F320949

General Info

Members Datasets Scaffolds Average Seq Length
210 138 420 384

Family's Representative Sequence

Representative Sequence 3300053125|Ga0500618_003181|Ga0500618_003181_1556_2860
Length 434
Sequence VNSAAGSDLQRAEYDLNVLAPNGLRRGRSTGSCATAAVRAALYLLLGGMRVEQTEVSLPDGLHFLLVPIQGVEAVGDGTVRAEVLKDGGDDPDNTHGATIFVELRPNEIGQLRFFAAQGVGIATLPGLRVAVGEPAINPVPRKMMRQAVSEVLLELLPLQKDADGAAQMAWLEQGFDIAVGCRDGEIIAKKTFNPRLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALADCREAQEGVAYLPGKIGRTFVSSVLGLPDKRSVQIANFLGDALDFTQQALQEQARRLPVLWLAGHPGKLAKVLDGSWDTHSGKSNMAMGGVAEVAAALRDAAGQALFDAATLDAMRAANTVEAIIDQVRAESAERSRALWLEIEQRIAALAQQRLPNVDRVEVRLFDLDGALLGAGSAAAMKLNAXXXXEDAAGTNEEDVE

Samples

Sample ID Description Type Environment
1 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
4 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
5 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
6 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003575 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
9 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
10 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
11 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
12 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
13 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
14 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
15 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
29 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
30 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
31 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
40 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
41 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
42 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
43 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
44 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
45 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
46 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
52 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
54 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
55 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
73 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
74 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
75 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
76 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
81 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
82 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
83 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
86 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
87 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
88 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
89 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
90 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
91 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
98 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
99 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
100 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
101 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
104 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
108 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
109 2511231003 Herbaspirillum sp. CF444 Isolate Rhizosphere
110 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
111 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
112 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
113 2548876994 Herbaspirillum lusitanum P6-12 Isolate Nodule
114 2551306416 Herbaspirillum seropedicae Os34 Isolate Unclassified
115 2765235838 Herbaspirillum robiniae AA6 Isolate Unclassified
116 2818991445 Herbaspirillum hiltneri 3195 Isolate Unclassified
117 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
118 2839094727 Herbaspirillum robiniae HZ10 Isolate Nodule
119 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
120 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
121 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
122 2857553236 Duganella sp. R-74557 Isolate Unclassified
123 2884811622 Herbaspirillum sp. 3C11 Isolate Unclassified
124 2884836552 Herbaspirillum sp. 3R-11 Isolate Unclassified
125 2884852848 Herbaspirillum sp. 3R11 Isolate Unclassified
126 2885266251 Ralstonia sp. SET104 Isolate Nodule
127 2896154374 Herbaspirillum sp. 3R-3a1 Isolate Nodule
128 2904424332 Duganella sp. 1411 Isolate Rhizosphere
129 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
130 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
131 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
132 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
133 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
134 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
135 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
136 2919476304 Duganella sp. 3397 Isolate Unclassified
137 2923510766 Herbaspirillum rubrisubalbicans SLBN-127 Isolate Rhizosphere
138 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 84.76
Metatranscriptomes 0.48
Isolates 14.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.95
Nodule 3.81
Rhizoplane 0.48
Rhizosphere 59.52
Stem 0
Stem Tuber 0
Unclassified 4.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500618_003181 3300053125 Bacteria 5761
2 JGI24740J21852_10000221 3300001979 Bacteria 24094
3 JGI25155J39150_1000116 3300002704 Bacteria 39494
4 JGI25155J39150_1000296 3300002704 Bacteria 17018
5 JGI25156J39149_1000032 3300002705 Bacteria 118609
6 JGI25156J39149_1009288 3300002705 Bacteria 2402
7 JGI25154J39366_1000218 3300002738 Bacteria 39523
8 JGI25154J39366_1000506 3300002738 Bacteria 19861
9 JGI25154J39366_1000517 3300002738 Bacteria 19527
10 JGI25157J39369_1000212 3300002741 Bacteria 48259
11 rootH1_10160939 3300003323 Bacteria 2675
12 Ga0007409J51694_1100021 3300003575 Bacteria 2309
13 Ga0055538_1000020 3300003751 Bacteria 264193
14 Ga0055539_1000025 3300003752 Bacteria 264193
15 Ga0055533_1000034 3300003756 Bacteria 264193
16 Ga0055533_1000442 3300003756 Bacteria 15755
17 Ga0055532_1000083 3300003758 Bacteria 118609
18 Ga0055525_1000044 3300003759 Bacteria 264193
19 Ga0055542_1000983 3300003762 Bacteria 18498
20 Ga0055541_1000019 3300003841 Bacteria 264193
21 Ga0055541_1000782 3300003841 Bacteria 7965
22 Ga0070659_100002067 3300005366 Bacteria 14323
23 Ga0070714_100036425 3300005435 Unclassified 4127
24 Ga0070713_100011225 3300005436 Bacteria 6514
25 Ga0070713_100049066 3300005436 Bacteria 3481
26 Ga0070708_100071950 3300005445 Bacteria 3114
27 Ga0070681_10039081 3300005458 Unclassified 4757
28 Ga0070706_100026566 3300005467 Bacteria 5326
29 Ga0070706_100078697 3300005467 Bacteria 3052
30 Ga0070699_100279048 3300005518 Unclassified 1496
31 Ga0070697_100038659 3300005536 Bacteria 3857
32 Ga0070665_100069174 3300005548 Bacteria 3538
33 Ga0068855_100000197 3300005563 Bacteria 78127
34 Ga0068855_100005371 3300005563 Bacteria 15630
35 Ga0068855_100008882 3300005563 Bacteria 12148
36 Ga0068855_100109787 3300005563 Bacteria 3167
37 Ga0068856_100104230 3300005614 Bacteria 2830
38 Ga0068852_100112655 3300005616 Bacteria 2476
39 Ga0070717_10051063 3300006028 Bacteria 3402
40 Ga0070712_100270352 3300006175 Bacteria 1365
41 Ga0079104_1005078 3300006946 Bacteria 5364
42 Ga0079104_1009679 3300006946 Bacteria 3246
43 Ga0105244_10030987 3300009036 Bacteria 2841
44 Ga0105240_10001798 3300009093 Bacteria 36105
45 Ga0105240_10022872 3300009093 Bacteria 8282
46 Ga0105240_10035343 3300009093 Bacteria 6441
47 Ga0105240_10067929 3300009093 Bacteria 4416
48 Ga0105240_10204574 3300009093 Unclassified 2312
49 Ga0105237_10017509 3300009545 Bacteria 7426
50 Ga0105237_10048982 3300009545 Unclassified 4248
51 Ga0105237_10080098 3300009545 Unclassified 3256
52 Ga0105237_10208584 3300009545 Bacteria 1954
53 Ga0105238_10000104 3300009551 Bacteria 94726
54 Ga0105238_10025966 3300009551 Bacteria 5971
55 Ga0105238_10214030 3300009551 Bacteria 1903
56 Ga0105239_10059943 3300010375 Bacteria 4176
57 Ga0105239_10506035 3300010375 Bacteria 1373
58 Ga0157369_10017114 3300013105 Bacteria 8146
59 Ga0163162_10182666 3300013306 Bacteria 2224
60 Ga0163163_10149116 3300014325 Unclassified 2383
61 Ga0182008_10008802 3300014497 Bacteria 5484
62 Ga0182008_10036503 3300014497 Bacteria 2459
63 Ga0182006_1000008 3300015261 Bacteria 449652
64 Ga0182006_1000800 3300015261 Bacteria 21152
65 Ga0182006_1015196 3300015261 Bacteria 3302
66 Ga0182007_10025337 3300015262 Bacteria 2067
67 Ga0182005_1000022 3300015265 Bacteria 266181
68 Ga0213872_10000615 3300021361 Bacteria 26974
69 Ga0213872_10001653 3300021361 Bacteria 14045
70 Ga0213872_10007826 3300021361 Bacteria 5221
71 Ga0213872_10062447 3300021361 Bacteria 1683
72 Ga0213876_10002710 3300021384 Bacteria 10318
73 Ga0213876_10027229 3300021384 Bacteria 3017
74 Ga0209435_100013 3300025206 Bacteria 366789
75 Ga0209435_100306 3300025206 Bacteria 11865
76 Ga0209784_100002 3300025224 Bacteria 1753105
77 Ga0209784_100160 3300025224 Bacteria 60798
78 Ga0209566_100003 3300025225 Bacteria 1753105
79 Ga0209566_101338 3300025225 Bacteria 7845
80 Ga0209674_100004 3300025226 Bacteria 1753105
81 Ga0209674_100118 3300025226 Bacteria 135635
82 Ga0209147_100030 3300025229 Bacteria 366789
83 Ga0209563_100006 3300025230 Bacteria 1753105
84 Ga0209437_100275 3300025233 Bacteria 76419
85 Ga0209258_100433 3300025242 Bacteria 48200
86 Ga0209646_1000034 3300025246 Bacteria 366789
87 Ga0209646_1000059 3300025246 Bacteria 256909
88 Ga0209646_1000378 3300025246 Bacteria 28778
89 Ga0209026_1000022 3300025250 Bacteria 366789
90 Ga0209026_1003280 3300025250 Bacteria 5414
91 Ga0209677_100003 3300025253 Bacteria 1753105
92 Ga0209677_104946 3300025253 Bacteria 3635
93 Ga0209148_1000021 3300025254 Bacteria 714645
94 Ga0209759_1000018 3300025256 Bacteria 366789
95 Ga0209759_1000553 3300025256 Bacteria 38286
96 Ga0209759_1008707 3300025256 Bacteria 3137
97 Ga0207684_10032688 3300025910 Bacteria 4424
98 Ga0207695_10001636 3300025913 Bacteria 36191
99 Ga0207695_10003700 3300025913 Bacteria 21312
100 Ga0207695_10022949 3300025913 Bacteria 7067
101 Ga0207695_10113171 3300025913 Bacteria 2690
102 Ga0207695_10136056 3300025913 Bacteria 2410
103 Ga0207671_10011556 3300025914 Bacteria 7171
104 Ga0207657_10099088 3300025919 Bacteria 2421
105 Ga0207694_10000188 3300025924 Bacteria 62768
106 Ga0207694_10226739 3300025924 Bacteria 1525
107 Ga0207700_10012802 3300025928 Bacteria 5425
108 Ga0207690_10006012 3300025932 Bacteria 7192
109 Ga0207665_10116077 3300025939 Unclassified 1886
110 Ga0207667_10000034 3300025949 Bacteria 304569
111 Ga0207667_10003806 3300025949 Bacteria 18566
112 Ga0207667_10006292 3300025949 Bacteria 14401
113 Ga0207667_10219261 3300025949 Bacteria 1949
114 Ga0207667_10251278 3300025949 Bacteria 1809
115 Ga0207640_10028818 3300025981 Bacteria 3400
116 Ga0207702_10076698 3300026078 Bacteria 2890
117 Ga0207698_10034457 3300026142 Bacteria 3691
118 Ga0209281_1008179 3300027111 Bacteria 2562
119 Ga0209281_1010651 3300027111 Bacteria 2094
120 Ga0268266_10012386 3300028379 Bacteria 7371
121 Ga0307511_10000115 3300030521 Bacteria 72695
122 Ga0316181_1134980 3300030744 Bacteria 3351
123 Ga0265331_10014297 3300031250 Bacteria 4233
124 Ga0307518_10068766 3300031838 Bacteria 2566
125 Ga0395901_0036198 3300038443 Bacteria 5100
126 Ga0436365_0703178 3300039437 Bacteria 17986
127 Ga0436365_1416355 3300039437 Bacteria 117881
128 Ga0436365_1557651 3300039437 Bacteria 2975
129 Ga0436365_1863158 3300039437 Bacteria 9897
130 Ga0436360_0425337 3300039438 Bacteria 1336
131 Ga0436360_0524464 3300039438 Bacteria 8427
132 Ga0436361_0085675 3300039447 Bacteria 2737
133 Ga0436361_0191418 3300039447 Unclassified 3490
134 Ga0436361_0527908 3300039447 Bacteria 2296
135 Ga0436361_0573668 3300039447 Bacteria 8753
136 Ga0436361_0872724 3300039447 Bacteria 57229
137 Ga0436361_0901587 3300039447 Bacteria 3457
138 Ga0466969_0011590 3300044656 Bacteria 4667
139 Ga0466969_0014672 3300044656 Bacteria 4119
140 Ga0466965_0034790 3300044683 Bacteria 2466
141 Ga0466961_0003618 3300044693 Bacteria 9631
142 Ga0466970_0068760 3300044765 Unclassified 1903
143 Ga0466959_0008010 3300045049 Bacteria 7444
144 Ga0466959_0015428 3300045049 Bacteria 5565
145 Ga0466959_0057347 3300045049 Bacteria 2839
146 Ga0466959_0062281 3300045049 Bacteria 2711
147 Ga0451576_0311442 3300045051 Bacteria 1647
148 Ga0495627_000001 3300046453 Bacteria 1104709
149 Ga0495650_0000082 3300046471 Bacteria 239477
150 Ga0495650_0002717 3300046471 Bacteria 13716
151 Ga0495606_0000089 3300046507 Bacteria 154743
152 Ga0495610_0003366 3300046512 Bacteria 12533
153 Ga0495610_0004792 3300046512 Bacteria 9869
154 Ga0495609_0000085 3300046538 Bacteria 112739
155 Ga0495633_0000047 3300046558 Bacteria 165890
156 Ga0495625_0000493 3300046660 Bacteria 59205
157 Ga0495625_0042396 3300046660 Bacteria 3307
158 Ga0495624_0111517 3300046690 Bacteria 1682
159 Ga0495600_0005886 3300046809 Bacteria 7418
160 Ga0495660_0000024 3300046810 Bacteria 268209
161 Ga0495660_0000970 3300046810 Bacteria 20959
162 Ga0495672_0000022 3300047320 Bacteria 420632
163 Ga0495681_0007450 3300047470 Bacteria 6992
164 Ga0495686_0000321 3300047472 Bacteria 79813
165 Ga0496103_0016139 3300048906 Bacteria 4457
166 Ga0496116_0007969 3300048919 Bacteria 9279
167 Ga0496116_0035181 3300048919 Bacteria 3521
168 Ga0496118_0107877 3300048921 Bacteria 1858
169 Ga0496121_0002913 3300048924 Bacteria 25104
170 Ga0496121_0052417 3300048924 Bacteria 3427
171 Ga0496121_0061403 3300048924 Bacteria 3084
172 Ga0496122_0000134 3300048925 Bacteria 171080
173 Ga0496123_0000307 3300048926 Bacteria 95174
174 Ga0496124_0012504 3300048927 Bacteria 8371
175 Ga0496125_0000433 3300048928 Bacteria 76686
176 Ga0495678_000002 3300049459 Bacteria 999613
177 Ga0495678_005232 3300049459 Bacteria 7234
178 Ga0495678_009025 3300049459 Bacteria 4978
179 Ga0501269_000100 3300049766 Bacteria 26901
180 2511250342 2511231003 Bacteria 5606035
181 2511385222 2511231026 Bacteria 5225445
182 2521558647 2521172590 Bacteria 5047645
183 2547373927 2547132103 Bacteria 5115736
184 2550695472 2548876994 Bacteria 4904866
185 2553004379 2551306416 Bacteria 6152985
186 2765569755 2765235838 Bacteria 5445269
187 2819591803 2818991445 Bacteria 4955017
188 2819614123 2818991449 Bacteria 5518009
189 2839097306 2839094727 Bacteria 5534556
190 2843693175 2843690924 Bacteria 5169057
191 2846036802 2846033681 Bacteria 4377894
192 2846041445 2846037992 Bacteria 4526407
193 2857555332 2857553236 Bacteria 6166726
194 2884815278 2884811622 Bacteria 5552861
195 2884815314 2884811622 Bacteria 5552861
196 2884837606 2884836552 Bacteria 5219991
197 2884853897 2884852848 Bacteria 5221161
198 2885268358 2885266251 Bacteria 4796748
199 2896154986 2896154374 Bacteria 5221518
200 2904425061 2904424332 Bacteria 7633521
201 2904444060 2904439833 Bacteria 5931679
202 2904534396 2904530477 Bacteria 5876334
203 2904584287 2904584206 Bacteria 6028872
204 2904590756 2904589729 Bacteria 6113573
205 2904603405 2904601388 Bacteria 5884906
206 2919047082 2919046199 Bacteria 5567169
207 2919080591 2919079590 Bacteria 5946433
208 2919477692 2919476304 Bacteria 5888696
209 2923512225 2923510766 Bacteria 5926163
210 2928131883 2928130867 Bacteria 5467269
211 Ga0500618_003181
212 JGI24740J21852_10000221
213 JGI25155J39150_1000116
214 JGI25155J39150_1000296
215 JGI25156J39149_1000032
216 JGI25156J39149_1009288
217 JGI25154J39366_1000218
218 JGI25154J39366_1000506
219 JGI25154J39366_1000517
220 JGI25157J39369_1000212
221 rootH1_10160939
222 Ga0007409J51694_1100021
223 Ga0055538_1000020
224 Ga0055539_1000025
225 Ga0055533_1000034
226 Ga0055533_1000442
227 Ga0055532_1000083
228 Ga0055525_1000044
229 Ga0055542_1000983
230 Ga0055541_1000019
231 Ga0055541_1000782
232 Ga0070659_100002067
233 Ga0070714_100036425
234 Ga0070713_100011225
235 Ga0070713_100049066
236 Ga0070708_100071950
237 Ga0070681_10039081
238 Ga0070706_100026566
239 Ga0070706_100078697
240 Ga0070699_100279048
241 Ga0070697_100038659
242 Ga0070665_100069174
243 Ga0068855_100000197
244 Ga0068855_100005371
245 Ga0068855_100008882
246 Ga0068855_100109787
247 Ga0068856_100104230
248 Ga0068852_100112655
249 Ga0070717_10051063
250 Ga0070712_100270352
251 Ga0079104_1005078
252 Ga0079104_1009679
253 Ga0105244_10030987
254 Ga0105240_10001798
255 Ga0105240_10022872
256 Ga0105240_10035343
257 Ga0105240_10067929
258 Ga0105240_10204574
259 Ga0105237_10017509
260 Ga0105237_10048982
261 Ga0105237_10080098
262 Ga0105237_10208584
263 Ga0105238_10000104
264 Ga0105238_10025966
265 Ga0105238_10214030
266 Ga0105239_10059943
267 Ga0105239_10506035
268 Ga0157369_10017114
269 Ga0163162_10182666
270 Ga0163163_10149116
271 Ga0182008_10008802
272 Ga0182008_10036503
273 Ga0182006_1000008
274 Ga0182006_1000800
275 Ga0182006_1015196
276 Ga0182007_10025337
277 Ga0182005_1000022
278 Ga0213872_10000615
279 Ga0213872_10001653
280 Ga0213872_10007826
281 Ga0213872_10062447
282 Ga0213876_10002710
283 Ga0213876_10027229
284 Ga0209435_100013
285 Ga0209435_100306
286 Ga0209784_100002
287 Ga0209784_100160
288 Ga0209566_100003
289 Ga0209566_101338
290 Ga0209674_100004
291 Ga0209674_100118
292 Ga0209147_100030
293 Ga0209563_100006
294 Ga0209437_100275
295 Ga0209258_100433
296 Ga0209646_1000034
297 Ga0209646_1000059
298 Ga0209646_1000378
299 Ga0209026_1000022
300 Ga0209026_1003280
301 Ga0209677_100003
302 Ga0209677_104946
303 Ga0209148_1000021
304 Ga0209759_1000018
305 Ga0209759_1000553
306 Ga0209759_1008707
307 Ga0207684_10032688
308 Ga0207695_10001636
309 Ga0207695_10003700
310 Ga0207695_10022949
311 Ga0207695_10113171
312 Ga0207695_10136056
313 Ga0207671_10011556
314 Ga0207657_10099088
315 Ga0207694_10000188
316 Ga0207694_10226739
317 Ga0207700_10012802
318 Ga0207690_10006012
319 Ga0207665_10116077
320 Ga0207667_10000034
321 Ga0207667_10003806
322 Ga0207667_10006292
323 Ga0207667_10219261
324 Ga0207667_10251278
325 Ga0207640_10028818
326 Ga0207702_10076698
327 Ga0207698_10034457
328 Ga0209281_1008179
329 Ga0209281_1010651
330 Ga0268266_10012386
331 Ga0307511_10000115
332 Ga0316181_1134980
333 Ga0265331_10014297
334 Ga0307518_10068766
335 Ga0395901_0036198
336 Ga0436365_0703178
337 Ga0436365_1416355
338 Ga0436365_1557651
339 Ga0436365_1863158
340 Ga0436360_0425337
341 Ga0436360_0524464
342 Ga0436361_0085675
343 Ga0436361_0191418
344 Ga0436361_0527908
345 Ga0436361_0573668
346 Ga0436361_0872724
347 Ga0436361_0901587
348 Ga0466969_0011590
349 Ga0466969_0014672
350 Ga0466965_0034790
351 Ga0466961_0003618
352 Ga0466970_0068760
353 Ga0466959_0008010
354 Ga0466959_0015428
355 Ga0466959_0057347
356 Ga0466959_0062281
357 Ga0451576_0311442
358 Ga0495627_000001
359 Ga0495650_0000082
360 Ga0495650_0002717
361 Ga0495606_0000089
362 Ga0495610_0003366
363 Ga0495610_0004792
364 Ga0495609_0000085
365 Ga0495633_0000047
366 Ga0495625_0000493
367 Ga0495625_0042396
368 Ga0495624_0111517
369 Ga0495600_0005886
370 Ga0495660_0000024
371 Ga0495660_0000970
372 Ga0495672_0000022
373 Ga0495681_0007450
374 Ga0495686_0000321
375 Ga0496103_0016139
376 Ga0496116_0007969
377 Ga0496116_0035181
378 Ga0496118_0107877
379 Ga0496121_0002913
380 Ga0496121_0052417
381 Ga0496121_0061403
382 Ga0496122_0000134
383 Ga0496123_0000307
384 Ga0496124_0012504
385 Ga0496125_0000433
386 Ga0495678_000002
387 Ga0495678_005232
388 Ga0495678_009025
389 Ga0501269_000100
390 2511250342
391 2511385222
392 2521558647
393 2547373927
394 2550695472
395 2553004379
396 2765569755
397 2819591803
398 2819614123
399 2839097306
400 2843693175
401 2846036802
402 2846041445
403 2857555332
404 2884815278
405 2884815314
406 2884837606
407 2884853897
408 2885268358
409 2896154986
410 2904425061
411 2904444060
412 2904534396
413 2904584287
414 2904590756
415 2904603405
416 2919047082
417 2919080591
418 2919477692
419 2923512225
420 2928131883

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01888

CbiD

CbiD

24

308

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1e0b-assembly1.cif.gz_B chromo shadow domain from fission yeast swi6 protein. 0.6959 65 82
3w63-assembly1.cif.gz_A-2 mamm-ctd 215-293 0.6496 336 369
6h8d-assembly1.cif.gz_A-2 mamm ctd d249n - nickel form 0.6491 336 369
4bts-assembly1.cif.gz_AW the crystal structure of the eukaryotic 40s ribosomal subunit in complex with eif1 and eif1a 0.6479 62 99
6ha2-assembly1.cif.gz_A-2 mamm ctd d249h-h285d 0.6365 336 369
ID Description Score Start End Superfamily
af_Q60342_11_181_3.30.2110.10 Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like 0.9247 23 195 3.30.2110.10
af_Q60342_11_181_3.30.2110.10 Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like 0.9143 23 195 3.30.2110.10
1sr8A02 Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like 0.8677 23 195 3.30.2110.10
1sr8A02 Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like 0.8571 23 195 3.30.2110.10
af_Q2FVD9_38_137_3.10.450.130 Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;folded 79 residue fragment of lin0334 like domains 0.7583 65 99 3.10.450.130
ID Description Score Start End GO Terms
AF-A0A7C2FMW0-F1-model_v4 Cobalt-precorrin-5B (C(1))-methyltransferase 0.9505 20 197 GO:0008168
GO:0009236
GO:0032259
AF-Q1J3Y4-F1-model_v4 Cobalt-precorrin-5B C(1)-methyltransferase (EC 2.1.1.195) (Cobalt-precorrin-6A synthase) 0.9456 8 376 GO:0019251
GO:0032259
GO:0043780
AF-H8GXZ9-F1-model_v4 Cobalt-precorrin-5B C(1)-methyltransferase (EC 2.1.1.195) (Cobalt-precorrin-6A synthase) 0.942 50 376 GO:0019251
GO:0032259
GO:0043780
AF-A0A5F0LT28-F1-model_v4 Cobalt-precorrin-6A synthase 0.9354 2 84 GO:0008168
GO:0009236
GO:0032259
AF-A0A7C5XDX0-F1-model_v4 Cobalt-precorrin-5B (C(1))-methyltransferase 0.9346 18 220 GO:0008168
GO:0009236
GO:0016020
GO:0032259

Map