F320798

General Info

Members Datasets Scaffolds Average Seq Length
210 171 420 243

Family's Representative Sequence

Representative Sequence 3300046810|Ga0495660_0053926|Ga0495660_0053926_817_1632
Length 271
Sequence VICQNDYISGNFGYNKRYAFPELCFMKNGIENKVIAITGASSGIGKATAELLAAQGAKVVLGARRADRLKTIVQTIEQNGGEAAFLEIDVTRREDLAKLTALAVERFSKLDVLINNAGISQLYKMEDLDVDGWEQMIDVNLKGTLYGIAAALPVFKGQGSGHIINVISTAGISIVPTMGVYAGTKNAVRAISEALRQESQGRWRVTGISPGYVATEFASNIKNEEVRNTIQLNADKMAIPAEAVARAIAYAIEQPDNVDVGDIVIRPSVQG

Samples

Sample ID Description Type Environment
1 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
12 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
13 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
14 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
25 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
26 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
27 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
28 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
29 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
30 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
31 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
32 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
33 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
34 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
35 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
38 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
39 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
51 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
52 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
53 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
54 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
55 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
56 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
57 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
58 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
61 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
63 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
64 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
65 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
66 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
67 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
68 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
69 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
70 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
71 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
72 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
73 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
74 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
75 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
76 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
77 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
78 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
79 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
80 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
81 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
82 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
83 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
84 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
85 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
86 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
87 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
88 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
89 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
90 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
91 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
92 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
93 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
94 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
95 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
96 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
97 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
98 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
99 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
100 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
101 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
104 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
108 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
112 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
113 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
114 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
115 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
116 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
117 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
118 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
119 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
120 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
121 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
122 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
123 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
124 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
125 3300053144 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 endosphere Metagenome Endosphere
126 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
127 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
128 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
129 2515075009 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
130 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
131 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
132 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
133 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
134 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
135 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
136 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
137 2718218334 Luteibacter rhizovicinus LJ96 Isolate Rhizosphere
138 2734482264 Dyella sp. AD052 Isolate Unclassified
139 2738541278 Niastella sp. CF465 Isolate Unclassified
140 2808606384 Burkholderia sp. SJZ089 Isolate Rhizosphere
141 2808606390 Burkholderia sp. SJZ115 Isolate Rhizosphere
142 2808606391 Burkholderia sp. SJZ091 Isolate Rhizosphere
143 2821131069 Duganella sp. 1224 Isolate Unclassified
144 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
145 2856320880 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Isolate Nodule
146 2874139085 Mesorhizobium sp. M8A.F.Ca.ET.207.01.1.1 Isolate Nodule
147 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
148 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
149 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
150 2937877337 Mesorhizobium sp. M8A.F.Ca.ET.161.01.1.1 Isolate Nodule
151 2937972304 Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 Isolate Nodule
152 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
153 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
154 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
155 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
156 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
157 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
158 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
159 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
160 2958084443 Mesorhizobium sp. M8A.F.Ca.ET.142.01.1.1 Isolate Nodule
161 2958092219 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Isolate Nodule
162 2958144490 Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 Isolate Nodule
163 2968016561 Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 Isolate Nodule
164 2970469710 Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 Isolate Nodule
165 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
166 2996348954 Mesorhizobium sp. M8A.F.Ca.ET.167.01.1.1 Isolate Nodule
167 3004275668 Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 Isolate Nodule
168 3004289098 Mesorhizobium sp. M8A.F.Ca.ET.023.02.2.1 Isolate Nodule
169 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
170 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
171 8054727385 Micromonospora alfalfae MED01 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 78.57
Metatranscriptomes 0.48
Isolates 20.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.9
Nodule 8.57
Rhizoplane 3.81
Rhizosphere 54.76
Stem 0
Stem Tuber 0
Unclassified 2.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495660_0053926 3300046810 Bacteria 2180
2 JGI25162J39368_1005717 3300002737 Bacteria 2339
3 JGI25164J39214_1003131 3300002772 Bacteria 2198
4 JGI25150J39212_1000202 3300002774 Bacteria 32734
5 JGI25151J46595_10017368 3300003187 Bacteria 3122
6 JGI25151J46595_10071354 3300003187 Bacteria 1050
7 JGI25165J46597_1002246 3300003214 Bacteria 6712
8 JGI25153J46596_10000064 3300003215 Bacteria 125642
9 JGI25153J46596_10046248 3300003215 Bacteria 1291
10 rootH2_10216394 3300003320 Bacteria 1727
11 rootL2_10260767 3300003322 Bacteria 2173
12 rootH1_10003800 3300003323 Bacteria 30657
13 rootH1_10302111 3300003323 Unclassified 1064
14 Ga0055530_10005085 3300003791 Bacteria 6447
15 Ga0055531_10002094 3300003794 Bacteria 13698
16 Ga0055531_10002774 3300003794 Bacteria 11500
17 Ga0065714_10143954 3300005288 Bacteria 1151
18 Ga0068857_100602156 3300005577 Bacteria 1039
19 Ga0068856_100053823 3300005614 Bacteria 3969
20 Ga0068861_100697849 3300005719 Bacteria 943
21 Ga0081455_10035119 3300005937 Bacteria 4484
22 Ga0075370_10099711 3300006353 Bacteria 1680
23 Ga0075428_100018519 3300006844 Bacteria 7699
24 Ga0075429_100032960 3300006880 Bacteria 4502
25 Ga0105240_10431465 3300009093 Bacteria 1478
26 Ga0105241_10029349 3300009174 Bacteria 4104
27 Ga0105237_10000146 3300009545 Bacteria 99601
28 Ga0157373_10034005 3300013100 Bacteria 3663
29 Ga0157370_10156323 3300013104 Bacteria 2121
30 Ga0157370_10265377 3300013104 Bacteria 1586
31 Ga0182008_10003016 3300014497 Bacteria 10348
32 Ga0182008_10096281 3300014497 Bacteria 1461
33 Ga0182007_10001985 3300015262 Bacteria 10556
34 Ga0228711_1004434 3300022739 Bacteria 21595
35 Ga0228710_1004658 3300022740 Bacteria 21595
36 Ga0207427_100208 3300025231 Bacteria 53345
37 Ga0209437_100052 3300025233 Bacteria 380548
38 Ga0207425_1000095 3300025245 Bacteria 84955
39 Ga0209129_1001040 3300025258 Bacteria 16395
40 Ga0209233_1000067 3300025261 Bacteria 380554
41 Ga0209565_1006336 3300025263 Bacteria 3327
42 Ga0209676_1002875 3300025292 Bacteria 11338
43 Ga0209025_1000421 3300025294 Bacteria 84693
44 Ga0209025_1001648 3300025294 Bacteria 27540
45 Ga0209758_1000019 3300025297 Bacteria 743682
46 Ga0209758_1000168 3300025297 Bacteria 150965
47 Ga0209050_1004631 3300025298 Bacteria 9176
48 Ga0209051_1013607 3300025303 Bacteria 3858
49 Ga0209257_1000319 3300025304 Bacteria 100552
50 Ga0209257_1001533 3300025304 Bacteria 26941
51 Ga0207654_10311610 3300025911 Bacteria 1073
52 Ga0207671_10001255 3300025914 Bacteria 29914
53 Ga0207681_10164534 3300025923 Bacteria 1676
54 Ga0207667_10017702 3300025949 Bacteria 8016
55 Ga0207640_10279835 3300025981 Bacteria 1310
56 Ga0207702_10173723 3300026078 Bacteria 1978
57 Ga0207674_10103187 3300026116 Bacteria 2831
58 Ga0207428_10139343 3300027907 Bacteria 1853
59 Ga0307512_10017799 3300030522 Bacteria 6506
60 Ga0307513_10052081 3300031456 Bacteria 4410
61 Ga0307509_10181996 3300031507 Bacteria 1965
62 Ga0316575_10007373 3300031665 Bacteria 3981
63 Ga0316576_10005343 3300031727 Bacteria 7830
64 Ga0316576_10032998 3300031727 Bacteria 3682
65 Ga0316578_10009194 3300031728 Bacteria 5072
66 Ga0316578_10023979 3300031728 Bacteria 3419
67 Ga0316577_10021546 3300031733 Bacteria 3575
68 Ga0307406_10013586 3300031901 Bacteria 4667
69 Ga0307412_10166841 3300031911 Bacteria 1642
70 Ga0307409_100359558 3300031995 Bacteria 1377
71 Ga0316585_10013909 3300032137 Bacteria 2399
72 Ga0316585_10058462 3300032137 Bacteria 1243
73 Ga0316596_1075002 3300033541 Bacteria 907
74 Ga0316584_0016153 3300036712 Bacteria 5348
75 Ga0316584_0123104 3300036712 Bacteria 1937
76 Ga0436363_1022719 3300039450 Bacteria 2105
77 Ga0451802_1439292 3300041460 Bacteria 835
78 Ga0439431_0017263 3300041997 Bacteria 1695
79 Ga0495627_009815 3300046453 Bacteria 3507
80 Ga0495627_018851 3300046453 Bacteria 2320
81 Ga0495650_0000003 3300046471 Bacteria 900730
82 Ga0495650_0004946 3300046471 Bacteria 8891
83 Ga0495605_0002485 3300046474 Bacteria 11401
84 Ga0495605_0025838 3300046474 Bacteria 3057
85 Ga0495585_0008760 3300046492 Bacteria 6116
86 Ga0495607_0000003 3300046501 Bacteria 366900
87 Ga0495607_0020317 3300046501 Bacteria 4202
88 Ga0495607_0029652 3300046501 Bacteria 3366
89 Ga0495583_0016562 3300046506 Bacteria 3956
90 Ga0495606_0000426 3300046507 Bacteria 70066
91 Ga0495610_0059540 3300046512 Unclassified 1822
92 Ga0495616_0016058 3300046513 Bacteria 4150
93 Ga0495616_0019582 3300046513 Bacteria 3691
94 Ga0495620_0000373 3300046515 Bacteria 30762
95 Ga0495620_0043275 3300046515 Bacteria 1963
96 Ga0495631_0000034 3300046518 Bacteria 84600
97 Ga0495631_0008542 3300046518 Bacteria 5155
98 Ga0495632_0010212 3300046519 Bacteria 5579
99 Ga0495632_0047445 3300046519 Bacteria 2130
100 Ga0495637_0004743 3300046520 Bacteria 7015
101 Ga0495643_0187831 3300046522 Bacteria 999
102 Ga0495648_0009442 3300046524 Bacteria 7560
103 Ga0495648_0142607 3300046524 Bacteria 1259
104 Ga0495663_0007525 3300046525 Bacteria 3012
105 Ga0495652_0086430 3300046529 Bacteria 2575
106 Ga0495654_0044026 3300046530 Bacteria 2210
107 Ga0495654_0063624 3300046530 Bacteria 1766
108 Ga0495609_0001721 3300046538 Bacteria 14169
109 Ga0495633_0018022 3300046558 Bacteria 3592
110 Ga0495668_0005330 3300046616 Bacteria 8778
111 Ga0495611_0000017 3300046648 Bacteria 128087
112 Ga0495611_0003805 3300046648 Bacteria 6584
113 Ga0495625_0000005 3300046660 Bacteria 596135
114 Ga0495625_0002436 3300046660 Bacteria 20122
115 Ga0495625_0004595 3300046660 Bacteria 12979
116 Ga0495625_0022279 3300046660 Bacteria 4861
117 Ga0495661_0072713 3300046665 Unclassified 2005
118 Ga0495588_0000533 3300046674 Bacteria 18365
119 Ga0495649_0000003 3300046694 Bacteria 880817
120 Ga0495600_0049968 3300046809 Bacteria 2728
121 Ga0495660_0002779 3300046810 Bacteria 11041
122 Ga0495660_0018495 3300046810 Bacteria 4007
123 Ga0495660_0062449 3300046810 Bacteria 1997
124 Ga0495683_0078818 3300047323 Bacteria 1609
125 Ga0495687_029521 3300047443 Bacteria 2536
126 Ga0495687_041485 3300047443 Bacteria 2018
127 Ga0495673_0000030 3300047469 Bacteria 468915
128 Ga0495673_0020737 3300047469 Unclassified 3265
129 Ga0495681_0057736 3300047470 Bacteria 1801
130 Ga0495686_0169286 3300047472 Unclassified 1271
131 Ga0495626_0022861 3300048091 Bacteria 3085
132 Ga0496101_0071120 3300048904 Bacteria 2550
133 Ga0496106_0000073 3300048909 Bacteria 80498
134 Ga0496106_0003819 3300048909 Bacteria 11230
135 Ga0496107_0000114 3300048910 Bacteria 39294
136 Ga0496107_0638746 3300048910 Bacteria 785
137 Ga0496121_0002773 3300048924 Bacteria 25999
138 Ga0496122_0005155 3300048925 Bacteria 15748
139 Ga0496122_0027366 3300048925 Bacteria 4877
140 Ga0496123_0001564 3300048926 Bacteria 31306
141 Ga0496123_0149108 3300048926 Bacteria 1265
142 Ga0496124_0000227 3300048927 Bacteria 110314
143 Ga0496126_0098697 3300048929 Bacteria 2559
144 Ga0495682_0024408 3300049460 Bacteria 2254
145 Ga0501225_0046760 3300049705 Bacteria 1200
146 nmdc:mga09592_234522_c1 3300050508 Bacteria 1590
147 nmdc:mga08y16_23701_c1 3300050511 Bacteria 6481
148 Ga0500610_0011637 3300053079 Bacteria 4015
149 Ga0500635_0010881 3300053080 Bacteria 2570
150 Ga0500578_0024483 3300053086 Bacteria 3876
151 Ga0500566_0002840 3300053094 Bacteria 10313
152 Ga0500641_0052468 3300053096 Bacteria 1681
153 Ga0500556_0049759 3300053104 Bacteria 1512
154 Ga0500557_000252 3300053105 Bacteria 7759
155 Ga0500569_008974 3300053109 Bacteria 2307
156 Ga0500594_0002493 3300053118 Bacteria 4003
157 Ga0500608_109836 3300053122 Bacteria 1266
158 Ga0500618_001615 3300053125 Bacteria 9761
159 Ga0500642_0017719 3300053130 Bacteria 2737
160 Ga0500642_0104660 3300053130 Bacteria 1319
161 Ga0500559_0027426 3300053136 Bacteria 2431
162 Ga0500559_0222637 3300053136 Bacteria 889
163 Ga0500561_0014169 3300053137 Bacteria 1744
164 Ga0500585_066581 3300053144 Bacteria 1299
165 Ga0500590_000055 3300053148 Bacteria 27376
166 Ga0500622_0008877 3300053156 Bacteria 5596
167 2511130064 2510917021 Bacteria 5705459
168 2515108487 2515075009 Bacteria 7288508
169 2522551307 2522125168 Bacteria 7376607
170 2585902586 2585427608 Bacteria 6544331
171 2585993526 2585427633 Bacteria 6413184
172 2599335683 2599185156 Bacteria 5403036
173 2599724071 2599185236 Bacteria 6875203
174 2616552348 2615840698 Bacteria 7319877
175 2644500947 2643221689 Bacteria 6042950
176 2721027478 2718218334 Bacteria 4765486
177 2735837003 2734482264 Unclassified 5014763
178 2738731279 2738541278 Bacteria 9755573
179 2808972775 2808606384 Bacteria 8474373
180 2809007757 2808606390 Bacteria 8476311
181 2809014703 2808606391 Bacteria 8308166
182 2821132170 2821131069 Bacteria 6108407
183 2837679663 2837678835 Bacteria 5252418
184 2856322730 2856320880 Bacteria 7263508
185 2874141934 2874139085 Bacteria 7021506
186 2891050253 2891048133 Bacteria 4447501
187 2929179555 2929177148 Bacteria 7883697
188 2929239515 2929239360 Bacteria 7745570
189 2937883551 2937877337 Bacteria 7246526
190 2937973470 2937972304 Bacteria 7532020
191 2945981969 2945977869 Bacteria 7777518
192 2946018634 2946013367 Bacteria 7766675
193 2954711839 2954711539 Bacteria 10867210
194 2954721757 2954721474 Bacteria 10456478
195 2954740070 2954731030 Bacteria 10243860
196 2954740669 2954740390 Bacteria 10229294
197 2954758893 2954749733 Bacteria 10366972
198 2954759677 2954759201 Bacteria 9358192
199 2958090719 2958084443 Bacteria 7312792
200 2958098635 2958092219 Bacteria 6861151
201 2958144989 2958144490 Bacteria 6677056
202 2968016735 2968016561 Bacteria 7022047
203 2970470077 2970469710 Bacteria 6969209
204 2996312581 2996310559 Bacteria 6357320
205 2996352994 2996348954 Bacteria 7239054
206 3004279676 3004275668 Bacteria 7114440
207 3004293685 3004289098 Bacteria 6135450
208 3005420629 3005416602 Bacteria 7064308
209 8005318010 8005314921 Bacteria 7072929
210 8054733543 8054727385 Bacteria 7558670
211 Ga0495660_0053926
212 JGI25162J39368_1005717
213 JGI25164J39214_1003131
214 JGI25150J39212_1000202
215 JGI25151J46595_10017368
216 JGI25151J46595_10071354
217 JGI25165J46597_1002246
218 JGI25153J46596_10000064
219 JGI25153J46596_10046248
220 rootH2_10216394
221 rootL2_10260767
222 rootH1_10003800
223 rootH1_10302111
224 Ga0055530_10005085
225 Ga0055531_10002094
226 Ga0055531_10002774
227 Ga0065714_10143954
228 Ga0068857_100602156
229 Ga0068856_100053823
230 Ga0068861_100697849
231 Ga0081455_10035119
232 Ga0075370_10099711
233 Ga0075428_100018519
234 Ga0075429_100032960
235 Ga0105240_10431465
236 Ga0105241_10029349
237 Ga0105237_10000146
238 Ga0157373_10034005
239 Ga0157370_10156323
240 Ga0157370_10265377
241 Ga0182008_10003016
242 Ga0182008_10096281
243 Ga0182007_10001985
244 Ga0228711_1004434
245 Ga0228710_1004658
246 Ga0207427_100208
247 Ga0209437_100052
248 Ga0207425_1000095
249 Ga0209129_1001040
250 Ga0209233_1000067
251 Ga0209565_1006336
252 Ga0209676_1002875
253 Ga0209025_1000421
254 Ga0209025_1001648
255 Ga0209758_1000019
256 Ga0209758_1000168
257 Ga0209050_1004631
258 Ga0209051_1013607
259 Ga0209257_1000319
260 Ga0209257_1001533
261 Ga0207654_10311610
262 Ga0207671_10001255
263 Ga0207681_10164534
264 Ga0207667_10017702
265 Ga0207640_10279835
266 Ga0207702_10173723
267 Ga0207674_10103187
268 Ga0207428_10139343
269 Ga0307512_10017799
270 Ga0307513_10052081
271 Ga0307509_10181996
272 Ga0316575_10007373
273 Ga0316576_10005343
274 Ga0316576_10032998
275 Ga0316578_10009194
276 Ga0316578_10023979
277 Ga0316577_10021546
278 Ga0307406_10013586
279 Ga0307412_10166841
280 Ga0307409_100359558
281 Ga0316585_10013909
282 Ga0316585_10058462
283 Ga0316596_1075002
284 Ga0316584_0016153
285 Ga0316584_0123104
286 Ga0436363_1022719
287 Ga0451802_1439292
288 Ga0439431_0017263
289 Ga0495627_009815
290 Ga0495627_018851
291 Ga0495650_0000003
292 Ga0495650_0004946
293 Ga0495605_0002485
294 Ga0495605_0025838
295 Ga0495585_0008760
296 Ga0495607_0000003
297 Ga0495607_0020317
298 Ga0495607_0029652
299 Ga0495583_0016562
300 Ga0495606_0000426
301 Ga0495610_0059540
302 Ga0495616_0016058
303 Ga0495616_0019582
304 Ga0495620_0000373
305 Ga0495620_0043275
306 Ga0495631_0000034
307 Ga0495631_0008542
308 Ga0495632_0010212
309 Ga0495632_0047445
310 Ga0495637_0004743
311 Ga0495643_0187831
312 Ga0495648_0009442
313 Ga0495648_0142607
314 Ga0495663_0007525
315 Ga0495652_0086430
316 Ga0495654_0044026
317 Ga0495654_0063624
318 Ga0495609_0001721
319 Ga0495633_0018022
320 Ga0495668_0005330
321 Ga0495611_0000017
322 Ga0495611_0003805
323 Ga0495625_0000005
324 Ga0495625_0002436
325 Ga0495625_0004595
326 Ga0495625_0022279
327 Ga0495661_0072713
328 Ga0495588_0000533
329 Ga0495649_0000003
330 Ga0495600_0049968
331 Ga0495660_0002779
332 Ga0495660_0018495
333 Ga0495660_0062449
334 Ga0495683_0078818
335 Ga0495687_029521
336 Ga0495687_041485
337 Ga0495673_0000030
338 Ga0495673_0020737
339 Ga0495681_0057736
340 Ga0495686_0169286
341 Ga0495626_0022861
342 Ga0496101_0071120
343 Ga0496106_0000073
344 Ga0496106_0003819
345 Ga0496107_0000114
346 Ga0496107_0638746
347 Ga0496121_0002773
348 Ga0496122_0005155
349 Ga0496122_0027366
350 Ga0496123_0001564
351 Ga0496123_0149108
352 Ga0496124_0000227
353 Ga0496126_0098697
354 Ga0495682_0024408
355 Ga0501225_0046760
356 nmdc:mga09592_234522_c1
357 nmdc:mga08y16_23701_c1
358 Ga0500610_0011637
359 Ga0500635_0010881
360 Ga0500578_0024483
361 Ga0500566_0002840
362 Ga0500641_0052468
363 Ga0500556_0049759
364 Ga0500557_000252
365 Ga0500569_008974
366 Ga0500594_0002493
367 Ga0500608_109836
368 Ga0500618_001615
369 Ga0500642_0017719
370 Ga0500642_0104660
371 Ga0500559_0027426
372 Ga0500559_0222637
373 Ga0500561_0014169
374 Ga0500585_066581
375 Ga0500590_000055
376 Ga0500622_0008877
377 2511130064
378 2515108487
379 2522551307
380 2585902586
381 2585993526
382 2599335683
383 2599724071
384 2616552348
385 2644500947
386 2721027478
387 2735837003
388 2738731279
389 2808972775
390 2809007757
391 2809014703
392 2821132170
393 2837679663
394 2856322730
395 2874141934
396 2891050253
397 2929179555
398 2929239515
399 2937883551
400 2937973470
401 2945981969
402 2946018634
403 2954711839
404 2954721757
405 2954740070
406 2954740669
407 2954758893
408 2954759677
409 2958090719
410 2958098635
411 2958144989
412 2968016735
413 2970470077
414 2996312581
415 2996352994
416 3004279676
417 3004293685
418 3005420629
419 8005318010
420 8054733543

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

33

227

0.98

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

39

263

0.92

PF08659

KR

KR domain

34

214

0.88

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

35

265

0.63

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9866 7 244
3tfo-assembly1.cif.gz_B crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9775 7 244
3tfo-assembly1.cif.gz_D crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9695 8 245
3tfo-assembly1.cif.gz_C crystal structure of a putative 3-oxoacyl-(acyl-carrier-protein) reductase from sinorhizobium meliloti 0.9674 8 246
2jap-assembly1.cif.gz_C clavulanic acid dehydrogenase: structural and biochemical analysis of the final step in the biosynthesis of the beta-lactamase inhibitor clavulanic acid 0.9659 3 246
ID Description Score Start End Superfamily
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9866 7 244 3.40.50.720
3tfoB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9775 7 244 3.40.50.720
af_A0A0P0X9U1_21_128_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9626 3 95 3.40.50.720
2jahD00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.956 3 246 3.40.50.720
af_A0A1D6ED38_49_231_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9558 6 182 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A853HDA3-F1-model_v4 deleted 0.9976 5 246
AF-A0A2V8JZC1-F1-model_v4 Oxidoreductase 0.9972 5 187 GO:0016491
AF-A0A5A8AKA6-F1-model_v4 SDR family oxidoreductase 0.9967 3 246 GO:0016491
AF-A0A1G9IQG9-F1-model_v4 NADP-dependent 3-hydroxy acid dehydrogenase YdfG 0.9965 3 246 GO:0016491
AF-A0A520A9Z9-F1-model_v4 SDR family oxidoreductase 0.9959 71 246 GO:0016491

Map