F320653

General Info

Members Datasets Scaffolds Average Seq Length
210 188 420 251

Family's Representative Sequence

Representative Sequence 3300041451|Ga0451791_1591210|Ga0451791_1591210_25_828
Length 267
Sequence MNTSNGLVDLHCHLDLYPDHQAAVMDAEEAGVLTLAVTTTPRAWPRNHKLAQRTKHVRAALGLHPQLVAERASEIELWDRYLPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLQRCAEAGDKIITVHSVRAAKAVLDHVESFLPPSRGKLVLHWFTGSKAEAQRALELGCYFSINAAMLENERHAPTVALIPLDRLLTETDGPFTKTGERPSKPADVAVVVEALGRLHGMSTSAVAATIRANLRALLESNGGTKSDPLRSSGVASS

Samples

Sample ID Description Type Environment
1 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
4 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
7 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
8 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
9 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
10 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
11 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
12 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
27 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
28 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
29 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
54 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
55 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
57 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
79 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
80 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
81 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
82 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
83 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
84 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
85 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
86 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
87 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
93 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
98 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
99 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
100 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
101 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
102 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
103 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
104 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
105 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
106 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
107 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
108 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
109 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
110 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
111 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
112 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
113 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
114 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
115 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
116 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
117 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
118 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
119 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
120 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
121 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
122 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
134 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
135 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
136 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
137 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
138 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
139 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049850 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control Metagenome Rhizosphere
144 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
145 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
146 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
147 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
148 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
149 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
150 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
151 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
152 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
153 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
154 2509276019 Ensifer aridi TW10 Isolate Nodule
155 2513237102 Bradyrhizobium japonicum USDA 135 Isolate Nodule
156 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
157 2643221662 Devosia sp. Root413D1 Isolate Unclassified
158 2671180139 Chelativorans sp. A52C2 Isolate Unclassified
159 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
160 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
161 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
162 2791355196 Bradyrhizobium sp. Y36 Isolate Nodule
163 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
164 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
165 2869285874 Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 Isolate Nodule
166 2871429161 Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 Isolate Nodule
167 2874628541 Bradyrhizobium betae Opo-243 Isolate Unclassified
168 2878745973 Mesorhizobium sp. M2D.F.Ca.ET.226.01.1.1 Isolate Nodule
169 2879083081 Bradyrhizobium zhanjiangense CCBAU 51787 Isolate Unclassified
170 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
171 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
172 2894510363 Methylomonas sp. Kb3 Isolate Unclassified
173 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
174 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
175 2906308376 Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 Isolate Nodule
176 2906321335 Mesorhizobium sp. M2D.F.Ca.ET.206.01.1.1 Isolate Nodule
177 2931369376 Pseudomonas fluorescens DR133 Isolate Rhizosphere
178 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
179 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
180 2958130278 Mesorhizobium sp. M2D.F.Ca.ET.148.01.1.1 Isolate Nodule
181 2958179912 Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 Isolate Nodule
182 2960631154 Sinorhizobium medicae USDA1629 Isolate Nodule
183 2961077736 Mesorhizobium sp. M2D.F.Ca.ET.178.01.1.1 Isolate Nodule
184 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
185 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
186 8004387939 Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 Isolate Nodule
187 8004714634 Mesorhizobium sp. M2D.F.Ca.ET.153.01.1.1 Isolate Nodule
188 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 83.33
Metatranscriptomes 0
Isolates 16.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.33
Nodule 11.43
Rhizoplane 1.9
Rhizosphere 62.86
Stem 0
Stem Tuber 0
Unclassified 8.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451791_1591210 3300041451 Bacteria 1021
2 SwRhRL2b_contig_2933296 2162886007 Bacteria 42825
3 JGI25163J39215_1000019 3300002771 Bacteria 76007
4 JGI25164J39214_1000119 3300002772 Bacteria 75989
5 rootH1_10001211 3300003323 Bacteria 25141
6 Ga0055538_1000092 3300003751 Bacteria 75989
7 Ga0055539_1000137 3300003752 Bacteria 75989
8 Ga0055533_1000141 3300003756 Bacteria 75989
9 Ga0055525_1000185 3300003759 Bacteria 75989
10 Ga0055540_1000003 3300003792 Bacteria 428375
11 Ga0055541_1000090 3300003841 Bacteria 75989
12 Ga0065704_10070271 3300005289 Bacteria 42824
13 Ga0070670_100295023 3300005331 Bacteria 1417
14 Ga0070660_100002735 3300005339 Bacteria 12117
15 Ga0070668_100004078 3300005347 Bacteria 10820
16 Ga0070663_100000914 3300005455 Bacteria 16019
17 Ga0070681_10058134 3300005458 Bacteria 3847
18 Ga0070698_100356165 3300005471 Unclassified 1395
19 Ga0070679_100142424 3300005530 Bacteria 2376
20 Ga0070684_100031430 3300005535 Bacteria 4519
21 Ga0070665_100244723 3300005548 Bacteria 1794
22 Ga0068855_100373467 3300005563 Bacteria 1567
23 Ga0068852_100043849 3300005616 Bacteria 3795
24 Ga0068852_100623344 3300005616 Unclassified 1084
25 Ga0068860_100134407 3300005843 Bacteria 2375
26 Ga0070717_10665740 3300006028 Bacteria 945
27 Ga0075363_100000261 3300006048 Bacteria 15135
28 Ga0075432_10009704 3300006058 Bacteria 3277
29 Ga0070716_100000679 3300006173 Bacteria 14543
30 Ga0070712_100061400 3300006175 Bacteria 2655
31 Ga0070712_100479931 3300006175 Unclassified 1039
32 Ga0075430_100224575 3300006846 Unclassified 1558
33 Ga0075434_100234339 3300006871 Bacteria 1855
34 Ga0075429_100009152 3300006880 Bacteria 8599
35 Ga0075435_100111254 3300007076 Bacteria 2278
36 Ga0105251_10002856 3300009011 Bacteria 13048
37 Ga0105240_10139170 3300009093 Bacteria 2904
38 Ga0105240_10186403 3300009093 Bacteria 2443
39 Ga0105247_10075284 3300009101 Unclassified 2118
40 Ga0105243_10002940 3300009148 Bacteria 14090
41 Ga0105241_10005870 3300009174 Bacteria 9060
42 Ga0105248_10387844 3300009177 Bacteria 1573
43 Ga0105239_10113909 3300010375 Bacteria 2999
44 Ga0157378_10024958 3300013297 Bacteria 5264
45 Ga0163162_10002360 3300013306 Bacteria 17739
46 Ga0157372_10609846 3300013307 Bacteria 1272
47 Ga0182005_1008541 3300015265 Bacteria 3014
48 Ga0163161_10000646 3300017792 Bacteria 27776
49 Ga0213876_10005520 3300021384 Bacteria 6940
50 Ga0209760_100178 3300025207 Bacteria 33621
51 Ga0209784_100001 3300025224 Bacteria 3600592
52 Ga0209566_100001 3300025225 Bacteria 3600765
53 Ga0209674_100002 3300025226 Bacteria 3600592
54 Ga0209672_102364 3300025228 Bacteria 4743
55 Ga0209563_100002 3300025230 Bacteria 2045675
56 Ga0207427_100012 3300025231 Bacteria 585657
57 Ga0209437_100001 3300025233 Bacteria 2045675
58 Ga0209677_100002 3300025253 Bacteria 2045675
59 Ga0209233_1001515 3300025261 Bacteria 9113
60 Ga0209233_1022677 3300025261 Bacteria 1602
61 Ga0209565_1002929 3300025263 Bacteria 5812
62 Ga0209130_1001121 3300025284 Bacteria 19686
63 Ga0209051_1000011 3300025303 Bacteria 610828
64 Ga0209257_1001272 3300025304 Bacteria 30881
65 Ga0207710_10038446 3300025900 Unclassified 2115
66 Ga0207705_10056270 3300025909 Bacteria 2836
67 Ga0207654_10001900 3300025911 Bacteria 10842
68 Ga0207707_10045452 3300025912 Bacteria 3827
69 Ga0207695_10267990 3300025913 Bacteria 1604
70 Ga0207695_10286052 3300025913 Bacteria 1542
71 Ga0207693_10092318 3300025915 Bacteria 2373
72 Ga0207657_10003716 3300025919 Bacteria 16209
73 Ga0207652_10111062 3300025921 Bacteria 2431
74 Ga0207650_10281178 3300025925 Bacteria 1355
75 Ga0207709_10001134 3300025935 Bacteria 19451
76 Ga0207661_10334097 3300025944 Bacteria 1364
77 Ga0207667_10319058 3300025949 Bacteria 1587
78 Ga0207668_10000981 3300025972 Bacteria 17154
79 Ga0207678_10000992 3300026067 Bacteria 25874
80 Ga0207698_10003768 3300026142 Bacteria 9165
81 Ga0207428_10104062 3300027907 Bacteria 2191
82 Ga0265338_10010280 3300028800 Bacteria 11009
83 Ga0307509_10026395 3300031507 Bacteria 6478
84 Ga0307516_10239164 3300031730 Bacteria 1515
85 Ga0307413_10278663 3300031824 Bacteria 1256
86 Ga0307414_10000101 3300032004 Bacteria 62093
87 Ga0307510_10314802 3300033180 Unclassified 1023
88 Ga0373953_0040511 3300035117 Unclassified 1850
89 Ga0373955_0221896 3300035172 Unclassified 1129
90 Ga0373933_0161749 3300035724 Bacteria 1422
91 Ga0373937_0272849 3300036401 Bacteria 1597
92 Ga0373925_0006080 3300037068 Bacteria 8930
93 Ga0395899_0155386 3300037312 Bacteria 1619
94 Ga0395898_0006578 3300037466 Bacteria 12396
95 Ga0395901_0005936 3300038443 Bacteria 12367
96 Ga0436365_0792029 3300039437 Bacteria 3645
97 Ga0436365_1625446 3300039437 Bacteria 12586
98 Ga0436361_0862754 3300039447 Unclassified 1140
99 Ga0451807_2704153 3300041486 Bacteria 2096
100 Ga0451577_0000017 3300042876 Bacteria 523453
101 Ga0466969_0098038 3300044656 Bacteria 1382
102 Ga0453684_0000454 3300044712 Bacteria 165525
103 Ga0453684_0076501 3300044712 Bacteria 4202
104 Ga0453684_1235945 3300044712 Unclassified 782
105 Ga0451576_0000016 3300045051 Bacteria 565050
106 Ga0495627_014738 3300046453 Bacteria 2719
107 Ga0495629_0284030 3300046459 Unclassified 1135
108 Ga0495650_0001981 3300046471 Bacteria 17997
109 Ga0495585_0000460 3300046492 Bacteria 38920
110 Ga0495610_0000226 3300046512 Bacteria 60137
111 Ga0495616_0000586 3300046513 Bacteria 27352
112 Ga0495618_0145901 3300046514 Bacteria 1513
113 Ga0495637_0005692 3300046520 Bacteria 6321
114 Ga0495648_0046356 3300046524 Bacteria 2695
115 Ga0495597_0089641 3300046542 Bacteria 1307
116 Ga0495668_0006161 3300046616 Bacteria 7937
117 Ga0495661_0054456 3300046665 Bacteria 2402
118 Ga0495588_0038402 3300046674 Unclassified 2435
119 Ga0495613_0189993 3300046689 Unclassified 1452
120 Ga0495676_0000007 3300047321 Bacteria 276148
121 Ga0495683_0089288 3300047323 Bacteria 1495
122 Ga0495673_0029069 3300047469 Bacteria 2612
123 Ga0495684_0312231 3300047471 Unclassified 1126
124 Ga0496104_0000824 3300048907 Bacteria 26718
125 Ga0496105_0000078 3300048908 Bacteria 74087
126 Ga0496121_0008742 3300048924 Bacteria 11815
127 Ga0496124_0004755 3300048927 Bacteria 15640
128 Ga0496124_0004815 3300048927 Bacteria 15537
129 Ga0496125_0029733 3300048928 Bacteria 4903
130 Ga0496126_0043379 3300048929 Unclassified 4149
131 Ga0501031_0000005 3300049568 Bacteria 183960
132 Ga0501032_0000049 3300049569 Bacteria 105967
133 Ga0501033_0000129 3300049570 Bacteria 73102
134 Ga0501033_0011424 3300049570 Bacteria 6796
135 Ga0501034_0000560 3300049571 Bacteria 58880
136 Ga0501036_0000014 3300049572 Bacteria 148705
137 Ga0501037_0000042 3300049573 Bacteria 118407
138 Ga0501037_0014089 3300049573 Bacteria 5890
139 Ga0501038_0000024 3300049574 Bacteria 148705
140 Ga0501038_0000837 3300049574 Bacteria 27392
141 Ga0501038_0163528 3300049574 Bacteria 1807
142 Ga0501039_0000052 3300049575 Bacteria 95038
143 Ga0501039_0013584 3300049575 Bacteria 6228
144 Ga0501040_0011026 3300049576 Bacteria 5909
145 Ga0501043_0005947 3300049579 Bacteria 9813
146 Ga0501043_0028911 3300049579 Bacteria 4351
147 Ga0501047_0014556 3300049581 Bacteria 7484
148 Ga0501047_0035074 3300049581 Bacteria 4845
149 Ga0501047_0331926 3300049581 Bacteria 1359
150 Ga0501068_0002646 3300049584 Bacteria 9489
151 Ga0501070_0051408 3300049586 Bacteria 3421
152 Ga0501070_0589754 3300049586 Bacteria 887
153 Ga0501073_0000451 3300049589 Bacteria 28450
154 Ga0501074_0031326 3300049590 Bacteria 3853
155 Ga0501198_001511 3300049649 Bacteria 3056
156 Ga0501227_010693 3300049665 Bacteria 1992
157 Ga0501249_000658 3300049679 Bacteria 7889
158 Ga0501249_003945 3300049679 Bacteria 3002
159 Ga0501035_0000045 3300049822 Bacteria 148705
160 Ga0501044_0000044 3300049823 Bacteria 148705
161 Ga0501044_0003601 3300049823 Bacteria 17438
162 Ga0501044_0006368 3300049823 Bacteria 13048
163 Ga0501045_0247131 3300049824 Bacteria 1328
164 Ga0501204_000330 3300049850 Bacteria 3992
165 nmdc:mga03n38_39_c1 3300050490 Bacteria 28261
166 nmdc:mga05p37_7370_c1 3300050507 Bacteria 11065
167 nmdc:mga09592_7286_c1 3300050508 Bacteria 8988
168 nmdc:mga0qj67_315891_c1 3300050509 Unclassified 1265
169 nmdc:mga0n895_41497_c1 3300050512 Bacteria 4474
170 Ga0495619_0069813 3300053085 Bacteria 2349
171 Ga0495619_0131012 3300053085 Bacteria 1723
172 Ga0500618_016904 3300053125 Bacteria 1820
173 Ga0500652_013591 3300053131 Bacteria 2887
174 Ga0500616_0000179 3300053153 Bacteria 106124
175 Ga0590071_028963 3300059421 Unclassified 1316
176 2509379656 2509276019 Bacteria 6802256
177 2513706152 2513237102 Bacteria 7703324
178 2524541747 2524023228 Bacteria 10118060
179 2644350200 2643221662 Bacteria 5851492
180 2671692453 2671180139 Bacteria 4196045
181 2739348797 2738543031 Bacteria 5769731
182 2792583280 2791355082 Bacteria 5973319
183 2792841263 2791355137 Bacteria 9654227
184 2793062874 2791355196 Bacteria 7323613
185 2841957439 2841949485 Bacteria 8680857
186 2842512416 2842509118 Bacteria 6850950
187 2869287182 2869285874 Bacteria 6901219
188 2871430922 2871429161 Bacteria 6547891
189 2874635651 2874628541 Bacteria 8630250
190 2878747554 2878745973 Bacteria 6867388
191 2879090428 2879083081 Bacteria 8587928
192 2885389039 2885383462 Bacteria 9473874
193 2885409770 2885409591 Bacteria 9235467
194 2894513154 2894510363 Bacteria 5121143
195 2903503471 2903492973 Bacteria 13473544
196 2904625066 2904615490 Bacteria 10047340
197 2906309731 2906308376 Bacteria 6841989
198 2906322806 2906321335 Bacteria 6579571
199 2931375339 2931369376 Bacteria 6847892
200 2957430798 2957430029 Bacteria 7022557
201 2958053321 2958041894 Bacteria 13082850
202 2958131581 2958130278 Bacteria 6897202
203 2958181602 2958179912 Bacteria 6874908
204 2960637301 2960631154 Bacteria 6732508
205 2961079441 2961077736 Bacteria 7079850
206 2964629765 2964628898 Bacteria 7083044
207 2970064644 2970061556 Bacteria 7099761
208 8004388898 8004387939 Bacteria 7049250
209 8004715986 8004714634 Bacteria 6776161
210 8018134460 8018127388 Bacteria 7351159
211 Ga0451791_1591210
212 SwRhRL2b_contig_2933296
213 JGI25163J39215_1000019
214 JGI25164J39214_1000119
215 rootH1_10001211
216 Ga0055538_1000092
217 Ga0055539_1000137
218 Ga0055533_1000141
219 Ga0055525_1000185
220 Ga0055540_1000003
221 Ga0055541_1000090
222 Ga0065704_10070271
223 Ga0070670_100295023
224 Ga0070660_100002735
225 Ga0070668_100004078
226 Ga0070663_100000914
227 Ga0070681_10058134
228 Ga0070698_100356165
229 Ga0070679_100142424
230 Ga0070684_100031430
231 Ga0070665_100244723
232 Ga0068855_100373467
233 Ga0068852_100043849
234 Ga0068852_100623344
235 Ga0068860_100134407
236 Ga0070717_10665740
237 Ga0075363_100000261
238 Ga0075432_10009704
239 Ga0070716_100000679
240 Ga0070712_100061400
241 Ga0070712_100479931
242 Ga0075430_100224575
243 Ga0075434_100234339
244 Ga0075429_100009152
245 Ga0075435_100111254
246 Ga0105251_10002856
247 Ga0105240_10139170
248 Ga0105240_10186403
249 Ga0105247_10075284
250 Ga0105243_10002940
251 Ga0105241_10005870
252 Ga0105248_10387844
253 Ga0105239_10113909
254 Ga0157378_10024958
255 Ga0163162_10002360
256 Ga0157372_10609846
257 Ga0182005_1008541
258 Ga0163161_10000646
259 Ga0213876_10005520
260 Ga0209760_100178
261 Ga0209784_100001
262 Ga0209566_100001
263 Ga0209674_100002
264 Ga0209672_102364
265 Ga0209563_100002
266 Ga0207427_100012
267 Ga0209437_100001
268 Ga0209677_100002
269 Ga0209233_1001515
270 Ga0209233_1022677
271 Ga0209565_1002929
272 Ga0209130_1001121
273 Ga0209051_1000011
274 Ga0209257_1001272
275 Ga0207710_10038446
276 Ga0207705_10056270
277 Ga0207654_10001900
278 Ga0207707_10045452
279 Ga0207695_10267990
280 Ga0207695_10286052
281 Ga0207693_10092318
282 Ga0207657_10003716
283 Ga0207652_10111062
284 Ga0207650_10281178
285 Ga0207709_10001134
286 Ga0207661_10334097
287 Ga0207667_10319058
288 Ga0207668_10000981
289 Ga0207678_10000992
290 Ga0207698_10003768
291 Ga0207428_10104062
292 Ga0265338_10010280
293 Ga0307509_10026395
294 Ga0307516_10239164
295 Ga0307413_10278663
296 Ga0307414_10000101
297 Ga0307510_10314802
298 Ga0373953_0040511
299 Ga0373955_0221896
300 Ga0373933_0161749
301 Ga0373937_0272849
302 Ga0373925_0006080
303 Ga0395899_0155386
304 Ga0395898_0006578
305 Ga0395901_0005936
306 Ga0436365_0792029
307 Ga0436365_1625446
308 Ga0436361_0862754
309 Ga0451807_2704153
310 Ga0451577_0000017
311 Ga0466969_0098038
312 Ga0453684_0000454
313 Ga0453684_0076501
314 Ga0453684_1235945
315 Ga0451576_0000016
316 Ga0495627_014738
317 Ga0495629_0284030
318 Ga0495650_0001981
319 Ga0495585_0000460
320 Ga0495610_0000226
321 Ga0495616_0000586
322 Ga0495618_0145901
323 Ga0495637_0005692
324 Ga0495648_0046356
325 Ga0495597_0089641
326 Ga0495668_0006161
327 Ga0495661_0054456
328 Ga0495588_0038402
329 Ga0495613_0189993
330 Ga0495676_0000007
331 Ga0495683_0089288
332 Ga0495673_0029069
333 Ga0495684_0312231
334 Ga0496104_0000824
335 Ga0496105_0000078
336 Ga0496121_0008742
337 Ga0496124_0004755
338 Ga0496124_0004815
339 Ga0496125_0029733
340 Ga0496126_0043379
341 Ga0501031_0000005
342 Ga0501032_0000049
343 Ga0501033_0000129
344 Ga0501033_0011424
345 Ga0501034_0000560
346 Ga0501036_0000014
347 Ga0501037_0000042
348 Ga0501037_0014089
349 Ga0501038_0000024
350 Ga0501038_0000837
351 Ga0501038_0163528
352 Ga0501039_0000052
353 Ga0501039_0013584
354 Ga0501040_0011026
355 Ga0501043_0005947
356 Ga0501043_0028911
357 Ga0501047_0014556
358 Ga0501047_0035074
359 Ga0501047_0331926
360 Ga0501068_0002646
361 Ga0501070_0051408
362 Ga0501070_0589754
363 Ga0501073_0000451
364 Ga0501074_0031326
365 Ga0501198_001511
366 Ga0501227_010693
367 Ga0501249_000658
368 Ga0501249_003945
369 Ga0501035_0000045
370 Ga0501044_0000044
371 Ga0501044_0003601
372 Ga0501044_0006368
373 Ga0501045_0247131
374 Ga0501204_000330
375 nmdc:mga03n38_39_c1
376 nmdc:mga05p37_7370_c1
377 nmdc:mga09592_7286_c1
378 nmdc:mga0qj67_315891_c1
379 nmdc:mga0n895_41497_c1
380 Ga0495619_0069813
381 Ga0495619_0131012
382 Ga0500618_016904
383 Ga0500652_013591
384 Ga0500616_0000179
385 Ga0590071_028963
386 2509379656
387 2513706152
388 2524541747
389 2644350200
390 2671692453
391 2739348797
392 2792583280
393 2792841263
394 2793062874
395 2841957439
396 2842512416
397 2869287182
398 2871430922
399 2874635651
400 2878747554
401 2879090428
402 2885389039
403 2885409770
404 2894513154
405 2903503471
406 2904625066
407 2906309731
408 2906322806
409 2931375339
410 2957430798
411 2958053321
412 2958131581
413 2958181602
414 2960637301
415 2961079441
416 2964629765
417 2970064644
418 8004388898
419 8004715986
420 8018134460

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01026

TatD_DNase

TatD related DNase

8

249

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gg7-assembly1.cif.gz_A crystal structure of an uncharacterized metalloprotein from deinococcus radiodurans 0.9677 11 253
3gg7-assembly1.cif.gz_A crystal structure of an uncharacterized metalloprotein from deinococcus radiodurans 0.956 11 253
1zzm-assembly1.cif.gz_A crystal structure of yjjv, tatd homolog from escherichia coli k12, at 1.8 a resolution 0.8785 10 253
1yix-assembly2.cif.gz_B crystal structure of ycfh, tatd homolog from escherichia coli k12, at 1.9 a resolution 0.878 11 254
2y1h-assembly1.cif.gz_A crystal structure of the human tatd-domain protein 3 (tatdn3) 0.8767 11 253
ID Description Score Start End Superfamily
3gg7A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.9677 11 253 3.20.20.140
3gg7A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.956 11 253 3.20.20.140
af_P39408_1_259_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8937 10 255 3.20.20.140
af_I1MNS0_5_296_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8826 13 246 3.20.20.140
af_Q503T5_2_266_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.8825 8 253 3.20.20.140
ID Description Score Start End GO Terms
AF-M6VQ09-F1-model_v4 Hydrolase, TatD family 0.9938 11 252 GO:0016788
GO:0046872
AF-A0A841GGT3-F1-model_v4 deleted 0.9926 11 173
AF-A0A531KGV8-F1-model_v4 TatD family deoxyribonuclease 0.9917 81 252 GO:0016788
AF-A0A1G9IT47-F1-model_v4 TatD DNase family protein 0.9913 37 252 GO:0016788
GO:0046872
AF-A0A532AMK9-F1-model_v4 TatD family deoxyribonuclease 0.9893 43 185 GO:0016788

Map