 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
78 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
79 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
82 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
83 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
84 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
85 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
86 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
87 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
88 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
89 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
90 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
95 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
96 3300049761 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control Metagenome Rhizosphere
97 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
100 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
101 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
102 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
103 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
104 2511231000 Chryseobacterium populi CF314 Isolate Rhizosphere
105 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
106 2582581281 Chryseobacterium sp. CF284 Isolate Rhizosphere
107 2582581282 Chryseobacterium sp. CF299 Isolate Rhizosphere
108 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
109 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
110 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
111 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
112 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
113 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
114 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
115 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
116 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
117 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
118 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
119 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
120 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
121 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
122 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
123 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere
124 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
125 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
126 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
127 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
128 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
129 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
130 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
131 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
132 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.81
Metatranscriptomes 0
Isolates 16.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.52
Nodule 1.9
Rhizoplane 0.48
Rhizosphere 71.43
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068860_100015539 3300005843 Bacteria 7433
2 SwRhRL2b_contig_2732696 2162886007 Bacteria 84561
3 JGI24740J21852_10000174 3300001979 Bacteria 25728
4 rootH1_10002495 3300003316 Bacteria 67812
5 rootH2_10000091 3300003320 Bacteria 30060
6 rootH2_10128694 3300003320 Bacteria 5384
7 rootL2_10000574 3300003322 Bacteria 5479
8 rootL2_10022409 3300003322 Bacteria 13939
9 rootL2_10032710 3300003322 Bacteria 16561
10 rootH1_10000566 3300003316 Bacteria 33162
11 rootH1_10000566 3300003323 Bacteria 205679
12 rootH1_10000904 3300003323 Bacteria 75663
13 rootH1_10030659 3300003323 Bacteria 18564
14 rootH1_10038614 3300003323 Bacteria 23905
15 Ga0055531_10000077 3300003794 Bacteria 106111
16 Ga0055531_10000634 3300003794 Bacteria 30259
17 Ga0065165_1000142 3300005262 Bacteria 124889
18 Ga0065165_1001399 3300005262 Bacteria 26323
19 Ga0065704_10000205 3300005289 Bacteria 128899
20 Ga0065704_10000221 3300005289 Bacteria 134976
21 Ga0070658_10011615 3300005327 Bacteria 7064
22 Ga0070658_10017672 3300005327 Bacteria 5705
23 Ga0070680_100016020 3300005336 Bacteria 5891
24 Ga0070660_100002205 3300005339 Bacteria 13429
25 Ga0070659_100009098 3300005366 Bacteria 7286
26 Ga0070679_100000578 3300005530 Bacteria 31104
27 Ga0070679_100004956 3300005530 Bacteria 12287
28 Ga0068855_100000014 3300005563 Bacteria 232720
29 Ga0068855_100099545 3300005563 Bacteria 3348
30 Ga0068859_100007910 3300005617 Bacteria 10782
31 Ga0068863_100000100 3300005841 Bacteria 94010
32 Ga0081539_10000252 3300005985 Bacteria 124764
33 Ga0075366_10005971 3300006195 Bacteria 6630
34 Ga0097620_100007910 3300006931 Bacteria 10782
35 Ga0079104_1000005 3300006946 Bacteria 407099
36 Ga0079104_1000023 3300006946 Bacteria 219954
37 Ga0105240_10000129 3300009093 Bacteria 155768
38 Ga0105240_10060158 3300009093 Bacteria 4736
39 Ga0105240_10131395 3300009093 Bacteria 3003
40 Ga0105241_10016894 3300009174 Bacteria 5356
41 Ga0105237_10000496 3300009545 Bacteria 55702
42 Ga0105237_10001541 3300009545 Bacteria 30097
43 Ga0105238_10056210 3300009551 Bacteria 3949
44 Ga0105249_10013089 3300009553 Bacteria 7323
45 Ga0105239_10000006 3300010375 Bacteria 442319
46 Ga0105239_10116843 3300010375 Bacteria 2960
47 Ga0105239_10129740 3300010375 Bacteria 2803
48 Ga0105246_10000127 3300011119 Bacteria 35078
49 Ga0157373_10000002 3300013100 Bacteria 750094
50 Ga0157373_10000008 3300013100 Bacteria 216306
51 Ga0157371_10000433 3300013102 Bacteria 51401
52 Ga0157371_10001798 3300013102 Bacteria 21688
53 Ga0157371_10005882 3300013102 Bacteria 10245
54 Ga0157371_10006282 3300013102 Bacteria 9840
55 Ga0157371_10009278 3300013102 Bacteria 7760
56 Ga0157371_10015619 3300013102 Bacteria 5689
57 Ga0157371_10027532 3300013102 Bacteria 4123
58 Ga0157370_10000050 3300013104 Bacteria 123492
59 Ga0157370_10000153 3300013104 Bacteria 84822
60 Ga0157370_10000191 3300013104 Bacteria 76405
61 Ga0157370_10000212 3300013104 Bacteria 73900
62 Ga0157370_10001320 3300013104 Bacteria 30887
63 Ga0157370_10004028 3300013104 Bacteria 17072
64 Ga0157370_10007419 3300013104 Bacteria 11937
65 Ga0157369_10000216 3300013105 Bacteria 79927
66 Ga0157369_10007311 3300013105 Bacteria 12712
67 Ga0163162_10000080 3300013306 Bacteria 87784
68 Ga0163162_10003112 3300013306 Bacteria 15847
69 Ga0157372_10012071 3300013307 Bacteria 9200
70 Ga0157372_10014772 3300013307 Bacteria 8358
71 Ga0157372_10092548 3300013307 Bacteria 3439
72 Ga0157372_10092715 3300013307 Bacteria 3436
73 Ga0157379_10021781 3300014968 Bacteria 5677
74 Ga0157376_10060357 3300014969 Bacteria 3184
75 Ga0182006_1000100 3300015261 Bacteria 97114
76 Ga0182006_1004977 3300015261 Bacteria 6402
77 Ga0163161_10000007 3300017792 Bacteria 301614
78 Ga0209233_1000604 3300025261 Bacteria 18532
79 Ga0209676_1000116 3300025292 Bacteria 203383
80 Ga0209758_1000922 3300025297 Bacteria 39755
81 Ga0209758_1002149 3300025297 Bacteria 20731
82 Ga0209257_1000001 3300025304 Bacteria 2274655
83 Ga0209257_1000007 3300025304 Bacteria 1564415
84 Ga0207680_10000324 3300025903 Bacteria 22888
85 Ga0207647_10000140 3300025904 Bacteria 57457
86 Ga0207705_10003326 3300025909 Bacteria 12221
87 Ga0207705_10029273 3300025909 Bacteria 3926
88 Ga0207654_10001924 3300025911 Bacteria 10777
89 Ga0207654_10016828 3300025911 Bacteria 3813
90 Ga0207695_10000206 3300025913 Bacteria 162179
91 Ga0207695_10071135 3300025913 Bacteria 3553
92 Ga0207695_10100837 3300025913 Bacteria 2882
93 Ga0207671_10000157 3300025914 Bacteria 105839
94 Ga0207657_10016945 3300025919 Bacteria 7009
95 Ga0207652_10000027 3300025921 Bacteria 151000
96 Ga0207652_10000077 3300025921 Bacteria 106573
97 Ga0207652_10000327 3300025921 Bacteria 49170
98 Ga0207690_10000476 3300025932 Bacteria 25790
99 Ga0207667_10000049 3300025949 Bacteria 235027
100 Ga0207667_10047636 3300025949 Bacteria 4536
101 Ga0207667_10100330 3300025949 Bacteria 2986
102 Ga0207712_10010516 3300025961 Bacteria 5873
103 Ga0207712_10034791 3300025961 Bacteria 3417
104 Ga0207703_10002085 3300026035 Bacteria 17576
105 Ga0207678_10017847 3300026067 Bacteria 6232
106 Ga0207702_10085449 3300026078 Bacteria 2750
107 Ga0207641_10000013 3300026088 Bacteria 341378
108 Ga0207641_10000426 3300026088 Bacteria 48936
109 Ga0207676_10003410 3300026095 Bacteria 11238
110 Ga0207698_10015489 3300026142 Bacteria 5106
111 Ga0209281_1000037 3300027111 Bacteria 368555
112 Ga0209281_1000094 3300027111 Bacteria 238155
113 Ga0268264_10004370 3300028381 Bacteria 12062
114 Ga0307515_10000001 3300028794 Bacteria 4259510
115 Ga0307515_10000114 3300028794 Bacteria 194024
116 Ga0307515_10000203 3300028794 Bacteria 145242
117 Ga0307515_10000408 3300028794 Bacteria 103931
118 Ga0307515_10068404 3300028794 Bacteria 4879
119 Ga0307511_10000882 3300030521 Bacteria 31732
120 Ga0265327_10000526 3300031251 Bacteria 66051
121 Ga0307408_100000225 3300031548 Bacteria 60134
122 Ga0307408_100000573 3300031548 Bacteria 31741
123 Ga0307408_100001340 3300031548 Bacteria 18454
124 Ga0307405_10000021 3300031731 Bacteria 155876
125 Ga0307413_10001731 3300031824 Bacteria 8526
126 Ga0307414_10000264 3300032004 Bacteria 32949
127 Ga0307414_10003569 3300032004 Bacteria 8325
128 Ga0307414_10015698 3300032004 Bacteria 4579
129 Ga0307414_10053579 3300032004 Bacteria 2814
130 Ga0307507_10000141 3300033179 Bacteria 125001
131 Ga0307507_10001179 3300033179 Bacteria 58154
132 Ga0395899_0000001 3300037312 Bacteria 1750322
133 Ga0395899_0027018 3300037312 Bacteria 4328
134 Ga0395899_0060264 3300037312 Bacteria 2796
135 Ga0395900_0000048 3300037418 Bacteria 227760
136 Ga0395900_0002909 3300037418 Bacteria 18659
137 Ga0395898_0014874 3300037466 Bacteria 7988
138 Ga0395905_0020970 3300037471 Bacteria 6188
139 Ga0395901_0001896 3300038443 Bacteria 21588
140 Ga0395901_0009824 3300038443 Bacteria 9702
141 Ga0453684_0000297 3300044712 Bacteria 210507
142 Ga0495638_0000001 3300046460 Bacteria 1114121
143 Ga0495650_0000013 3300046471 Bacteria 611135
144 Ga0495607_0003490 3300046501 Bacteria 12033
145 Ga0495606_0018714 3300046507 Bacteria 5183
146 Ga0495606_0020369 3300046507 Bacteria 4893
147 Ga0495616_0013288 3300046513 Bacteria 4651
148 Ga0495643_0007177 3300046522 Bacteria 7227
149 Ga0495648_0000542 3300046524 Bacteria 40768
150 Ga0495633_0000167 3300046558 Bacteria 86373
151 Ga0495625_0018167 3300046660 Bacteria 5496
152 Ga0495686_0000277 3300047472 Bacteria 90929
153 Ga0495686_0002849 3300047472 Bacteria 15585
154 Ga0495686_0008950 3300047472 Bacteria 7272
155 Ga0496116_0000179 3300048919 Bacteria 126710
156 Ga0496122_0005678 3300048925 Bacteria 14728
157 Ga0496125_0000026 3300048928 Bacteria 397380
158 Ga0495678_010494 3300049459 Bacteria 4501
159 Ga0501034_0001371 3300049571 Bacteria 32769
160 Ga0501034_0002025 3300049571 Bacteria 25511
161 Ga0501043_0015130 3300049579 Bacteria 6036
162 Ga0501070_0009542 3300049586 Bacteria 8200
163 Ga0501223_000799 3300049663 Bacteria 7466
164 Ga0501249_000014 3300049679 Bacteria 137700
165 Ga0501264_000875 3300049761 Bacteria 3853
166 Ga0501269_000001 3300049766 Bacteria 122581
167 Ga0501044_0007050 3300049823 Bacteria 12366
168 nmdc:mga0k408_10408_c1 3300050493 Bacteria 5029
169 nmdc:mga0k408_7700_c1 3300050493 Bacteria 5757
170 Ga0500641_0000002 3300053096 Bacteria 291538
171 Ga0500641_0000045 3300053096 Bacteria 62494
172 Ga0500616_0000004 3300053153 Bacteria 1002714
173 Ga0500616_0025968 3300053153 Bacteria 3247
174 Ga0500616_0028519 3300053153 Bacteria 3075
175 Ga0500622_0000067 3300053156 Bacteria 124626
176 Ga0500624_000459 3300053157 Bacteria 12195
177 2511232105 2511231000 Bacteria 4488346
178 2522549004 2522125168 Bacteria 7376607
179 2585155952 2582581281 Bacteria 4487904
180 2585160124 2582581282 Bacteria 4495830
181 2599476696 2599185184 Bacteria 6430550
182 2644372471 2643221667 Bacteria 5627472
183 2644373063 2643221667 Bacteria 5627472
184 2644685922 2643221725 Bacteria 5087956
185 2738734611 2738541279 Bacteria 6149495
186 2738767370 2738541285 Bacteria 6150075
187 2739216193 2738543007 Bacteria 6149845
188 2740034474 2739367866 Bacteria 4215900
189 2881248376 2881247448 Bacteria 3717788
190 2884936826 2884933994 Bacteria 4535041
191 2890738998 2890737413 Bacteria 4269751
192 2902051850 2902048731 Bacteria 4976191
193 2903896983 2903895155 Bacteria 5258610
194 2904555994 2904555929 Bacteria 5218588
195 2904785300 2904780799 Bacteria 5840761
196 2919193650 2919191525 Bacteria 5765973
197 2919697716 2919692658 Bacteria 5943958
198 2928081491 2928078545 Bacteria 6534839
199 2928148234 2928147474 Bacteria 6512076
200 2932083129 2932082852 Bacteria 6563563
201 2958461063 2958458903 Bacteria 5301041
202 2958514024 2958512119 Bacteria 4528530
203 2958514649 2958512119 Bacteria 4528530
204 2977232160 2977232053 Bacteria 5485925
205 2977232220 2977232053 Bacteria 5485925
206 2977269088 2977268062 Bacteria 5243061
207 2977270140 2977268062 Bacteria 5243061
208 2977270836 2977268062 Bacteria 5243061
209 8055593519 8055592153 Bacteria 5961247
210 8056441621 8056440228 Bacteria 4946504
211 Ga0068860_100015539
212 SwRhRL2b_contig_2732696
213 JGI24740J21852_10000174
214 rootH1_10002495
215 rootH2_10000091
216 rootH2_10128694
217 rootL2_10000574
218 rootL2_10022409
219 rootL2_10032710
220 rootH1_10000566
221 rootH1_10000904
222 rootH1_10030659
223 rootH1_10038614
224 Ga0055531_10000077
225 Ga0055531_10000634
226 Ga0065165_1000142
227 Ga0065165_1001399
228 Ga0065704_10000205
229 Ga0065704_10000221
230 Ga0070658_10011615
231 Ga0070658_10017672
232 Ga0070680_100016020
233 Ga0070660_100002205
234 Ga0070659_100009098
235 Ga0070679_100000578
236 Ga0070679_100004956
237 Ga0068855_100000014
238 Ga0068855_100099545
239 Ga0068859_100007910
240 Ga0068863_100000100
241 Ga0081539_10000252
242 Ga0075366_10005971
243 Ga0097620_100007910
244 Ga0079104_1000005
245 Ga0079104_1000023
246 Ga0105240_10000129
247 Ga0105240_10060158
248 Ga0105240_10131395
249 Ga0105241_10016894
250 Ga0105237_10000496
251 Ga0105237_10001541
252 Ga0105238_10056210
253 Ga0105249_10013089
254 Ga0105239_10000006
255 Ga0105239_10116843
256 Ga0105239_10129740
257 Ga0105246_10000127
258 Ga0157373_10000002
259 Ga0157373_10000008
260 Ga0157371_10000433
261 Ga0157371_10001798
262 Ga0157371_10005882
263 Ga0157371_10006282
264 Ga0157371_10009278
265 Ga0157371_10015619
266 Ga0157371_10027532
267 Ga0157370_10000050
268 Ga0157370_10000153
269 Ga0157370_10000191
270 Ga0157370_10000212
271 Ga0157370_10001320
272 Ga0157370_10004028
273 Ga0157370_10007419
274 Ga0157369_10000216
275 Ga0157369_10007311
276 Ga0163162_10000080
277 Ga0163162_10003112
278 Ga0157372_10012071
279 Ga0157372_10014772
280 Ga0157372_10092548
281 Ga0157372_10092715
282 Ga0157379_10021781
283 Ga0157376_10060357
284 Ga0182006_1000100
285 Ga0182006_1004977
286 Ga0163161_10000007
287 Ga0209233_1000604
288 Ga0209676_1000116
289 Ga0209758_1000922
290 Ga0209758_1002149
291 Ga0209257_1000001
292 Ga0209257_1000007
293 Ga0207680_10000324
294 Ga0207647_10000140
295 Ga0207705_10003326
296 Ga0207705_10029273
297 Ga0207654_10001924
298 Ga0207654_10016828
299 Ga0207695_10000206
300 Ga0207695_10071135
301 Ga0207695_10100837
302 Ga0207671_10000157
303 Ga0207657_10016945
304 Ga0207652_10000027
305 Ga0207652_10000077
306 Ga0207652_10000327
307 Ga0207690_10000476
308 Ga0207667_10000049
309 Ga0207667_10047636
310 Ga0207667_10100330
311 Ga0207712_10010516
312 Ga0207712_10034791
313 Ga0207703_10002085
314 Ga0207678_10017847
315 Ga0207702_10085449
316 Ga0207641_10000013
317 Ga0207641_10000426
318 Ga0207676_10003410
319 Ga0207698_10015489
320 Ga0209281_1000037
321 Ga0209281_1000094
322 Ga0268264_10004370
323 Ga0307515_10000001
324 Ga0307515_10000114
325 Ga0307515_10000203
326 Ga0307515_10000408
327 Ga0307515_10068404
328 Ga0307511_10000882
329 Ga0265327_10000526
330 Ga0307408_100000225
331 Ga0307408_100000573
332 Ga0307408_100001340
333 Ga0307405_10000021
334 Ga0307413_10001731
335 Ga0307414_10000264
336 Ga0307414_10003569
337 Ga0307414_10015698
338 Ga0307414_10053579
339 Ga0307507_10000141
340 Ga0307507_10001179
341 Ga0395899_0000001
342 Ga0395899_0027018
343 Ga0395899_0060264
344 Ga0395900_0000048
345 Ga0395900_0002909
346 Ga0395898_0014874
347 Ga0395905_0020970
348 Ga0395901_0001896
349 Ga0395901_0009824
350 Ga0453684_0000297
351 Ga0495638_0000001
352 Ga0495650_0000013
353 Ga0495607_0003490
354 Ga0495606_0018714
355 Ga0495606_0020369
356 Ga0495616_0013288
357 Ga0495643_0007177
358 Ga0495648_0000542
359 Ga0495633_0000167
360 Ga0495625_0018167
361 Ga0495686_0000277
362 Ga0495686_0002849
363 Ga0495686_0008950
364 Ga0496116_0000179
365 Ga0496122_0005678
366 Ga0496125_0000026
367 Ga0495678_010494
368 Ga0501034_0001371
369 Ga0501034_0002025
370 Ga0501043_0015130
371 Ga0501070_0009542
372 Ga0501223_000799
373 Ga0501249_000014
374 Ga0501264_000875
375 Ga0501269_000001
376 Ga0501044_0007050
377 nmdc:mga0k408_10408_c1
378 nmdc:mga0k408_7700_c1
379 Ga0500641_0000002
380 Ga0500641_0000045
381 Ga0500616_0000004
382 Ga0500616_0025968
383 Ga0500616_0028519
384 Ga0500622_0000067
385 Ga0500624_000459
386 2511232105
387 2522549004
388 2585155952
389 2585160124
390 2599476696
391 2644372471
392 2644373063
393 2644685922
394 2738734611
395 2738767370
396 2739216193
397 2740034474
398 2881248376
399 2884936826
400 2890738998
401 2902051850
402 2903896983
403 2904555994
404 2904785300
405 2919193650
406 2919697716
407 2928081491
408 2928148234
409 2932083129
410 2958461063
411 2958514024
412 2958514649
413 2977232160
414 2977232220
415 2977269088
416 2977270140
417 2977270836
418 8055593519
419 8056441621

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19044

P-loop_TraG

TraG P-loop domain

405

817

1

PF12991

DUF3875

Domain of unknown function, B. Theta Gene description (DUF3875)

1

50

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ag5-assembly1.cif.gz_D structure of virb4 of thermoanaerobacter pseudethanolicus 0.7362 432 709
4ag6-assembly1.cif.gz_A structure of virb4 of thermoanaerobacter pseudethanolicus 0.7357 397 782
4ag6-assembly2.cif.gz_B structure of virb4 of thermoanaerobacter pseudethanolicus 0.7349 396 782
4kfu-assembly2.cif.gz_B structure of the genome packaging ntpase b204 from sulfolobus turreted icosahedral virus 2 in complex with amppcp 0.7313 434 777
4ag6-assembly2.cif.gz_B structure of virb4 of thermoanaerobacter pseudethanolicus 0.7298 396 782
ID Description Score Start End Superfamily
af_P39285_986_1078_3.30.70.100 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.7805 320 348 3.30.70.100
af_Q2G1I6_1_239_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7782 635 719 3.40.50.300
3fvqB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7221 657 722 3.40.50.300
af_Q2FWW7_2_234_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.721 633 721 3.40.50.300
4kftA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7133 434 778 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A096B5X2-F1-model_v4 deleted 0.9551 398 653
AF-A0A4Q5ND35-F1-model_v4 deleted 0.9468 387 817
AF-A0A015UC23-F1-model_v4 Conjugation system ATPase, TraG family protein 0.9413 1 664
AF-A0A642PKL4-F1-model_v4 TraG family conjugative transposon ATPase 0.9364 112 816
AF-A0A239LHB3-F1-model_v4 Bacteroides conjugation system ATPase, TraG family 0.9351 1 387

Map