F322243

General Info

Members Datasets Scaffolds Average Seq Length
211 183 149 302

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8006994254|8006995544
Length 349
Sequence KRRGAPVGRSRISKGPESSIIGMLRWVLLYFWTGRIGQCHDRFALCANCIDMDLDWLKDFLALAELKGFSRAADARNVTQPAFSRRIRALEDWIGTPLFVRGAQGASLTPAGQHFQPLAADMIRSLERARRDTRSVGERNTITLSIAATHALSFTFFPEWIRNHLRFEALGTLSLVSESMEACEEIMLGGEVHFLLCHYHPEAPTRFEPDRFQSVRVGDDCLVPLCAPDSGGRPAWPLSDTSARPIRLLAYSHASGLGRILSAHQMSRDAIAQMEAGFTSHLAATLMTMAREGHGVAWLPRTLAKHDLEQGRLVGAGPPQFDIPIEIRLFRSPDCRNHAADELWHALAQ

Samples

Sample ID Description Type Environment
1 2508501050 Microvirga lupini Lut6 Isolate Nodule
2 2511231028 Bradyrhizobium sp. YR681 Isolate Rhizosphere
3 2513237101 Bradyrhizobium murdochi WSM1741 Isolate Nodule
4 2524023205 Bradyrhizobium sp. Cp5.3 Isolate Nodule
5 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
6 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
7 2643221557 Ensifer sp. Root558 Isolate Unclassified
8 2643221610 Ensifer sp. Root74 Isolate Unclassified
9 2643221618 Ensifer sp. Root231 Isolate Unclassified
10 2643221626 Ensifer sp. Root31 Isolate Unclassified
11 2643221655 Ensifer sp. Root1252 Isolate Unclassified
12 2643221659 Ensifer sp. Root127 Isolate Unclassified
13 2643221668 Ensifer sp. Root423 Isolate Unclassified
14 2643221675 Ensifer sp. Root1298 Isolate Unclassified
15 2643221680 Ensifer sp. Root1312 Isolate Unclassified
16 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified
17 2643221698 Ensifer sp. Root142 Isolate Unclassified
18 2643221712 Ensifer sp. Root258 Isolate Unclassified
19 2643221723 Ensifer sp. Root278 Isolate Unclassified
20 2643221726 Ensifer sp. Root954 Isolate Unclassified
21 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
22 2738543024 Aminobacter sp. AP02 Isolate Unclassified
23 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
24 2744054633 Bradyrhizobium neotropicale BR 10247 Isolate Unclassified
25 2751185800 Brucella pituitosa AA2 Isolate Unclassified
26 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
27 2775506901 Microvirga ossetica V5/3m Isolate Unclassified
28 2791355196 Bradyrhizobium sp. Y36 Isolate Nodule
29 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
30 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
31 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
32 2844163670 Ensifer sp. 1H6 Isolate Unclassified
33 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
34 2856320880 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Isolate Nodule
35 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
36 2874139085 Mesorhizobium sp. M8A.F.Ca.ET.207.01.1.1 Isolate Nodule
37 2878738818 Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 Isolate Nodule
38 2888337043 Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 Isolate Nodule
39 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
40 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
41 2902330777 Methylobacterium sp. 2A Isolate Unclassified
42 2924718760 Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 Isolate Nodule
43 2924776078 Mesorhizobium sp. M8A.F.Ca.ET.213.01.1.1 Isolate Nodule
44 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
45 2937877337 Mesorhizobium sp. M8A.F.Ca.ET.161.01.1.1 Isolate Nodule
46 2937972304 Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 Isolate Nodule
47 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
48 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
49 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
50 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
51 2958084443 Mesorhizobium sp. M8A.F.Ca.ET.142.01.1.1 Isolate Nodule
52 2958092219 Mesorhizobium sp. M8A.F.Ca.ET.059.01.1.1 Isolate Nodule
53 2958144490 Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 Isolate Nodule
54 2968016561 Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 Isolate Nodule
55 2970469710 Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 Isolate Nodule
56 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
57 2996348954 Mesorhizobium sp. M8A.F.Ca.ET.167.01.1.1 Isolate Nodule
58 3004275668 Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 Isolate Nodule
59 3004289098 Mesorhizobium sp. M8A.F.Ca.ET.023.02.2.1 Isolate Nodule
60 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
61 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
62 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
63 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
64 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
65 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
66 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
67 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
68 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
69 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
70 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
71 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
72 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
73 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
74 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
75 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
76 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
77 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
78 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
79 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
80 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
81 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
82 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
83 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
84 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
85 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
86 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
87 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
88 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
89 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
90 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
92 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
94 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
96 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
97 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
98 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
99 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
100 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
106 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
107 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
108 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
109 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
110 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
111 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
112 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
113 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
114 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
115 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
116 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
117 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
118 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
119 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
120 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
121 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
122 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
123 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
124 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
125 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
126 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
127 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
128 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
129 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
130 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
131 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
132 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
133 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
134 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
135 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
136 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
137 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
138 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
139 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
140 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
141 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
142 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
143 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
144 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
151 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
152 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
153 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
154 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
155 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
157 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
158 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
159 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
160 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
161 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
162 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
163 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
164 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
165 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
166 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
167 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
168 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
169 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
170 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
171 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
172 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
173 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
174 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
175 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
176 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
177 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
178 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
179 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
180 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
181 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
182 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
183 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 70.62
Metatranscriptomes 0
Isolates 29.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 30.33
Nodule 13.74
Rhizoplane 1.42
Rhizosphere 34.12
Stem 0
Stem Tuber 0
Unclassified 20.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1002557 3300002739 Bacteria 2936
2 JGI25159J45721_1000024 3300002987 Bacteria 116245
3 JGI25151J46595_10009346 3300003187 Bacteria 4649
4 rootL2_10035732 3300003322 Bacteria 2046
5 JGI25160J50197_1000063 3300003354 Bacteria 116245
6 JGI25161J50226_1000358 3300003374 Bacteria 23639
7 Ga0055542_1000669 3300003762 Bacteria 27785
8 Ga0055529_1001255 3300003763 Bacteria 9328
9 Ga0055526_1002320 3300003771 Bacteria 12959
10 Ga0055524_1000541 3300003775 Bacteria 28606
11 Ga0055536_1017613 3300003781 Bacteria 2328
12 Ga0055530_10020506 3300003791 Bacteria 1973
13 Ga0055531_10047033 3300003794 Bacteria 1179
14 Ga0055543_1000197 3300004625 Bacteria 49269
15 Ga0065165_1000163 3300005262 Bacteria 116283
16 Ga0070714_100128421 3300005435 Bacteria 2263
17 Ga0070693_100086998 3300005547 Bacteria 1876
18 Ga0070665_100036705 3300005548 Bacteria 4928
19 Ga0075363_100016365 3300006048 Bacteria 3663
20 Ga0075364_10001751 3300006051 Bacteria 11979
21 Ga0075362_10000572 3300006177 Bacteria 10752
22 Ga0075369_10001148 3300006186 Bacteria 8929
23 Ga0075366_10017119 3300006195 Bacteria 4167
24 Ga0075366_10038520 3300006195 Bacteria 2824
25 Ga0075370_10118170 3300006353 Bacteria 1542
26 Ga0075428_100212000 3300006844 Bacteria 2093
27 Ga0105243_10039078 3300009148 Bacteria 3698
28 Ga0105239_10208039 3300010375 Bacteria 2192
29 Ga0157380_10151739 3300014326 Bacteria 2004
30 Ga0182008_10128099 3300014497 Bacteria 1264
31 Ga0209436_100312 3300025208 Bacteria 22320
32 Ga0209148_1000411 3300025254 Bacteria 49197
33 Ga0209565_1016263 3300025263 Bacteria 1658
34 Ga0209455_1000150 3300025272 Bacteria 130892
35 Ga0209130_1000138 3300025284 Bacteria 116297
36 Ga0209130_1001566 3300025284 Bacteria 14457
37 Ga0209676_1002930 3300025292 Bacteria 11146
38 Ga0209025_1000602 3300025294 Bacteria 64825
39 Ga0209564_1000250 3300025295 Bacteria 114790
40 Ga0209256_1000406 3300025299 Bacteria 68202
41 Ga0209256_1000623 3300025299 Bacteria 48795
42 Ga0209256_1001568 3300025299 Bacteria 22481
43 Ga0207426_1000092 3300025302 Bacteria 278907
44 Ga0207426_1000255 3300025302 Bacteria 116297
45 Ga0209051_1038650 3300025303 Bacteria 1734
46 Ga0209257_1041636 3300025304 Bacteria 1361
47 Ga0207664_10160852 3300025929 Bacteria 1915
48 Ga0207709_10112993 3300025935 Bacteria 1820
49 Ga0207698_10156453 3300026142 Bacteria 1987
50 Ga0268265_10208301 3300028380 Bacteria 1702
51 Ga0307513_10046924 3300031456 Bacteria 4704
52 Ga0307513_10290970 3300031456 Unclassified 1405
53 Ga0307410_10103683 3300031852 Bacteria 2043
54 Ga0307406_10380812 3300031901 Bacteria 1112
55 Ga0307409_100035483 3300031995 Bacteria 3655
56 Ga0307409_100145600 3300031995 Bacteria 2048
57 Ga0307416_100224009 3300032002 Bacteria 1806
58 Ga0307414_10164335 3300032004 Bacteria 1767
59 Ga0307414_10234437 3300032004 Bacteria 1515
60 Ga0307415_100080407 3300032126 Bacteria 2325
61 Ga0373933_0243303 3300035724 Bacteria 1157
62 Ga0436364_0066898 3300037853 Bacteria 1775
63 Ga0395901_0136549 3300038443 Bacteria 2577
64 Ga0436365_0474626 3300039437 Bacteria 2136
65 Ga0436363_0755639 3300039450 Bacteria 2856
66 Ga0436362_0971458 3300039453 Unclassified 1239
67 Ga0439439_0055135 3300041406 Bacteria 1048
68 Ga0450923_008146 3300042125 Bacteria 1794
69 Ga0453683_0107698 3300044673 Bacteria 1752
70 Ga0466968_0004463 3300044735 Bacteria 5234
71 Ga0466960_0033969 3300044901 Bacteria 2374
72 Ga0451576_0002365 3300045051 Bacteria 28437
73 Ga0451576_0137316 3300045051 Bacteria 2550
74 Ga0451576_0316310 3300045051 Bacteria 1633
75 Ga0495638_0000925 3300046460 Bacteria 29816
76 Ga0495638_0002055 3300046460 Bacteria 17094
77 Ga0495638_0002448 3300046460 Bacteria 15154
78 Ga0495638_0115063 3300046460 Bacteria 1594
79 Ga0495650_0000017 3300046471 Bacteria 542552
80 Ga0495606_0010001 3300046507 Bacteria 7932
81 Ga0495610_0000097 3300046512 Bacteria 101920
82 Ga0495637_0001284 3300046520 Bacteria 15136
83 Ga0495648_0000525 3300046524 Bacteria 41255
84 Ga0495648_0023352 3300046524 Bacteria 4237
85 Ga0495654_0000012 3300046530 Bacteria 328997
86 Ga0495668_0000006 3300046616 Bacteria 553404
87 Ga0495625_0000153 3300046660 Bacteria 105123
88 Ga0495625_0004896 3300046660 Bacteria 12477
89 Ga0495625_0015658 3300046660 Bacteria 5997
90 Ga0495625_0058912 3300046660 Bacteria 2726
91 Ga0495672_0015002 3300047320 Bacteria 5279
92 Ga0495672_0018995 3300047320 Bacteria 4546
93 Ga0495673_0000556 3300047469 Bacteria 38135
94 Ga0496105_0108224 3300048908 Bacteria 2295
95 Ga0496115_0258156 3300048918 Bacteria 1433
96 Ga0496118_0046643 3300048921 Bacteria 3368
97 Ga0496118_0115211 3300048921 Bacteria 1770
98 Ga0496119_0007269 3300048922 Bacteria 10019
99 Ga0496120_0015837 3300048923 Bacteria 4954
100 Ga0496122_0034297 3300048925 Bacteria 4155
101 Ga0496124_0038763 3300048927 Bacteria 4135
102 Ga0496125_0000290 3300048928 Bacteria 99343
103 Ga0496125_0001277 3300048928 Bacteria 37394
104 Ga0496125_0099628 3300048928 Bacteria 2145
105 Ga0496126_0006198 3300048929 Bacteria 13378
106 Ga0501031_0020190 3300049568 Bacteria 4343
107 Ga0501036_0103571 3300049572 Bacteria 2407
108 Ga0501036_0183340 3300049572 Bacteria 1762
109 Ga0501038_0330240 3300049574 Bacteria 1191
110 Ga0501041_0046748 3300049577 Bacteria 2634
111 Ga0501043_0162922 3300049579 Bacteria 1742
112 Ga0501046_0134435 3300049580 Bacteria 1874
113 Ga0501071_0106407 3300049587 Bacteria 2071
114 Ga0501075_0022689 3300049591 Bacteria 4587
115 Ga0501076_0293427 3300049592 Bacteria 1332
116 Ga0501079_0299951 3300049741 Bacteria 1257
117 Ga0501081_0050550 3300049743 Bacteria 2864
118 Ga0501035_0091508 3300049822 Bacteria 2677
119 Ga0501035_0330410 3300049822 Bacteria 1279
120 Ga0501044_0044378 3300049823 Bacteria 4613
121 nmdc:mga03683_19058_c1 3300050489 Bacteria 2616
122 nmdc:mga00v17_11517_c1 3300050491 Bacteria 4862
123 nmdc:mga00v17_12144_c1 3300050491 Bacteria 4746
124 nmdc:mga00v17_56295_c1 3300050491 Bacteria 2404
125 nmdc:mga0yw44_5221_c1 3300050492 Bacteria 6089
126 nmdc:mga0k408_8282_c1 3300050493 Bacteria 5578
127 nmdc:mga06z11_71466_c1 3300050494 Bacteria 1837
128 nmdc:mga07m45_116323_c1 3300050496 Bacteria 1542
129 nmdc:mga0sz30_11112_c1 3300050516 Bacteria 3466
130 Ga0500643_000210 3300053087 Bacteria 55059
131 Ga0500643_028583 3300053087 Bacteria 1723
132 Ga0500644_0000012 3300053088 Bacteria 117525
133 Ga0500583_0023187 3300053092 Bacteria 2612
134 Ga0500566_0000908 3300053094 Bacteria 16964
135 Ga0500555_018319 3300053103 Bacteria 2018
136 Ga0500556_0000240 3300053104 Bacteria 44438
137 Ga0500556_0038563 3300053104 Bacteria 1668
138 Ga0500642_0097024 3300053130 Bacteria 1367
139 Ga0500658_0002599 3300053134 Bacteria 6971
140 Ga0500564_000050 3300053138 Bacteria 30326
141 Ga0500568_0023584 3300053139 Bacteria 2616
142 Ga0500577_0009470 3300053142 Bacteria 2829
143 Ga0500604_0045676 3300053151 Bacteria 1337
144 Ga0500627_0004175 3300053158 Bacteria 4593
145 Ga0500627_0111566 3300053158 Bacteria 1231
146 Ga0500634_0119158 3300053161 Bacteria 1288
147 Ga0500636_0065083 3300053177 Bacteria 2122
148 Ga0501084_0239068 3300054114 Bacteria 1533
149 Ga0501082_0217286 3300060353 Bacteria 1663

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2513237101 2513696979 246
2 3300049587 Ga0501071_0106407 Ga0501071_0106407_639_1547 259
3 3300049572 Ga0501036_0103571 Ga0501036_0103571_761_1669 261
4 3300049577 Ga0501041_0046748 Ga0501041_0046748_220_1128 261
5 3300049580 Ga0501046_0134435 Ga0501046_0134435_438_1346 261
6 3300049591 Ga0501075_0022689 Ga0501075_0022689_436_1344 261
7 3300049592 Ga0501076_0293427 Ga0501076_0293427_244_1152 261
8 3300049741 Ga0501079_0299951 Ga0501079_0299951_117_1025 261
9 3300049743 Ga0501081_0050550 Ga0501081_0050550_728_1636 261
10 3300049822 Ga0501035_0330410 Ga0501035_0330410_55_963 261
11 3300060353 Ga0501082_0217286 Ga0501082_0217286_377_1285 261
12 3300044673 Ga0453683_0107698 Ga0453683_0107698_471_1340 268
13 3300045051 Ga0451576_0002365 Ga0451576_0002365_16767_17636 268
14 3300045051 Ga0451576_0316310 Ga0451576_0316310_614_1486 269
15 3300045051 Ga0451576_0137316 Ga0451576_0137316_64_939 270
16 iso_pu_bacteria 2844533157 2844535816 270
17 3300049572 Ga0501036_0183340 Ga0501036_0183340_855_1751 271
18 iso_pu_bacteria 2524023205 2524436322 272
19 iso_pu_bacteria 2738541281 2738743433 272
20 iso_pu_bacteria 2738543032 2739352340 272
21 iso_pu_bacteria 2744054633 2745080723 272
22 3300044901 Ga0466960_0033969 Ga0466960_0033969_1298_2218 273
23 3300006186 Ga0075369_10001148 Ga0075369_100011489 274
24 3300025284 Ga0209130_1001566 Ga0209130_10015666 274
25 3300025302 Ga0207426_1000092 Ga0207426_100009253 274
26 3300046660 Ga0495625_0000153 Ga0495625_0000153_94612_95517 274
27 iso_pu_bacteria 2791355196 2793063575 274
28 3300038443 Ga0395901_0136549 Ga0395901_0136549_1359_2249 275
29 3300046460 Ga0495638_0002055 Ga0495638_0002055_4038_4931 275
30 3300046660 Ga0495625_0015658 Ga0495625_0015658_4003_4896 275
31 3300049823 Ga0501044_0044378 Ga0501044_0044378_2690_3595 275
32 iso_pu_bacteria 2775506901 2776258174 275
33 iso_pu_bacteria 2824600985 2824601290 275
34 iso_pu_bacteria 2842698319 2842703139 275
35 3300006844 Ga0075428_100212000 Ga0075428_1002120002 276
36 3300031456 Ga0307513_10046924 Ga0307513_100469242 276
37 3300046460 Ga0495638_0115063 Ga0495638_0115063_678_1574 276
38 3300046616 Ga0495668_0000006 Ga0495668_0000006_379716_380624 276
39 3300047320 Ga0495672_0015002 Ga0495672_0015002_158_1054 276
40 3300005548 Ga0070665_100036705 Ga0070665_1000367051 277
41 3300046460 Ga0495638_0002448 Ga0495638_0002448_23_988 277
42 3300048908 Ga0496105_0108224 Ga0496105_0108224_199_1098 277
43 3300048918 Ga0496115_0258156 Ga0496115_0258156_115_1014 277
44 3300048921 Ga0496118_0046643 Ga0496118_0046643_250_1218 277
45 3300048923 Ga0496120_0015837 Ga0496120_0015837_2164_3120 277
46 3300053092 Ga0500583_0023187 Ga0500583_0023187_606_1559 277
47 3300053103 Ga0500555_018319 Ga0500555_018319_12_965 277
48 3300053104 Ga0500556_0038563 Ga0500556_0038563_40_936 277
49 3300053130 Ga0500642_0097024 Ga0500642_0097024_393_1346 277
50 3300053139 Ga0500568_0023584 Ga0500568_0023584_1469_2422 277
51 3300053142 Ga0500577_0009470 Ga0500577_0009470_838_1737 277
52 3300053151 Ga0500604_0045676 Ga0500604_0045676_340_1293 277
53 3300053158 Ga0500627_0111566 Ga0500627_0111566_219_1172 277
54 3300054114 Ga0501084_0239068 Ga0501084_0239068_73_969 277
55 iso_pu_bacteria 2511231028 2511393392 277
56 iso_pu_bacteria 8006994254 8006995544 277
57 3300032004 Ga0307414_10234437 Ga0307414_102344372 278
58 3300050491 nmdc:mga00v17_11517_c1 nmdc:mga00v17_11517_c1_411_1313 278
59 3300050491 nmdc:mga00v17_56295_c1 nmdc:mga00v17_56295_c1_899_1801 278
60 3300053177 Ga0500636_0065083 Ga0500636_0065083_237_1136 278
61 3300005435 Ga0070714_100128421 Ga0070714_1001284213 279
62 3300006048 Ga0075363_100016365 Ga0075363_1000163652 279
63 3300006051 Ga0075364_10001751 Ga0075364_100017516 279
64 3300006177 Ga0075362_10000572 Ga0075362_100005722 279
65 3300006195 Ga0075366_10017119 Ga0075366_100171193 279
66 3300006353 Ga0075370_10118170 Ga0075370_101181701 279
67 3300025929 Ga0207664_10160852 Ga0207664_101608522 279
68 3300026142 Ga0207698_10156453 Ga0207698_101564532 279
69 3300048928 Ga0496125_0099628 Ga0496125_0099628_1148_2086 279
70 3300048929 Ga0496126_0006198 Ga0496126_0006198_3176_4114 279
71 3300050489 nmdc:mga03683_19058_c1 nmdc:mga03683_19058_c1_774_1676 279
72 3300050491 nmdc:mga00v17_12144_c1 nmdc:mga00v17_12144_c1_3240_4142 279
73 3300050493 nmdc:mga0k408_8282_c1 nmdc:mga0k408_8282_c1_2982_3884 279
74 3300050494 nmdc:mga06z11_71466_c1 nmdc:mga06z11_71466_c1_426_1328 279
75 3300050496 nmdc:mga07m45_116323_c1 nmdc:mga07m45_116323_c1_63_965 279
76 3300050516 nmdc:mga0sz30_11112_c1 nmdc:mga0sz30_11112_c1_120_1022 279
77 iso_pu_bacteria 2508501050 2508729930 279
78 iso_pu_bacteria 2889306138 2889308472 279
79 iso_pu_bacteria 2902330777 2902335134 279
80 3300009148 Ga0105243_10039078 Ga0105243_100390782 280
81 3300014326 Ga0157380_10151739 Ga0157380_101517392 280
82 3300025935 Ga0207709_10112993 Ga0207709_101129932 280
83 3300049568 Ga0501031_0020190 Ga0501031_0020190_834_1757 280
84 3300049574 Ga0501038_0330240 Ga0501038_0330240_133_1056 280
85 3300049579 Ga0501043_0162922 Ga0501043_0162922_361_1284 280
86 3300049822 Ga0501035_0091508 Ga0501035_0091508_287_1210 280
87 iso_pu_bacteria 2842333319 2842339001 280
88 iso_pu_bacteria 2928531327 2928531504 282
89 3300031852 Ga0307410_10103683 Ga0307410_101036832 283
90 3300031901 Ga0307406_10380812 Ga0307406_103808122 283
91 3300031995 Ga0307409_100145600 Ga0307409_1001456001 283
92 3300032002 Ga0307416_100224009 Ga0307416_1002240092 283
93 3300032004 Ga0307414_10164335 Ga0307414_101643352 283
94 3300032126 Ga0307415_100080407 Ga0307415_1000804072 283
95 3300044735 Ga0466968_0004463 Ga0466968_0004463_2382_3302 283
96 3300046460 Ga0495638_0000925 Ga0495638_0000925_8010_8933 283
97 3300046512 Ga0495610_0000097 Ga0495610_0000097_11642_12565 283
98 3300046660 Ga0495625_0004896 Ga0495625_0004896_10057_10980 283
99 3300047320 Ga0495672_0018995 Ga0495672_0018995_3500_4423 283
100 3300053134 Ga0500658_0002599 Ga0500658_0002599_5144_6067 283
101 iso_pu_bacteria 2643221691 2644507312 283
102 iso_pu_bacteria 2894232714 2894240309 283
103 3300014497 Ga0182008_10128099 Ga0182008_101280991 284
104 3300028380 Ga0268265_10208301 Ga0268265_102083012 284
105 3300031456 Ga0307513_10290970 Ga0307513_102909702 284
106 3300031995 Ga0307409_100035483 Ga0307409_1000354833 284
107 3300037853 Ga0436364_0066898 Ga0436364_0066898_208_1125 284
108 3300039437 Ga0436365_0474626 Ga0436365_0474626_783_1757 284
109 3300039450 Ga0436363_0755639 Ga0436363_0755639_1905_2822 284
110 3300039453 Ga0436362_0971458 Ga0436362_0971458_141_1058 284
111 3300041406 Ga0439439_0055135 Ga0439439_0055135_87_1004 284
112 3300042125 Ga0450923_008146 Ga0450923_008146_278_1273 284
113 3300053094 Ga0500566_0000908 Ga0500566_0000908_2556_3599 284
114 iso_pu_bacteria 2643221545 2643750422 284
115 iso_pu_bacteria 643348564 643601353 284
116 3300003322 rootL2_10035732 rootL2_100357323 285
117 3300046507 Ga0495606_0010001 Ga0495606_0010001_4885_5814 285
118 3300048927 Ga0496124_0038763 Ga0496124_0038763_1889_2821 286
119 3300050492 nmdc:mga0yw44_5221_c1 nmdc:mga0yw44_5221_c1_635_1570 286
120 3300046471 Ga0495650_0000017 Ga0495650_0000017_356959_357894 287
121 3300046520 Ga0495637_0001284 Ga0495637_0001284_10961_11896 287
122 3300046524 Ga0495648_0000525 Ga0495648_0000525_26396_27346 287
123 3300046524 Ga0495648_0023352 Ga0495648_0023352_735_1670 287
124 3300046530 Ga0495654_0000012 Ga0495654_0000012_175747_176682 287
125 3300046660 Ga0495625_0058912 Ga0495625_0058912_1472_2407 287
126 3300047469 Ga0495673_0000556 Ga0495673_0000556_26031_26981 287
127 3300048925 Ga0496122_0034297 Ga0496122_0034297_404_1375 287
128 3300048928 Ga0496125_0001277 Ga0496125_0001277_24323_25294 287
129 3300053087 Ga0500643_028583 Ga0500643_028583_466_1416 287
130 3300053088 Ga0500644_0000012 Ga0500644_0000012_72474_73424 287
131 3300053104 Ga0500556_0000240 Ga0500556_0000240_31397_32332 287
132 3300053138 Ga0500564_000050 Ga0500564_000050_25877_26827 287
133 3300053158 Ga0500627_0004175 Ga0500627_0004175_3575_4510 287
134 3300053161 Ga0500634_0119158 Ga0500634_0119158_91_1074 287
135 3300006195 Ga0075366_10038520 Ga0075366_100385202 288
136 3300025299 Ga0209256_1001568 Ga0209256_10015682 288
137 3300048922 Ga0496119_0007269 Ga0496119_0007269_5423_6394 288
138 3300048928 Ga0496125_0000290 Ga0496125_0000290_16275_17246 288
139 3300053087 Ga0500643_000210 Ga0500643_000210_46077_47006 288
140 3300003762 Ga0055542_1000669 Ga0055542_10006696 289
141 3300003763 Ga0055529_1001255 Ga0055529_10012556 289
142 3300010375 Ga0105239_10208039 Ga0105239_102080392 289
143 3300048921 Ga0496118_0115211 Ga0496118_0115211_465_1430 289
144 iso_pu_bacteria 2751185800 2753360823 290
145 iso_pu_bacteria 2758568016 2758638652 290
146 3300025254 Ga0209148_1000411 Ga0209148_100041118 291
147 3300025272 Ga0209455_1000150 Ga0209455_100015098 291
148 iso_pu_bacteria 2599185352 2600196249 292
149 iso_pu_bacteria 2643221557 2643806578 292
150 iso_pu_bacteria 2643221610 2644067047 292
151 iso_pu_bacteria 2643221618 2644108400 292
152 iso_pu_bacteria 2643221626 2644147628 292
153 iso_pu_bacteria 2643221655 2644309452 292
154 iso_pu_bacteria 2643221659 2644331749 292
155 iso_pu_bacteria 2643221668 2644378526 292
156 iso_pu_bacteria 2643221675 2644415604 292
157 iso_pu_bacteria 2643221680 2644450486 292
158 iso_pu_bacteria 2643221698 2644542130 292
159 iso_pu_bacteria 2643221712 2644615955 292
160 iso_pu_bacteria 2643221723 2644673363 292
161 iso_pu_bacteria 2643221726 2644691062 292
162 iso_pu_bacteria 2738543024 2739309922 292
163 iso_pu_bacteria 2844163670 2844166114 292
164 iso_pu_bacteria 2941499720 2941502666 292
165 iso_pu_bacteria 8002285264 8002286486 292
166 3300005547 Ga0070693_100086998 Ga0070693_1000869982 295
167 3300035724 Ga0373933_0243303 Ga0373933_0243303_151_1119 295
168 3300002739 JGI25158J39367_1002557 JGI25158J39367_10025572 296
169 3300002987 JGI25159J45721_1000024 JGI25159J45721_100002451 296
170 3300003187 JGI25151J46595_10009346 JGI25151J46595_100093461 296
171 3300003354 JGI25160J50197_1000063 JGI25160J50197_100006365 296
172 3300003374 JGI25161J50226_1000358 JGI25161J50226_10003582 296
173 3300003771 Ga0055526_1002320 Ga0055526_10023206 296
174 3300003775 Ga0055524_1000541 Ga0055524_10005413 296
175 3300003781 Ga0055536_1017613 Ga0055536_10176132 296
176 3300003791 Ga0055530_10020506 Ga0055530_100205062 296
177 3300003794 Ga0055531_10047033 Ga0055531_100470331 296
178 3300004625 Ga0055543_1000197 Ga0055543_10001977 296
179 3300005262 Ga0065165_1000163 Ga0065165_100016350 296
180 3300025208 Ga0209436_100312 Ga0209436_10031217 296
181 3300025263 Ga0209565_1016263 Ga0209565_10162632 296
182 3300025284 Ga0209130_1000138 Ga0209130_100013846 296
183 3300025292 Ga0209676_1002930 Ga0209676_10029307 296
184 3300025294 Ga0209025_1000602 Ga0209025_100060211 296
185 3300025295 Ga0209564_1000250 Ga0209564_100025055 296
186 3300025299 Ga0209256_1000406 Ga0209256_100040642 296
187 3300025299 Ga0209256_1000623 Ga0209256_100062334 296
188 3300025302 Ga0207426_1000255 Ga0207426_100025546 296
189 3300025303 Ga0209051_1038650 Ga0209051_10386502 296
190 3300025304 Ga0209257_1041636 Ga0209257_10416361 296
191 iso_pu_bacteria 2856320880 2856326846 296
192 iso_pu_bacteria 2869278585 2869283602 296
193 iso_pu_bacteria 2874139085 2874143702 296
194 iso_pu_bacteria 2878738818 2878738967 296
195 iso_pu_bacteria 2888337043 2888338907 296
196 iso_pu_bacteria 2924718760 2924720708 296
197 iso_pu_bacteria 2924776078 2924776329 296
198 iso_pu_bacteria 2937877337 2937884214 296
199 iso_pu_bacteria 2937972304 2937979684 296
200 iso_pu_bacteria 2958034702 2958040114 296
201 iso_pu_bacteria 2958041894 2958054458 296
202 iso_pu_bacteria 2958064165 2958069684 296
203 iso_pu_bacteria 2958084443 2958091525 296
204 iso_pu_bacteria 2958092219 2958094777 296
205 iso_pu_bacteria 2958144490 2958145980 296
206 iso_pu_bacteria 2968016561 2968018955 296
207 iso_pu_bacteria 2970469710 2970470872 296
208 iso_pu_bacteria 2970593180 2970597973 296
209 iso_pu_bacteria 2996348954 2996356593 296
210 iso_pu_bacteria 3004275668 3004282896 296
211 iso_pu_bacteria 3004289098 3004291038 296

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

54

113

0.98

PF03466

LysR_substrate

LysR substrate binding domain

137

349

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5yez-assembly2.cif.gz_C regulatory domain of hypt m206q mutant from salmonella typhimurium 0.8988 72 278
5yez-assembly2.cif.gz_C regulatory domain of hypt m206q mutant from salmonella typhimurium 0.8839 72 278
5ydo-assembly1.cif.gz_A regulatory domain of hypt from salmonella typhimurium (apo-form) 0.8535 66 281
5yez-assembly1.cif.gz_A regulatory domain of hypt m206q mutant from salmonella typhimurium 0.8503 71 281
5yez-assembly1.cif.gz_B regulatory domain of hypt m206q mutant from salmonella typhimurium 0.8433 71 282
ID Description Score Start End Superfamily
1iz1P01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9412 16 66 1.10.10.10
af_P39376_183_267_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9248 160 240 3.40.190.10
af_P67660_2_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8646 16 62 1.10.10.10
af_P76369_5_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8407 14 64 1.10.10.10
af_P10151_15_101_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8387 18 54 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A257JHK1-F1-model_v4 LysR substrate-binding domain-containing protein 0.8923 99 277 GO:0000976
GO:0006355
AF-A0A062SAU9-F1-model_v4 deleted 0.8515 79 282
AF-A0A257JHK1-F1-model_v4 LysR substrate-binding domain-containing protein 0.8233 99 277 GO:0000976
GO:0006355
AF-A0A062SAU9-F1-model_v4 deleted 0.8199 79 282
AF-A0A2T5GVR7-F1-model_v4 LysR family transcriptional regulator 0.8094 51 295

Feature Viewer

pLDDT pTM Quality
81.16 0.73 High
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Predicted Structure (AlphaFold2)

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