F320704

General Info

Members Datasets Scaffolds Average Seq Length
210 121 420 424

Family's Representative Sequence

Representative Sequence 3300044735|Ga0466968_0007712|Ga0466968_0007712_256_1818
Length 482
Sequence MKSWEVGFSFEMKRLGSMARRGGRLLQFTAVVAMMATPAIAQNRPMAVPQAVTANQPRMPVPATGVAPDALAPTNPDFKADQNETAQAAPLPPPLPPVVWDVASAQELLAYIQQIGVEGLNPADYDPASLEAAIQTGNPAVISPIATEHFNQVSSDLALGHVKKPARIDWWVVDHDLDAQRQDSLLRAALAQHDLTGALNNLLPTHPQYAALKAALAETAASDTATRDRIRLNMDRWRWLPRDLGHKYIIVNVPGFHATLVEDGVNRWKQRAIAGKLSTPTPELNATATGVILNPWWEVPKSIEHEAAGKKGFVPVKGPDGTIQRWRQPPGPTNALGQIKFVMPNSKAIYLHDTNARSRFNDATRALSHGCVRTEHIMDLATELLGDDNGEWTPDKIQEALASKKTVQANFVKPLPVYIVYFSSAALNDGRIVDYKDLYGRDAKALAALKMKDGGASLTVPKPTDEVAGQASKPKAKSVAAR

Samples

Sample ID Description Type Environment
1 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
21 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
22 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
23 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
80 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
81 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
82 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
85 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
86 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
87 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
88 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
89 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
90 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
91 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
98 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
99 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
100 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
101 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
104 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
105 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
106 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
107 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
108 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
109 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
110 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
111 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
112 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
113 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
114 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
115 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
116 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
117 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
118 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
119 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
121 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber

Type Distribution

Type Percentage (%)
Metagenomes 99.52
Metatranscriptomes 0
Isolates 0.48

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.48
Nodule 0
Rhizoplane 1.9
Rhizosphere 97.14
Stem 0
Stem Tuber 0.48
Unclassified 1.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466968_0007712 3300044735 Bacteria 4098
2 JGI24740J21852_10001126 3300001979 Bacteria 12102
3 JGI24739J22299_10003769 3300001989 Bacteria 5785
4 JGI24738J21930_10008755 3300002075 Bacteria 2295
5 Ga0070658_10016931 3300005327 Bacteria 5834
6 Ga0070658_10018898 3300005327 Bacteria 5521
7 Ga0070658_10055284 3300005327 Bacteria 3225
8 Ga0070683_100024323 3300005329 Bacteria 5424
9 Ga0070670_100003949 3300005331 Bacteria 12373
10 Ga0070677_10036844 3300005333 Unclassified 1905
11 Ga0070666_10010746 3300005335 Bacteria 5728
12 Ga0070680_100005433 3300005336 Bacteria 9642
13 Ga0070680_100013778 3300005336 Bacteria 6307
14 Ga0070680_100046204 3300005336 Bacteria 3541
15 Ga0070682_100013855 3300005337 Bacteria 4649
16 Ga0070682_100044119 3300005337 Bacteria 2760
17 Ga0070660_100008261 3300005339 Bacteria 7275
18 Ga0070660_100032328 3300005339 Bacteria 3936
19 Ga0070660_100049434 3300005339 Bacteria 3233
20 Ga0070691_10003582 3300005341 Bacteria 7010
21 Ga0070661_100002313 3300005344 Bacteria 13086
22 Ga0070661_100056051 3300005344 Bacteria 2886
23 Ga0070675_100087324 3300005354 Unclassified 2608
24 Ga0070671_100002414 3300005355 Bacteria 14439
25 Ga0070671_100010165 3300005355 Bacteria 7553
26 Ga0070671_100034633 3300005355 Bacteria 4181
27 Ga0070673_100108190 3300005364 Bacteria 2301
28 Ga0070659_100005147 3300005366 Bacteria 9376
29 Ga0070659_100022023 3300005366 Bacteria 4863
30 Ga0070667_100004723 3300005367 Bacteria 11425
31 Ga0070667_100025529 3300005367 Bacteria 4912
32 Ga0070667_100030943 3300005367 Bacteria 4463
33 Ga0070714_100094827 3300005435 Bacteria 2620
34 Ga0070694_100083083 3300005444 Unclassified 2231
35 Ga0070663_100020150 3300005455 Bacteria 4412
36 Ga0070662_100048706 3300005457 Bacteria 3053
37 Ga0070662_100082664 3300005457 Bacteria 2395
38 Ga0070681_10010226 3300005458 Bacteria 9255
39 Ga0070679_100020612 3300005530 Bacteria 6428
40 Ga0070679_100044440 3300005530 Bacteria 4425
41 Ga0070679_100059591 3300005530 Bacteria 3804
42 Ga0070684_100002671 3300005535 Bacteria 13167
43 Ga0068853_100025015 3300005539 Bacteria 5010
44 Ga0068853_100057716 3300005539 Bacteria 3350
45 Ga0070672_100032433 3300005543 Bacteria 3941
46 Ga0070695_100045323 3300005545 Bacteria 2802
47 Ga0070665_100008330 3300005548 Bacteria 10484
48 Ga0070665_100012613 3300005548 Bacteria 8508
49 Ga0068855_100107983 3300005563 Bacteria 3197
50 Ga0068855_100124450 3300005563 Bacteria 2949
51 Ga0070664_100028797 3300005564 Bacteria 4625
52 Ga0070664_100040831 3300005564 Bacteria 3913
53 Ga0068857_100006614 3300005577 Bacteria 9955
54 Ga0068857_100011147 3300005577 Bacteria 7818
55 Ga0068854_100002116 3300005578 Bacteria 12177
56 Ga0068854_100030482 3300005578 Bacteria 3741
57 Ga0068856_100013400 3300005614 Bacteria 7938
58 Ga0068852_100005093 3300005616 Bacteria 9355
59 Ga0068852_100024286 3300005616 Bacteria 4896
60 Ga0068852_100183072 3300005616 Bacteria 1971
61 Ga0068864_100005056 3300005618 Bacteria 10799
62 Ga0068863_100001894 3300005841 Bacteria 20763
63 Ga0068860_100019963 3300005843 Bacteria 6496
64 Ga0068860_100033206 3300005843 Bacteria 4954
65 Ga0097621_100017473 3300006237 Bacteria 5447
66 Ga0075428_100083606 3300006844 Bacteria 3483
67 Ga0105240_10087322 3300009093 Bacteria 3819
68 Ga0114129_10199201 3300009147 Bacteria 2713
69 Ga0105241_10025711 3300009174 Bacteria 4376
70 Ga0105237_10021095 3300009545 Bacteria 6701
71 Ga0105238_10017635 3300009551 Bacteria 7257
72 Ga0157371_10044524 3300013102 Bacteria 3160
73 Ga0157370_10102132 3300013104 Bacteria 2685
74 Ga0157370_10105326 3300013104 Bacteria 2640
75 Ga0157369_10004619 3300013105 Bacteria 16188
76 Ga0157372_10121713 3300013307 Bacteria 2998
77 Ga0157372_10204882 3300013307 Bacteria 2286
78 Ga0207647_10007000 3300025904 Bacteria 8179
79 Ga0207647_10013062 3300025904 Bacteria 5769
80 Ga0207695_10008855 3300025913 Bacteria 12532
81 Ga0207695_10242624 3300025913 Bacteria 1703
82 Ga0207671_10044290 3300025914 Bacteria 3291
83 Ga0207660_10000484 3300025917 Bacteria 26514
84 Ga0207660_10003208 3300025917 Bacteria 10700
85 Ga0207657_10001678 3300025919 Bacteria 23887
86 Ga0207657_10006107 3300025919 Bacteria 12524
87 Ga0207657_10026360 3300025919 Bacteria 5343
88 Ga0207649_10006255 3300025920 Bacteria 6468
89 Ga0207694_10025296 3300025924 Bacteria 4511
90 Ga0207650_10032241 3300025925 Bacteria 3790
91 Ga0207700_10037272 3300025928 Bacteria 3519
92 Ga0207664_10036282 3300025929 Bacteria 3810
93 Ga0207644_10008225 3300025931 Bacteria 6833
94 Ga0207644_10021936 3300025931 Bacteria 4355
95 Ga0207690_10019381 3300025932 Bacteria 4188
96 Ga0207690_10046055 3300025932 Bacteria 2886
97 Ga0207690_10049577 3300025932 Bacteria 2800
98 Ga0207706_10016257 3300025933 Bacteria 6721
99 Ga0207706_10037830 3300025933 Bacteria 4283
100 Ga0207711_10146041 3300025941 Bacteria 2131
101 Ga0207661_10012640 3300025944 Bacteria 6145
102 Ga0207679_10002993 3300025945 Bacteria 10483
103 Ga0207679_10010992 3300025945 Bacteria 5841
104 Ga0207667_10004710 3300025949 Bacteria 16697
105 Ga0207667_10011328 3300025949 Bacteria 10368
106 Ga0207667_10026137 3300025949 Bacteria 6382
107 Ga0207667_10098704 3300025949 Bacteria 3013
108 Ga0207651_10012099 3300025960 Bacteria 4864
109 Ga0207651_10162924 3300025960 Bacteria 1750
110 Ga0207639_10001159 3300026041 Bacteria 17877
111 Ga0207678_10041698 3300026067 Bacteria 3979
112 Ga0207678_10044966 3300026067 Bacteria 3818
113 Ga0207702_10002063 3300026078 Bacteria 19455
114 Ga0207702_10020838 3300026078 Bacteria 5423
115 Ga0207702_10025794 3300026078 Bacteria 4879
116 Ga0207641_10005258 3300026088 Bacteria 11064
117 Ga0207676_10008296 3300026095 Bacteria 7383
118 Ga0207676_10093212 3300026095 Bacteria 2479
119 Ga0207674_10003678 3300026116 Bacteria 18711
120 Ga0207674_10005996 3300026116 Bacteria 14381
121 Ga0207674_10012374 3300026116 Bacteria 9538
122 Ga0207698_10000896 3300026142 Bacteria 17309
123 Ga0207698_10043850 3300026142 Bacteria 3355
124 Ga0207698_10070377 3300026142 Bacteria 2772
125 Ga0268266_10000767 3300028379 Bacteria 42918
126 Ga0268266_10163940 3300028379 Bacteria 2012
127 Ga0268265_10033852 3300028380 Bacteria 3719
128 Ga0268264_10001993 3300028381 Bacteria 18349
129 Ga0268264_10070292 3300028381 Bacteria 2963
130 Ga0307405_10001450 3300031731 Bacteria 9992
131 Ga0307405_10137028 3300031731 Bacteria 1701
132 Ga0307413_10000878 3300031824 Bacteria 10624
133 Ga0307410_10059083 3300031852 Bacteria 2616
134 Ga0307407_10012359 3300031903 Bacteria 4100
135 Ga0307407_10157274 3300031903 Bacteria 1484
136 Ga0307412_10014242 3300031911 Bacteria 4685
137 Ga0307412_10046929 3300031911 Bacteria 2833
138 Ga0307412_10054484 3300031911 Bacteria 2655
139 Ga0307412_10081414 3300031911 Bacteria 2239
140 Ga0307409_100023744 3300031995 Bacteria 4258
141 Ga0307409_100057780 3300031995 Bacteria 3008
142 Ga0307416_100024485 3300032002 Bacteria 4408
143 Ga0307416_100257554 3300032002 Bacteria 1703
144 Ga0307414_10067561 3300032004 Bacteria 2561
145 Ga0307411_10014210 3300032005 Bacteria 4422
146 Ga0307411_10015709 3300032005 Bacteria 4262
147 Ga0373943_0017839 3300035170 Bacteria 3253
148 Ga0373935_0029055 3300035692 Bacteria 3420
149 Ga0373933_0051686 3300035724 Unclassified 2457
150 Ga0373937_0010753 3300036401 Bacteria 8007
151 Ga0395899_0021048 3300037312 Bacteria 4946
152 Ga0395899_0189728 3300037312 Bacteria 1438
153 Ga0395900_0001132 3300037418 Bacteria 33674
154 Ga0395900_0030498 3300037418 Bacteria 5536
155 Ga0395900_0041278 3300037418 Bacteria 4756
156 Ga0395900_0073419 3300037418 Bacteria 3517
157 Ga0395900_0088171 3300037418 Bacteria 3189
158 Ga0395900_0218026 3300037418 Bacteria 1924
159 Ga0395898_0011721 3300037466 Bacteria 9089
160 Ga0395898_0087550 3300037466 Bacteria 3000
161 Ga0395905_0000083 3300037471 Bacteria 158407
162 Ga0395905_0000558 3300037471 Bacteria 50819
163 Ga0395905_0006135 3300037471 Bacteria 12132
164 Ga0395905_0008256 3300037471 Bacteria 10285
165 Ga0395905_0019523 3300037471 Bacteria 6424
166 Ga0395905_0062402 3300037471 Bacteria 3486
167 Ga0395905_0070249 3300037471 Bacteria 3281
168 Ga0395905_0084238 3300037471 Bacteria 2978
169 Ga0395905_0135864 3300037471 Bacteria 2313
170 Ga0395905_0158817 3300037471 Bacteria 2125
171 Ga0395901_0000369 3300038443 Bacteria 54034
172 Ga0395901_0006031 3300038443 Bacteria 12280
173 Ga0395901_0050004 3300038443 Bacteria 4344
174 Ga0395901_0082714 3300038443 Bacteria 3354
175 Ga0395901_0125924 3300038443 Bacteria 2692
176 Ga0395901_0148241 3300038443 Bacteria 2465
177 Ga0439455_0007586 3300042012 Bacteria 2299
178 Ga0439458_0000480 3300042157 Bacteria 10247
179 Ga0439464_0000488 3300042439 Bacteria 8022
180 Ga0466972_0046921 3300044658 Bacteria 2090
181 Ga0466966_0007749 3300044684 Bacteria 7113
182 Ga0466966_0012955 3300044684 Bacteria 5521
183 Ga0466961_0017856 3300044693 Bacteria 4561
184 Ga0466963_0006272 3300044694 Bacteria 7029
185 Ga0466963_0016817 3300044694 Bacteria 4553
186 Ga0466963_0073755 3300044694 Bacteria 2301
187 Ga0466964_0002098 3300044706 Bacteria 7020
188 Ga0466964_0012975 3300044706 Bacteria 3156
189 Ga0466970_0005330 3300044765 Bacteria 6377
190 Ga0466970_0038172 3300044765 Bacteria 2547
191 Ga0466957_0042502 3300044842 Bacteria 2750
192 Ga0466959_0046486 3300045049 Bacteria 3193
193 Ga0466958_0023293 3300045836 Bacteria 3632
194 Ga0466958_0024529 3300045836 Bacteria 3549
195 Ga0466967_0086942 3300045976 Bacteria 2833
196 Ga0466967_0153927 3300045976 Bacteria 2152
197 Ga0495663_0000495 3300046525 Bacteria 14217
198 Ga0495642_0021249 3300046528 Bacteria 2552
199 Ga0495621_0003388 3300046539 Bacteria 4399
200 Ga0495668_0056914 3300046616 Bacteria 2157
201 Ga0495670_0010033 3300046691 Bacteria 4658
202 Ga0496107_0003295 3300048910 Bacteria 10778
203 Ga0496107_0011494 3300048910 Bacteria 6167
204 Ga0496112_0000275 3300048915 Bacteria 33348
205 Ga0496112_0046681 3300048915 Bacteria 4249
206 Ga0501202_005086 3300049652 Bacteria 2322
207 Ga0501268_000462 3300049765 Bacteria 4416
208 Ga0500658_0000036 3300053134 Bacteria 85304
209 Ga0466962_0061891 3300061719 Bacteria 1786
210 2885429483 2885427238 Bacteria 2291351
211 Ga0466968_0007712
212 JGI24740J21852_10001126
213 JGI24739J22299_10003769
214 JGI24738J21930_10008755
215 Ga0070658_10016931
216 Ga0070658_10018898
217 Ga0070658_10055284
218 Ga0070683_100024323
219 Ga0070670_100003949
220 Ga0070677_10036844
221 Ga0070666_10010746
222 Ga0070680_100005433
223 Ga0070680_100013778
224 Ga0070680_100046204
225 Ga0070682_100013855
226 Ga0070682_100044119
227 Ga0070660_100008261
228 Ga0070660_100032328
229 Ga0070660_100049434
230 Ga0070691_10003582
231 Ga0070661_100002313
232 Ga0070661_100056051
233 Ga0070675_100087324
234 Ga0070671_100002414
235 Ga0070671_100010165
236 Ga0070671_100034633
237 Ga0070673_100108190
238 Ga0070659_100005147
239 Ga0070659_100022023
240 Ga0070667_100004723
241 Ga0070667_100025529
242 Ga0070667_100030943
243 Ga0070714_100094827
244 Ga0070694_100083083
245 Ga0070663_100020150
246 Ga0070662_100048706
247 Ga0070662_100082664
248 Ga0070681_10010226
249 Ga0070679_100020612
250 Ga0070679_100044440
251 Ga0070679_100059591
252 Ga0070684_100002671
253 Ga0068853_100025015
254 Ga0068853_100057716
255 Ga0070672_100032433
256 Ga0070695_100045323
257 Ga0070665_100008330
258 Ga0070665_100012613
259 Ga0068855_100107983
260 Ga0068855_100124450
261 Ga0070664_100028797
262 Ga0070664_100040831
263 Ga0068857_100006614
264 Ga0068857_100011147
265 Ga0068854_100002116
266 Ga0068854_100030482
267 Ga0068856_100013400
268 Ga0068852_100005093
269 Ga0068852_100024286
270 Ga0068852_100183072
271 Ga0068864_100005056
272 Ga0068863_100001894
273 Ga0068860_100019963
274 Ga0068860_100033206
275 Ga0097621_100017473
276 Ga0075428_100083606
277 Ga0105240_10087322
278 Ga0114129_10199201
279 Ga0105241_10025711
280 Ga0105237_10021095
281 Ga0105238_10017635
282 Ga0157371_10044524
283 Ga0157370_10102132
284 Ga0157370_10105326
285 Ga0157369_10004619
286 Ga0157372_10121713
287 Ga0157372_10204882
288 Ga0207647_10007000
289 Ga0207647_10013062
290 Ga0207695_10008855
291 Ga0207695_10242624
292 Ga0207671_10044290
293 Ga0207660_10000484
294 Ga0207660_10003208
295 Ga0207657_10001678
296 Ga0207657_10006107
297 Ga0207657_10026360
298 Ga0207649_10006255
299 Ga0207694_10025296
300 Ga0207650_10032241
301 Ga0207700_10037272
302 Ga0207664_10036282
303 Ga0207644_10008225
304 Ga0207644_10021936
305 Ga0207690_10019381
306 Ga0207690_10046055
307 Ga0207690_10049577
308 Ga0207706_10016257
309 Ga0207706_10037830
310 Ga0207711_10146041
311 Ga0207661_10012640
312 Ga0207679_10002993
313 Ga0207679_10010992
314 Ga0207667_10004710
315 Ga0207667_10011328
316 Ga0207667_10026137
317 Ga0207667_10098704
318 Ga0207651_10012099
319 Ga0207651_10162924
320 Ga0207639_10001159
321 Ga0207678_10041698
322 Ga0207678_10044966
323 Ga0207702_10002063
324 Ga0207702_10020838
325 Ga0207702_10025794
326 Ga0207641_10005258
327 Ga0207676_10008296
328 Ga0207676_10093212
329 Ga0207674_10003678
330 Ga0207674_10005996
331 Ga0207674_10012374
332 Ga0207698_10000896
333 Ga0207698_10043850
334 Ga0207698_10070377
335 Ga0268266_10000767
336 Ga0268266_10163940
337 Ga0268265_10033852
338 Ga0268264_10001993
339 Ga0268264_10070292
340 Ga0307405_10001450
341 Ga0307405_10137028
342 Ga0307413_10000878
343 Ga0307410_10059083
344 Ga0307407_10012359
345 Ga0307407_10157274
346 Ga0307412_10014242
347 Ga0307412_10046929
348 Ga0307412_10054484
349 Ga0307412_10081414
350 Ga0307409_100023744
351 Ga0307409_100057780
352 Ga0307416_100024485
353 Ga0307416_100257554
354 Ga0307414_10067561
355 Ga0307411_10014210
356 Ga0307411_10015709
357 Ga0373943_0017839
358 Ga0373935_0029055
359 Ga0373933_0051686
360 Ga0373937_0010753
361 Ga0395899_0021048
362 Ga0395899_0189728
363 Ga0395900_0001132
364 Ga0395900_0030498
365 Ga0395900_0041278
366 Ga0395900_0073419
367 Ga0395900_0088171
368 Ga0395900_0218026
369 Ga0395898_0011721
370 Ga0395898_0087550
371 Ga0395905_0000083
372 Ga0395905_0000558
373 Ga0395905_0006135
374 Ga0395905_0008256
375 Ga0395905_0019523
376 Ga0395905_0062402
377 Ga0395905_0070249
378 Ga0395905_0084238
379 Ga0395905_0135864
380 Ga0395905_0158817
381 Ga0395901_0000369
382 Ga0395901_0006031
383 Ga0395901_0050004
384 Ga0395901_0082714
385 Ga0395901_0125924
386 Ga0395901_0148241
387 Ga0439455_0007586
388 Ga0439458_0000480
389 Ga0439464_0000488
390 Ga0466972_0046921
391 Ga0466966_0007749
392 Ga0466966_0012955
393 Ga0466961_0017856
394 Ga0466963_0006272
395 Ga0466963_0016817
396 Ga0466963_0073755
397 Ga0466964_0002098
398 Ga0466964_0012975
399 Ga0466970_0005330
400 Ga0466970_0038172
401 Ga0466957_0042502
402 Ga0466959_0046486
403 Ga0466958_0023293
404 Ga0466958_0024529
405 Ga0466967_0086942
406 Ga0466967_0153927
407 Ga0495663_0000495
408 Ga0495642_0021249
409 Ga0495621_0003388
410 Ga0495668_0056914
411 Ga0495670_0010033
412 Ga0496107_0003295
413 Ga0496107_0011494
414 Ga0496112_0000275
415 Ga0496112_0046681
416 Ga0501202_005086
417 Ga0501268_000462
418 Ga0500658_0000036
419 Ga0466962_0061891
420 2885429483

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20142

Scaffold

Scaffold domain

98

216

0.84

PF03734

YkuD

L,D-transpeptidase catalytic domain

246

408

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7kgm-assembly1.cif.gz_A c. rodentium ycbb - ertapenem complex 0.7399 64 418
6ntw-assembly1.cif.gz_A crystal structure of e. coli ycbb 0.7009 65 418
1e4f-assembly1.cif.gz_T ftsa (apo form) from thermotoga maritima 0.6938 207 233
7ajx-assembly1.cif.gz_A the x-ray structure of l,d-transpeptidase ldta from vibrio cholerae in complex with meropenem 0.6879 65 410
7kgn-assembly1.cif.gz_A s. typhi ycbb - ertapenem complex 0.6339 62 417
ID Description Score Start End Superfamily
af_Q7K012_164_386_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.7207 209 236 3.30.420.40
af_P31459_1_76_3.30.420.300 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;2-keto-3-deoxy-galactonokinase, substrate binding domain 0.7178 207 235 3.30.420.300
af_A0A7I2V3D3_123_324_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.6743 209 235 3.30.420.40
af_Q9N4N4_168_398_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.656 207 235 3.30.420.40
af_P75954_98_241_2.40.440.10 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.6534 207 384 2.40.440.10
ID Description Score Start End GO Terms
AF-A0A7Y9VR54-F1-model_v4 deleted 0.9008 106 415
AF-A0A1F5B1I2-F1-model_v4 L,D-TPase catalytic domain-containing protein 0.8951 68 417 GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A7W9R5I8-F1-model_v4 deleted 0.8949 52 424
AF-A0A2W6VSP2-F1-model_v4 L,D-transpeptidase 0.8878 53 415 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A7Y5DLX7-F1-model_v4 L,D-transpeptidase family protein 0.8852 62 430 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555

Map