F322116

General Info

Members Datasets Scaffolds Average Seq Length
211 152 195 169

Family's Representative Sequence

Representative Sequence 3300049665|Ga0501227_032305|Ga0501227_032305_532_1140
Length 190
Sequence MPAINSDAGSGGTNLCKESPDEHKACFEEWLHAHGAVLHHVANGFAAGADRDDLMQELLLAVWKATPAFREGAKPSTFIYRVAHNAALTWKRTQRNYRKRIEGFEASPLREQGTPSETSSSERETLELLYEAIRRLPPVDRSLILLHLDGVGYVEMAAIHGLSESNVGARLTRLKQKLSDAMRKVSDELR

Samples

Sample ID Description Type Environment
1 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
2 2582581280 Caulobacter henricii CF287 Isolate Rhizosphere
3 2582581293 Caulobacter henricii YR570 Isolate Rhizosphere
4 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
5 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
6 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
7 2643221584 Caulobacter sp. Root656 Isolate Unclassified
8 2643221640 Caulobacter sp. Root342 Isolate Unclassified
9 2643221642 Caulobacter sp. Root343 Isolate Unclassified
10 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
11 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
12 2818991435 Caulobacter henricii 536 Isolate Unclassified
13 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
14 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
15 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
16 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
17 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
20 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
21 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
22 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
23 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
24 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
25 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
26 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
27 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
28 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
29 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
32 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
33 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
34 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
35 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
36 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
37 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
40 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
41 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
42 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
43 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
44 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
48 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
57 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
62 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
64 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
77 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
78 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
79 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
80 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
81 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
82 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
83 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
84 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
85 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
86 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
87 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
88 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
89 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
90 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
91 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
92 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
93 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
94 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
95 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
96 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
97 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
98 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
99 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
100 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
101 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
102 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
103 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
104 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
105 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
106 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
107 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
108 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
109 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
110 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
111 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
112 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
113 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
114 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
123 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
124 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
125 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
126 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
127 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
131 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
132 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
133 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
134 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
135 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
136 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
137 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
138 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
139 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
140 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
141 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
142 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
143 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
144 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
145 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
146 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
147 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
148 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
149 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
150 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
151 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
152 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.42
Metatranscriptomes 0
Isolates 7.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 26.54
Nodule 0
Rhizoplane 2.37
Rhizosphere 60.19
Stem 0
Stem Tuber 0
Unclassified 10.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10032989 3300003215 Bacteria 1717
2 rootL2_10053109 3300003322 Bacteria 1295
3 Ga0055526_1023847 3300003771 Bacteria 2026
4 Ga0055537_1004011 3300003773 Bacteria 4336
5 Ga0055524_1010793 3300003775 Bacteria 3614
6 Ga0055536_1002445 3300003781 Bacteria 10430
7 Ga0055536_1003037 3300003781 Bacteria 9174
8 Ga0055528_1002211 3300003790 Bacteria 10631
9 Ga0055530_10007429 3300003791 Bacteria 4616
10 Ga0055530_10030331 3300003791 Bacteria 1433
11 Ga0055531_10003048 3300003794 Bacteria 10853
12 Ga0055531_10032278 3300003794 Bacteria 1714
13 Ga0065165_1001108 3300005262 Bacteria 31987
14 Ga0068869_100508404 3300005334 Bacteria 1007
15 Ga0070689_100078183 3300005340 Bacteria 2594
16 Ga0070669_100256802 3300005353 Unclassified 1393
17 Ga0070671_100011355 3300005355 Bacteria 7160
18 Ga0070673_100017243 3300005364 Bacteria 5129
19 Ga0070673_100795001 3300005364 Bacteria 873
20 Ga0070673_100907331 3300005364 Bacteria 817
21 Ga0070688_100582510 3300005365 Unclassified 854
22 Ga0070701_10119457 3300005438 Bacteria 1483
23 Ga0068867_100711207 3300005459 Bacteria 887
24 Ga0070685_11051030 3300005466 Bacteria 613
25 Ga0070707_100743428 3300005468 Bacteria 944
26 Ga0070672_100207755 3300005543 Bacteria 1639
27 Ga0070664_100090872 3300005564 Unclassified 2642
28 Ga0068859_100165101 3300005617 Bacteria 2294
29 Ga0068861_101600014 3300005719 Bacteria 642
30 Ga0068863_100272066 3300005841 Unclassified 1640
31 Ga0068863_100564739 3300005841 Bacteria 1124
32 Ga0068858_101047050 3300005842 Bacteria 800
33 Ga0070717_10000288 3300006028 Bacteria 33950
34 Ga0097621_100137045 3300006237 Bacteria 2088
35 Ga0068871_100245385 3300006358 Bacteria 1558
36 Ga0068871_100783295 3300006358 Bacteria 878
37 Ga0075428_100060610 3300006844 Unclassified 4144
38 Ga0075429_100104230 3300006880 Archaea 2477
39 Ga0097620_100165115 3300006931 Bacteria 2294
40 Ga0111539_11264750 3300009094 Bacteria 857
41 Ga0114129_10055526 3300009147 Bacteria 5550
42 Ga0105248_10090517 3300009177 Bacteria 3445
43 Ga0105248_11700487 3300009177 Unclassified 715
44 Ga0157375_10187459 3300013308 Unclassified 2222
45 Ga0157380_10081609 3300014326 Bacteria 2646
46 Ga0157379_10112181 3300014968 Unclassified 2450
47 Ga0157376_10152217 3300014969 Unclassified 2087
48 Ga0163161_10448222 3300017792 Bacteria 1043
49 Ga0209565_1001563 3300025263 Bacteria 9798
50 Ga0209673_1000788 3300025273 Bacteria 42315
51 Ga0209676_1000163 3300025292 Bacteria 157845
52 Ga0209676_1000188 3300025292 Bacteria 141232
53 Ga0209564_1001719 3300025295 Bacteria 20581
54 Ga0209564_1014450 3300025295 Bacteria 3283
55 Ga0209564_1020524 3300025295 Bacteria 2415
56 Ga0209564_1036474 3300025295 Bacteria 1402
57 Ga0209758_1001421 3300025297 Bacteria 28344
58 Ga0209758_1003640 3300025297 Bacteria 13760
59 Ga0209050_1000589 3300025298 Bacteria 57942
60 Ga0209050_1002823 3300025298 Bacteria 13857
61 Ga0209050_1011720 3300025298 Bacteria 4117
62 Ga0209256_1003316 3300025299 Bacteria 11453
63 Ga0209256_1005151 3300025299 Bacteria 7719
64 Ga0209051_1002408 3300025303 Bacteria 13454
65 Ga0209257_1000224 3300025304 Bacteria 134156
66 Ga0209257_1001816 3300025304 Bacteria 23363
67 Ga0209257_1005451 3300025304 Bacteria 8928
68 Ga0207649_10396865 3300025920 Bacteria 1031
69 Ga0207646_10557771 3300025922 Bacteria 1030
70 Ga0207650_10535118 3300025925 Bacteria 981
71 Ga0207644_10130925 3300025931 Bacteria 1920
72 Ga0207711_10265459 3300025941 Unclassified 1579
73 Ga0207711_10939740 3300025941 Unclassified 803
74 Ga0207679_10270628 3300025945 Bacteria 1453
75 Ga0207651_10009743 3300025960 Bacteria 5281
76 Ga0207651_11723765 3300025960 Bacteria 564
77 Ga0207641_10669466 3300026088 Unclassified 1020
78 Ga0307517_10264642 3300028786 Bacteria 995
79 Ga0307515_10112056 3300028794 Bacteria 3176
80 Ga0307515_10294503 3300028794 Bacteria 1315
81 Ga0265316_10234405 3300031344 Bacteria 1351
82 Ga0307513_10749646 3300031456 Bacteria 682
83 Ga0307509_10176530 3300031507 Unclassified 2008
84 Ga0307411_10914841 3300032005 Bacteria 780
85 Ga0451793_1427064 3300041452 Unclassified 638
86 Ga0451843_0895296 3300041509 Bacteria 811
87 Ga0439445_0069127 3300042004 Bacteria 975
88 Ga0439446_0001256 3300042156 Bacteria 5700
89 Ga0495590_0001846 3300046457 Bacteria 8967
90 Ga0495638_0000370 3300046460 Bacteria 55689
91 Ga0495638_0001904 3300046460 Bacteria 17986
92 Ga0495638_0003322 3300046460 Bacteria 12688
93 Ga0495650_0000068 3300046471 Bacteria 266671
94 Ga0495583_0000002 3300046506 Bacteria 782521
95 Ga0495606_0041299 3300046507 Bacteria 3094
96 Ga0495606_0045960 3300046507 Bacteria 2888
97 Ga0495610_0000111 3300046512 Bacteria 95122
98 Ga0495610_0032096 3300046512 Bacteria 2733
99 Ga0495610_0165739 3300046512 Bacteria 930
100 Ga0495616_0000790 3300046513 Bacteria 23159
101 Ga0495616_0022510 3300046513 Bacteria 3404
102 Ga0495616_0113558 3300046513 Bacteria 1256
103 Ga0495631_0044110 3300046518 Bacteria 1966
104 Ga0495631_0145712 3300046518 Bacteria 1016
105 Ga0495632_0001020 3300046519 Bacteria 24210
106 Ga0495637_0010260 3300046520 Bacteria 4536
107 Ga0495637_0013803 3300046520 Bacteria 3827
108 Ga0495637_0136297 3300046520 Bacteria 934
109 Ga0495648_0000940 3300046524 Bacteria 30217
110 Ga0495648_0198108 3300046524 Bacteria 1008
111 Ga0495654_0000051 3300046530 Bacteria 145932
112 Ga0495654_0047654 3300046530 Bacteria 2106
113 Ga0495609_0078750 3300046538 Bacteria 1442
114 Ga0495609_0123884 3300046538 Bacteria 1110
115 Ga0495597_0059493 3300046542 Bacteria 1668
116 Ga0495668_0000100 3300046616 Bacteria 137684
117 Ga0495668_0027141 3300046616 Bacteria 3244
118 Ga0495668_0032528 3300046616 Bacteria 2934
119 Ga0495668_0044401 3300046616 Bacteria 2470
120 Ga0495668_0108888 3300046616 Bacteria 1515
121 Ga0495625_0002104 3300046660 Bacteria 22238
122 Ga0495625_0003321 3300046660 Bacteria 16205
123 Ga0495625_0005312 3300046660 Bacteria 11797
124 Ga0495625_0012036 3300046660 Bacteria 7020
125 Ga0495625_0051687 3300046660 Bacteria 2945
126 Ga0495670_0073835 3300046691 Bacteria 1729
127 Ga0495671_0033217 3300046692 Bacteria 2630
128 Ga0495660_0018207 3300046810 Bacteria 4038
129 Ga0495683_0083217 3300047323 Bacteria 1558
130 Ga0495679_010454 3300047446 Bacteria 3643
131 Ga0495673_0000381 3300047469 Bacteria 52869
132 Ga0495673_0008626 3300047469 Bacteria 5708
133 Ga0495686_0000932 3300047472 Bacteria 36370
134 Ga0495686_0015355 3300047472 Bacteria 5232
135 Ga0495686_0020735 3300047472 Bacteria 4380
136 Ga0495686_0082712 3300047472 Bacteria 1959
137 Ga0496106_0091058 3300048909 Bacteria 2354
138 Ga0496106_0943629 3300048909 Bacteria 680
139 Ga0496107_0000474 3300048910 Bacteria 22073
140 Ga0496115_0001601 3300048918 Bacteria 16271
141 Ga0496121_0003920 3300048924 Bacteria 20626
142 Ga0496121_0532065 3300048924 Bacteria 739
143 Ga0496124_0017705 3300048927 Bacteria 6705
144 Ga0496124_0677802 3300048927 Bacteria 657
145 Ga0496125_0055303 3300048928 Bacteria 3235
146 Ga0496126_0004137 3300048929 Bacteria 17545
147 Ga0496126_0188880 3300048929 Bacteria 1746
148 Ga0495678_001468 3300049459 Bacteria 18471
149 Ga0501033_0003578 3300049570 Bacteria 12714
150 Ga0501033_0006273 3300049570 Bacteria 9322
151 Ga0501033_0922085 3300049570 Unclassified 586
152 Ga0501034_0009065 3300049571 Bacteria 10449
153 Ga0501036_0591665 3300049572 Bacteria 921
154 Ga0501037_0009192 3300049573 Bacteria 7243
155 Ga0501037_0018366 3300049573 Bacteria 5155
156 Ga0501038_0062377 3300049574 Bacteria 3185
157 Ga0501046_0000692 3300049580 Bacteria 32742
158 Ga0501047_0474605 3300049581 Bacteria 1079
159 Ga0501070_0235165 3300049586 Bacteria 1501
160 Ga0501227_032305 3300049665 Unclassified 1262
161 Ga0501238_005797 3300049671 Bacteria 1578
162 Ga0501243_009859 3300049675 Bacteria 1486
163 Ga0501080_0125699 3300049742 Unclassified 2375
164 Ga0501265_039051 3300049762 Bacteria 712
165 Ga0501035_0066461 3300049822 Unclassified 3200
166 Ga0501044_0000796 3300049823 Bacteria 38157
167 Ga0501044_0043732 3300049823 Bacteria 4651
168 Ga0501045_0909615 3300049824 Bacteria 646
169 nmdc:mga0k408_36233_c1 3300050493 Bacteria 2831
170 nmdc:mga0k408_424765_c1 3300050493 Bacteria 790
171 nmdc:mga05p37_20102_c1 3300050507 Bacteria 8080
172 nmdc:mga09592_114521_c1 3300050508 Unclassified 2314
173 nmdc:mga0sz30_89521_c1 3300050516 Bacteria 1338
174 Ga0500578_0002060 3300053086 Bacteria 17968
175 Ga0500644_0000154 3300053088 Bacteria 42962
176 Ga0500644_0017581 3300053088 Bacteria 2079
177 Ga0500554_005412 3300053102 Bacteria 2781
178 Ga0500556_0000650 3300053104 Bacteria 21730
179 Ga0500562_004859 3300053108 Bacteria 3385
180 Ga0500594_0000737 3300053118 Bacteria 6946
181 Ga0500597_218660 3300053120 Bacteria 793
182 Ga0500608_000027 3300053122 Bacteria 66998
183 Ga0500618_001054 3300053125 Bacteria 13734
184 Ga0500658_0002759 3300053134 Bacteria 6757
185 Ga0500559_0006775 3300053136 Bacteria 5143
186 Ga0500564_000124 3300053138 Bacteria 19584
187 Ga0500568_0085345 3300053139 Bacteria 1195
188 Ga0500616_0048136 3300053153 Bacteria 2261
189 Ga0500616_0119073 3300053153 Unclassified 1264
190 Ga0500622_0003072 3300053156 Bacteria 11513
191 Ga0500622_0019917 3300053156 Bacteria 3562
192 Ga0500622_0053307 3300053156 Bacteria 2077
193 Ga0500627_0053060 3300053158 Bacteria 1770
194 Ga0500645_019943 3300053730 Bacteria 2081
195 Ga0500609_002552 3300053731 Bacteria 2595

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049574 Ga0501038_0062377 Ga0501038_0062377_1412_1867 143
2 3300031344 Ga0265316_10234405 Ga0265316_102344051 147
3 3300041452 Ga0451793_1427064 Ga0451793_1427064_15_485 147
4 iso_pu_bacteria 2857504554 2857507962 156
5 3300005355 Ga0070671_100011355 Ga0070671_1000113555 157
6 3300005364 Ga0070673_100017243 Ga0070673_1000172435 157
7 3300005468 Ga0070707_100743428 Ga0070707_1007434282 157
8 3300025922 Ga0207646_10557771 Ga0207646_105577712 157
9 3300025931 Ga0207644_10130925 Ga0207644_101309253 157
10 3300025960 Ga0207651_10009743 Ga0207651_100097432 157
11 3300005353 Ga0070669_100256802 Ga0070669_1002568022 158
12 3300005365 Ga0070688_100582510 Ga0070688_1005825102 158
13 3300006358 Ga0068871_100783295 Ga0068871_1007832951 158
14 3300009094 Ga0111539_11264750 Ga0111539_112647501 158
15 3300046616 Ga0495668_0044401 Ga0495668_0044401_1931_2443 158
16 iso_pu_bacteria 2786546940 2788434126 158
17 3300003773 Ga0055537_1004011 Ga0055537_10040112 159
18 3300003790 Ga0055528_1002211 Ga0055528_10022116 159
19 3300006844 Ga0075428_100060610 Ga0075428_1000606104 159
20 3300006880 Ga0075429_100104230 Ga0075429_1001042303 159
21 3300009147 Ga0114129_10055526 Ga0114129_100555264 159
22 3300025263 Ga0209565_1001563 Ga0209565_10015638 159
23 3300025273 Ga0209673_1000788 Ga0209673_100078828 159
24 3300025295 Ga0209564_1036474 Ga0209564_10364742 159
25 3300025297 Ga0209758_1003640 Ga0209758_10036404 159
26 3300025299 Ga0209256_1003316 Ga0209256_10033165 159
27 3300049571 Ga0501034_0009065 Ga0501034_0009065_3241_3741 159
28 3300050507 nmdc:mga05p37_20102_c1 nmdc:mga05p37_20102_c1_3281_3781 159
29 3300050508 nmdc:mga09592_114521_c1 nmdc:mga09592_114521_c1_674_1174 159
30 iso_pu_bacteria 2585428106 2587915437 159
31 iso_pu_bacteria 2643221640 2644223994 159
32 iso_pu_bacteria 2643221642 2644232980 159
33 iso_pu_bacteria 2928531327 2928534884 159
34 3300003781 Ga0055536_1003037 Ga0055536_10030375 160
35 3300003791 Ga0055530_10007429 Ga0055530_100074291 160
36 3300003794 Ga0055531_10003048 Ga0055531_100030488 160
37 3300025292 Ga0209676_1000188 Ga0209676_1000188106 160
38 3300025298 Ga0209050_1002823 Ga0209050_100282313 160
39 3300025304 Ga0209257_1001816 Ga0209257_100181611 160
40 3300048909 Ga0496106_0943629 Ga0496106_0943629_101_601 160
41 3300048924 Ga0496121_0532065 Ga0496121_0532065_182_682 160
42 3300048929 Ga0496126_0188880 Ga0496126_0188880_459_959 160
43 3300049570 Ga0501033_0003578 Ga0501033_0003578_6167_6667 160
44 3300049573 Ga0501037_0018366 Ga0501037_0018366_4631_5131 160
45 3300049823 Ga0501044_0000796 Ga0501044_0000796_16978_17478 160
46 3300053122 Ga0500608_000027 Ga0500608_000027_42499_42999 160
47 3300053136 Ga0500559_0006775 Ga0500559_0006775_1867_2367 160
48 3300053156 Ga0500622_0019917 Ga0500622_0019917_356_856 160
49 iso_pu_bacteria 2582581279 2585149068 160
50 iso_pu_bacteria 2582581280 2585151860 160
51 iso_pu_bacteria 2582581293 2585194654 160
52 iso_pu_bacteria 2643221545 2643748493 160
53 iso_pu_bacteria 2643221552 2643778869 160
54 iso_pu_bacteria 2643221584 2643930715 160
55 iso_pu_bacteria 2643221691 2644510167 160
56 iso_pu_bacteria 2818991435 2819537228 160
57 iso_pu_bacteria 2818991454 2819645640 160
58 3300005334 Ga0068869_100508404 Ga0068869_1005084041 161
59 3300005340 Ga0070689_100078183 Ga0070689_1000781833 161
60 3300005364 Ga0070673_100795001 Ga0070673_1007950011 161
61 3300005364 Ga0070673_100907331 Ga0070673_1009073312 161
62 3300005438 Ga0070701_10119457 Ga0070701_101194572 161
63 3300005459 Ga0068867_100711207 Ga0068867_1007112071 161
64 3300005466 Ga0070685_11051030 Ga0070685_110510301 161
65 3300005543 Ga0070672_100207755 Ga0070672_1002077552 161
66 3300005564 Ga0070664_100090872 Ga0070664_1000908721 161
67 3300005617 Ga0068859_100165101 Ga0068859_1001651013 161
68 3300005719 Ga0068861_101600014 Ga0068861_1016000141 161
69 3300005841 Ga0068863_100272066 Ga0068863_1002720663 161
70 3300005841 Ga0068863_100564739 Ga0068863_1005647392 161
71 3300005842 Ga0068858_101047050 Ga0068858_1010470502 161
72 3300006237 Ga0097621_100137045 Ga0097621_1001370454 161
73 3300006358 Ga0068871_100245385 Ga0068871_1002453852 161
74 3300006931 Ga0097620_100165115 Ga0097620_1001651153 161
75 3300009177 Ga0105248_10090517 Ga0105248_100905173 161
76 3300009177 Ga0105248_11700487 Ga0105248_117004871 161
77 3300013308 Ga0157375_10187459 Ga0157375_101874592 161
78 3300014326 Ga0157380_10081609 Ga0157380_100816092 161
79 3300014968 Ga0157379_10112181 Ga0157379_101121813 161
80 3300014969 Ga0157376_10152217 Ga0157376_101522172 161
81 3300017792 Ga0163161_10448222 Ga0163161_104482221 161
82 3300025920 Ga0207649_10396865 Ga0207649_103968652 161
83 3300025925 Ga0207650_10535118 Ga0207650_105351182 161
84 3300025941 Ga0207711_10265459 Ga0207711_102654592 161
85 3300025941 Ga0207711_10939740 Ga0207711_109397401 161
86 3300025945 Ga0207679_10270628 Ga0207679_102706281 161
87 3300025960 Ga0207651_11723765 Ga0207651_117237651 161
88 3300026088 Ga0207641_10669466 Ga0207641_106694662 161
89 3300031507 Ga0307509_10176530 Ga0307509_101765302 161
90 3300049570 Ga0501033_0922085 Ga0501033_0922085_22_534 161
91 3300053139 Ga0500568_0085345 Ga0500568_0085345_170_682 161
92 3300006028 Ga0070717_10000288 Ga0070717_100002882 162
93 3300049581 Ga0501047_0474605 Ga0501047_0474605_234_743 162
94 3300003322 rootL2_10053109 rootL2_100531091 163
95 3300003781 Ga0055536_1002445 Ga0055536_10024457 163
96 3300003791 Ga0055530_10030331 Ga0055530_100303312 163
97 3300003794 Ga0055531_10032278 Ga0055531_100322782 163
98 3300025292 Ga0209676_1000163 Ga0209676_100016349 163
99 3300025295 Ga0209564_1020524 Ga0209564_10205243 163
100 3300025298 Ga0209050_1000589 Ga0209050_100058950 163
101 3300025303 Ga0209051_1002408 Ga0209051_10024083 163
102 3300025304 Ga0209257_1000224 Ga0209257_100022477 163
103 3300025304 Ga0209257_1005451 Ga0209257_10054516 163
104 3300031456 Ga0307513_10749646 Ga0307513_107496461 163
105 3300032005 Ga0307411_10914841 Ga0307411_109148412 163
106 3300041509 Ga0451843_0895296 Ga0451843_0895296_82_603 163
107 3300042004 Ga0439445_0069127 Ga0439445_0069127_41_562 163
108 3300046507 Ga0495606_0041299 Ga0495606_0041299_160_675 163
109 3300046518 Ga0495631_0145712 Ga0495631_0145712_328_840 163
110 3300046538 Ga0495609_0123884 Ga0495609_0123884_173_682 163
111 3300046616 Ga0495668_0000100 Ga0495668_0000100_59071_59580 163
112 3300046616 Ga0495668_0108888 Ga0495668_0108888_213_728 163
113 3300046660 Ga0495625_0051687 Ga0495625_0051687_2142_2672 163
114 3300047446 Ga0495679_010454 Ga0495679_010454_1534_2046 163
115 3300048927 Ga0496124_0017705 Ga0496124_0017705_1535_2044 163
116 3300048927 Ga0496124_0677802 Ga0496124_0677802_73_594 163
117 3300048928 Ga0496125_0055303 Ga0496125_0055303_1901_2422 163
118 3300048929 Ga0496126_0004137 Ga0496126_0004137_6671_7192 163
119 3300049570 Ga0501033_0006273 Ga0501033_0006273_3622_4140 163
120 3300049572 Ga0501036_0591665 Ga0501036_0591665_311_829 163
121 3300049573 Ga0501037_0009192 Ga0501037_0009192_4985_5503 163
122 3300049580 Ga0501046_0000692 Ga0501046_0000692_9930_10448 163
123 3300049586 Ga0501070_0235165 Ga0501070_0235165_349_870 163
124 3300049665 Ga0501227_032305 Ga0501227_032305_532_1140 163
125 3300049675 Ga0501243_009859 Ga0501243_009859_323_844 163
126 3300049742 Ga0501080_0125699 Ga0501080_0125699_298_816 163
127 3300049762 Ga0501265_039051 Ga0501265_039051_171_692 163
128 3300049822 Ga0501035_0066461 Ga0501035_0066461_1579_2097 163
129 3300049823 Ga0501044_0043732 Ga0501044_0043732_3211_3729 163
130 3300049824 Ga0501045_0909615 Ga0501045_0909615_77_595 163
131 3300050493 nmdc:mga0k408_36233_c1 nmdc:mga0k408_36233_c1_2036_2566 163
132 3300050516 nmdc:mga0sz30_89521_c1 nmdc:mga0sz30_89521_c1_63_572 163
133 3300053102 Ga0500554_005412 Ga0500554_005412_615_1130 163
134 3300053125 Ga0500618_001054 Ga0500618_001054_3046_3558 163
135 3300053153 Ga0500616_0119073 Ga0500616_0119073_314_829 163
136 3300053156 Ga0500622_0053307 Ga0500622_0053307_999_1529 163
137 iso_pu_bacteria 2884960567 2884965811 163
138 3300003215 JGI25153J46596_10032989 JGI25153J46596_100329892 164
139 3300003771 Ga0055526_1023847 Ga0055526_10238473 164
140 3300003775 Ga0055524_1010793 Ga0055524_10107933 164
141 3300005262 Ga0065165_1001108 Ga0065165_100110841 164
142 3300025295 Ga0209564_1001719 Ga0209564_100171912 164
143 3300025295 Ga0209564_1014450 Ga0209564_10144504 164
144 3300025297 Ga0209758_1001421 Ga0209758_10014219 164
145 3300025298 Ga0209050_1011720 Ga0209050_10117205 164
146 3300025299 Ga0209256_1005151 Ga0209256_10051516 164
147 3300028786 Ga0307517_10264642 Ga0307517_102646422 164
148 3300028794 Ga0307515_10112056 Ga0307515_101120564 164
149 3300028794 Ga0307515_10294503 Ga0307515_102945033 164
150 3300042156 Ga0439446_0001256 Ga0439446_0001256_2047_2559 164
151 3300046457 Ga0495590_0001846 Ga0495590_0001846_8311_8829 164
152 3300046460 Ga0495638_0000370 Ga0495638_0000370_50913_51431 164
153 3300046460 Ga0495638_0001904 Ga0495638_0001904_5561_6091 164
154 3300046460 Ga0495638_0003322 Ga0495638_0003322_2564_3079 164
155 3300046471 Ga0495650_0000068 Ga0495650_0000068_166760_167275 164
156 3300046506 Ga0495583_0000002 Ga0495583_0000002_696548_697060 164
157 3300046507 Ga0495606_0045960 Ga0495606_0045960_1951_2463 164
158 3300046512 Ga0495610_0000111 Ga0495610_0000111_90500_91015 164
159 3300046512 Ga0495610_0032096 Ga0495610_0032096_1195_1713 164
160 3300046512 Ga0495610_0165739 Ga0495610_0165739_366_881 164
161 3300046513 Ga0495616_0000790 Ga0495616_0000790_10063_10593 164
162 3300046513 Ga0495616_0022510 Ga0495616_0022510_176_694 164
163 3300046513 Ga0495616_0113558 Ga0495616_0113558_702_1217 164
164 3300046518 Ga0495631_0044110 Ga0495631_0044110_420_938 164
165 3300046519 Ga0495632_0001020 Ga0495632_0001020_11360_11890 164
166 3300046520 Ga0495637_0010260 Ga0495637_0010260_860_1375 164
167 3300046520 Ga0495637_0013803 Ga0495637_0013803_512_1027 164
168 3300046520 Ga0495637_0136297 Ga0495637_0136297_301_831 164
169 3300046524 Ga0495648_0000940 Ga0495648_0000940_20011_20526 164
170 3300046524 Ga0495648_0198108 Ga0495648_0198108_383_913 164
171 3300046530 Ga0495654_0000051 Ga0495654_0000051_45975_46490 164
172 3300046530 Ga0495654_0047654 Ga0495654_0047654_369_887 164
173 3300046538 Ga0495609_0078750 Ga0495609_0078750_297_827 164
174 3300046542 Ga0495597_0059493 Ga0495597_0059493_131_646 164
175 3300046616 Ga0495668_0027141 Ga0495668_0027141_566_1096 164
176 3300046616 Ga0495668_0032528 Ga0495668_0032528_1084_1602 164
177 3300046660 Ga0495625_0002104 Ga0495625_0002104_17100_17612 164
178 3300046660 Ga0495625_0003321 Ga0495625_0003321_6300_6815 164
179 3300046660 Ga0495625_0005312 Ga0495625_0005312_3833_4348 164
180 3300046660 Ga0495625_0012036 Ga0495625_0012036_2644_3159 164
181 3300046691 Ga0495670_0073835 Ga0495670_0073835_179_694 164
182 3300046692 Ga0495671_0033217 Ga0495671_0033217_142_660 164
183 3300046810 Ga0495660_0018207 Ga0495660_0018207_875_1387 164
184 3300047323 Ga0495683_0083217 Ga0495683_0083217_274_786 164
185 3300047469 Ga0495673_0000381 Ga0495673_0000381_11312_11827 164
186 3300047469 Ga0495673_0008626 Ga0495673_0008626_4270_4785 164
187 3300047472 Ga0495686_0000932 Ga0495686_0000932_31849_32367 164
188 3300047472 Ga0495686_0015355 Ga0495686_0015355_2013_2528 164
189 3300047472 Ga0495686_0020735 Ga0495686_0020735_1918_2430 164
190 3300047472 Ga0495686_0082712 Ga0495686_0082712_212_724 164
191 3300048909 Ga0496106_0091058 Ga0496106_0091058_641_1171 164
192 3300048910 Ga0496107_0000474 Ga0496107_0000474_18254_18784 164
193 3300048918 Ga0496115_0001601 Ga0496115_0001601_5136_5648 164
194 3300048924 Ga0496121_0003920 Ga0496121_0003920_18425_18955 164
195 3300049459 Ga0495678_001468 Ga0495678_001468_12671_13189 164
196 3300049671 Ga0501238_005797 Ga0501238_005797_293_805 164
197 3300050493 nmdc:mga0k408_424765_c1 nmdc:mga0k408_424765_c1_210_722 164
198 3300053086 Ga0500578_0002060 Ga0500578_0002060_5019_5537 164
199 3300053088 Ga0500644_0000154 Ga0500644_0000154_38514_39029 164
200 3300053088 Ga0500644_0017581 Ga0500644_0017581_862_1380 164
201 3300053104 Ga0500556_0000650 Ga0500556_0000650_12929_13444 164
202 3300053108 Ga0500562_004859 Ga0500562_004859_2004_2522 164
203 3300053118 Ga0500594_0000737 Ga0500594_0000737_727_1245 164
204 3300053120 Ga0500597_218660 Ga0500597_218660_37_552 164
205 3300053134 Ga0500658_0002759 Ga0500658_0002759_3978_4493 164
206 3300053138 Ga0500564_000124 Ga0500564_000124_16556_17071 164
207 3300053153 Ga0500616_0048136 Ga0500616_0048136_221_736 164
208 3300053156 Ga0500622_0003072 Ga0500622_0003072_4852_5370 164
209 3300053158 Ga0500627_0053060 Ga0500627_0053060_200_715 164
210 3300053730 Ga0500645_019943 Ga0500645_019943_1254_1769 164
211 3300053731 Ga0500609_002552 Ga0500609_002552_1583_2113 164

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

126

178

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

30

97

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
8hno-assembly1.cif.gz_B archaeal transcription factor wild type 0.921 110 155
3c57-assembly1.cif.gz_A crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain crystal form ii 0.8833 111 154
3hug-assembly1.cif.gz_C crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8745 93 161
3hug-assembly6.cif.gz_A crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8681 92 159
3hug-assembly2.cif.gz_E crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl 0.8676 93 161
ID Description Score Start End Superfamily
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.916 97 159 1.10.10.10
1zr4D03 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9112 115 148 1.10.10.60
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9094 106 155 1.10.10.10
3kloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9033 107 149 1.10.10.10
1zr2B03 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9022 115 147 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A7V9GNE8-F1-model_v4 Sigma-70 region 4 domain-containing protein 0.9508 97 161 GO:0003677
GO:0006352
GO:0016987
AF-A0A520HYU4-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.9435 9 85 GO:0003700
GO:0006352
AF-A0A2Z5GBL6-F1-model_v4 RNA polymerase sigma-54 factor RpoN 0.9362 92 163 GO:0003677
GO:0006352
GO:0016987
AF-A0A1H6M411-F1-model_v4 RNA polymerase sigma-70 factor, ECF subfamily 0.9359 97 161 GO:0003677
GO:0006352
GO:0016987
AF-A0A0F9M4H1-F1-model_v4 RNA polymerase sigma factor 70 region 4 type 2 domain-containing protein 0.935 91 158 GO:0003677
GO:0006352
GO:0016987

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pLDDT pTM Quality
90.91 0.53 Medium
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Predicted Structure (AlphaFold2)

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