F326563
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 215 | 170 | 178 | 506 |
Family's Representative Sequence
| Representative Sequence | 3300028800|Ga0265338_10025749|Ga0265338_100257497 |
| Length | 510 |
| Sequence | MTKFNKPAKNTAVTTNYEGEKAFKLTPELELYTAVVTSTLSNKYYETSDGRVERIRALIAASDPEFVAKLAVYAREKMYMRTMPLVVTAELAHVHNNDNLVSRLTGRVVQRVDEITELLAYYLLLNKRSAGVKKLNKLSNQIRKGLAASFNKFSEYQFAKYDRAGEIKLRDALFLAHPVAKNAEQQELFDKIVESNLKVPYTWEVQLSEVGQKKYETEELKKVAFKKKWEELIDSGKMGYMATMRNLRNILEAGVDVKHLKKVCEFLSDKEEVSTSKQFPFRFLSAYREIKDVATGKAPMVLDALEEAMQASAENIKGFGYNTSVVIACDTSGSMQTTISERSKIQNYDIGLVLGMLLQSKCKDVATGIFGDTWKIINLPKQSILANADELHRREGEVGYSTNGYLVLEDLLNRNYQADKIMIFTDCQLWNSNGGYYRGGDMSALWTKYKAKFPESKLYLFDLSGYGNTPLQVERNGVHLIAGWSDKVFDILEALENSKSALSEIEAIKL |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 2 | 2511231000 | Chryseobacterium populi CF314 | Isolate | Rhizosphere |
| 3 | 2582581278 | Chryseobacterium sp. CF365 | Isolate | Rhizosphere |
| 4 | 2582581281 | Chryseobacterium sp. CF284 | Isolate | Rhizosphere |
| 5 | 2582581282 | Chryseobacterium sp. CF299 | Isolate | Rhizosphere |
| 6 | 2585428045 | Chryseobacterium sp. OV705 | Isolate | Rhizosphere |
| 7 | 2585428060 | Chryseobacterium sp. OV715 | Isolate | Rhizosphere |
| 8 | 2585428115 | Chryseobacterium sp. YR561 | Isolate | Rhizosphere |
| 9 | 2585428182 | Chryseobacterium sp. YR477 | Isolate | Rhizosphere |
| 10 | 2585428183 | Chryseobacterium sp. YR485 | Isolate | Rhizosphere |
| 11 | 2585428185 | Chryseobacterium sp. YR459 | Isolate | Rhizosphere |
| 12 | 2585428187 | Chryseobacterium sp. YR460 | Isolate | Rhizosphere |
| 13 | 2588253712 | Chryseobacterium sp. OV279 | Isolate | Rhizosphere |
| 14 | 2588254255 | Chryseobacterium sp. YR221 | Isolate | Rhizosphere |
| 15 | 2588254257 | Chryseobacterium sp. YR203 | Isolate | Rhizosphere |
| 16 | 2643221600 | Flavobacterium sp. Root186 | Isolate | Unclassified |
| 17 | 2728369107 | Chryseobacterium kwangjuense KJ1R5 | Isolate | Unclassified |
| 18 | 2738541279 | Flavobacterium sp. GV069 | Isolate | Unclassified |
| 19 | 2738541285 | Flavobacterium sp. GV030 | Isolate | Unclassified |
| 20 | 2738543007 | Flavobacterium sp. GV063 | Isolate | Unclassified |
| 21 | 2751185877 | Chryseobacterium artocarpi UTM-3 | Isolate | Rhizosphere |
| 22 | 2765235839 | Chryseobacterium indologenes AA5 | Isolate | Unclassified |
| 23 | 2772190705 | Chryseobacterium contaminans C-26 | Isolate | Rhizosphere |
| 24 | 2816332188 | Chryseobacterium aquifrigidense 110 (version 2) | Isolate | Unclassified |
| 25 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 26 | 2818991460 | Chitinophaga polysaccharea 1209 | Isolate | Unclassified |
| 27 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 28 | 2871720351 | Chryseobacterium sp. KLBC 52 | Isolate | Nodule |
| 29 | 2884791551 | Chitinophaga oryzae 1310 | Isolate | Unclassified |
| 30 | 2889290771 | Chryseobacterium sp. PvR013 | Isolate | Rhizosphere |
| 31 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 32 | 2904555929 | Flavobacterium sp. 1750 | Isolate | Rhizosphere |
| 33 | 2905999023 | Chryseobacterium elymi KCTC 22547 | Isolate | Rhizosphere |
| 34 | 2919191525 | Flavobacterium sp. 2755 | Isolate | Rhizosphere |
| 35 | 2919399522 | Chryseobacterium sp. 2987 | Isolate | Unclassified |
| 36 | 2946019816 | Chryseobacterium sp. W4I1 | Isolate | Rhizosphere |
| 37 | 2977243572 | Chryseobacterium sp. SORGH_AS 447 | Isolate | Unclassified |
| 38 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 39 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 40 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 41 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 42 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 43 | 3300003781 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 | Metagenome | Endosphere |
| 44 | 3300003784 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 | Metagenome | Endosphere |
| 45 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 46 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 47 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 48 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 49 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 50 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 51 | 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 52 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 53 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 54 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 55 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 56 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 57 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 58 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 59 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 60 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 61 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 62 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 63 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 64 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 65 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 66 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 67 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 68 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 69 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 70 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 71 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 72 | 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Metagenome | Rhizosphere |
| 73 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 74 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 76 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 77 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 79 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 80 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 81 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 82 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 83 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 84 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 85 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 86 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 87 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 88 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 89 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 90 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 91 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 92 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 93 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 94 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 95 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 96 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 97 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 98 | 3300025291 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 99 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 100 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 101 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 102 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 103 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 104 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 105 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 106 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 107 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 108 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 109 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 110 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 111 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 112 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 113 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 114 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 115 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 116 | 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 117 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 118 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 119 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 120 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 121 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 122 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 123 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 124 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 125 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 126 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 127 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 128 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 129 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 130 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 131 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 132 | 3300042014 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 | Metagenome | Rhizosphere |
| 133 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 134 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 135 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 136 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 137 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 138 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 139 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 140 | 3300046457 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere | Metagenome | Rhizosphere |
| 141 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 142 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 143 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 144 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 145 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 146 | 3300046525 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere | Metagenome | Rhizosphere |
| 147 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 148 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 149 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 150 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 151 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 152 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 153 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 154 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 155 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 156 | 3300048923 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 | Metagenome | Unclassified |
| 157 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 158 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 159 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 160 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 161 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 162 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 163 | 3300049758 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought | Metagenome | Rhizosphere |
| 164 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 165 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 166 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 167 | 3300053096 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere | Metagenome | Endosphere |
| 168 | 3300053151 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere | Metagenome | Endosphere |
| 169 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 170 | 8054307821 | Flavobacterium soyae SCIV07 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 82.79 |
| Metatranscriptomes | 0 |
| Isolates | 17.21 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 14.42 |
| Nodule | 0.47 |
| Rhizoplane | 0.47 |
| Rhizosphere | 65.58 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 19.07 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | SwRhRL2b_contig_2170304 | 2162886007 | Bacteria | 3285 |
| 2 | rootH1_10034404 | 3300003316 | Bacteria | 11031 |
| 3 | rootH2_10054673 | 3300003320 | Bacteria | 21909 |
| 4 | rootL2_10019704 | 3300003322 | Unclassified | 2432 |
| 5 | rootL2_10057731 | 3300003322 | Bacteria | 3341 |
| 6 | rootL2_10065502 | 3300003322 | Bacteria | 4564 |
| 7 | rootL2_10087599 | 3300003322 | Unclassified | 4120 |
| 8 | rootL2_10302666 | 3300003322 | Bacteria | 1725 |
| 9 | rootH1_10000899 | 3300003323 | Bacteria | 33089 |
| 10 | rootH1_10077441 | 3300003323 | Bacteria | 3117 |
| 11 | rootH1_10279828 | 3300003323 | Unclassified | 2769 |
| 12 | Ga0055526_1000793 | 3300003771 | Bacteria | 23558 |
| 13 | Ga0055526_1008042 | 3300003771 | Bacteria | 5331 |
| 14 | Ga0055536_1000010 | 3300003781 | Bacteria | 304614 |
| 15 | Ga0055534_1006194 | 3300003784 | Bacteria | 3057 |
| 16 | Ga0055528_1000232 | 3300003790 | Bacteria | 46543 |
| 17 | Ga0055530_10004108 | 3300003791 | Bacteria | 7734 |
| 18 | Ga0055530_10008435 | 3300003791 | Bacteria | 4127 |
| 19 | Ga0055531_10000026 | 3300003794 | Bacteria | 160364 |
| 20 | Ga0065165_1000010 | 3300005262 | Bacteria | 323737 |
| 21 | Ga0065714_10066032 | 3300005288 | Bacteria | 7790 |
| 22 | Ga0065704_10082289 | 3300005289 | Bacteria | 3624 |
| 23 | Ga0065715_10112319 | 3300005293 | Bacteria | 2535 |
| 24 | Ga0070658_10012489 | 3300005327 | Bacteria | 6816 |
| 25 | Ga0070676_10001892 | 3300005328 | Bacteria | 10639 |
| 26 | Ga0070666_10010725 | 3300005335 | Bacteria | 5734 |
| 27 | Ga0070682_100000544 | 3300005337 | Bacteria | 23390 |
| 28 | Ga0068868_100005073 | 3300005338 | Bacteria | 9247 |
| 29 | Ga0070668_100001200 | 3300005347 | Bacteria | 18391 |
| 30 | Ga0070673_100000271 | 3300005364 | Bacteria | 26588 |
| 31 | Ga0070667_100010946 | 3300005367 | Bacteria | 7502 |
| 32 | Ga0070662_100001316 | 3300005457 | Bacteria | 15273 |
| 33 | Ga0068867_100159250 | 3300005459 | Bacteria | 1779 |
| 34 | Ga0068853_100140966 | 3300005539 | Bacteria | 2164 |
| 35 | Ga0070672_100000102 | 3300005543 | Bacteria | 42541 |
| 36 | Ga0070665_100030914 | 3300005548 | Bacteria | 5389 |
| 37 | Ga0070664_100071080 | 3300005564 | Bacteria | 2982 |
| 38 | Ga0068856_100007732 | 3300005614 | Bacteria | 10497 |
| 39 | Ga0068856_100026081 | 3300005614 | Bacteria | 5698 |
| 40 | Ga0068859_100001032 | 3300005617 | Bacteria | 28525 |
| 41 | Ga0068864_100081214 | 3300005618 | Bacteria | 2842 |
| 42 | Ga0068864_100149673 | 3300005618 | Unclassified | 2113 |
| 43 | Ga0068863_100013937 | 3300005841 | Bacteria | 7749 |
| 44 | Ga0068858_100004689 | 3300005842 | Bacteria | 13396 |
| 45 | Ga0068860_100023685 | 3300005843 | Bacteria | 5935 |
| 46 | Ga0070716_100023719 | 3300006173 | Bacteria | 3257 |
| 47 | Ga0075366_10007716 | 3300006195 | Bacteria | 5960 |
| 48 | Ga0097620_100001032 | 3300006931 | Bacteria | 28525 |
| 49 | Ga0105244_10000002 | 3300009036 | Bacteria | 495554 |
| 50 | Ga0105244_10000018 | 3300009036 | Bacteria | 244992 |
| 51 | Ga0105240_10238922 | 3300009093 | Bacteria | 2107 |
| 52 | Ga0105240_10283759 | 3300009093 | Bacteria | 1901 |
| 53 | Ga0114129_10014572 | 3300009147 | Bacteria | 11202 |
| 54 | Ga0105243_10000011 | 3300009148 | Bacteria | 312350 |
| 55 | Ga0105237_10021013 | 3300009545 | Bacteria | 6718 |
| 56 | Ga0105237_10225954 | 3300009545 | Unclassified | 1872 |
| 57 | Ga0105239_10099253 | 3300010375 | Bacteria | 3219 |
| 58 | Ga0105239_10184001 | 3300010375 | Bacteria | 2338 |
| 59 | Ga0105239_10198585 | 3300010375 | Unclassified | 2247 |
| 60 | Ga0157373_10000056 | 3300013100 | Bacteria | 100327 |
| 61 | Ga0157371_10082513 | 3300013102 | Unclassified | 2276 |
| 62 | Ga0157370_10002929 | 3300013104 | Bacteria | 20317 |
| 63 | Ga0157370_10125387 | 3300013104 | Bacteria | 2397 |
| 64 | Ga0157370_10127992 | 3300013104 | Bacteria | 2370 |
| 65 | Ga0157369_10193309 | 3300013105 | Bacteria | 2137 |
| 66 | Ga0157374_10018414 | 3300013296 | Bacteria | 6163 |
| 67 | Ga0157378_10050936 | 3300013297 | Bacteria | 3684 |
| 68 | Ga0163162_10043706 | 3300013306 | Bacteria | 4486 |
| 69 | Ga0157372_10028188 | 3300013307 | Bacteria | 6128 |
| 70 | Ga0157375_10083157 | 3300013308 | Bacteria | 3245 |
| 71 | Ga0163163_10000493 | 3300014325 | Bacteria | 35594 |
| 72 | Ga0157380_10082249 | 3300014326 | Bacteria | 2635 |
| 73 | Ga0157379_10000255 | 3300014968 | Bacteria | 41772 |
| 74 | Ga0157376_10003160 | 3300014969 | Bacteria | 11316 |
| 75 | Ga0157376_10018450 | 3300014969 | Bacteria | 5349 |
| 76 | Ga0182006_1000137 | 3300015261 | Bacteria | 78702 |
| 77 | Ga0182005_1000123 | 3300015265 | Bacteria | 55080 |
| 78 | Ga0163161_10000016 | 3300017792 | Bacteria | 235591 |
| 79 | Ga0163161_10001225 | 3300017792 | Bacteria | 19242 |
| 80 | Ga0163161_10052731 | 3300017792 | Bacteria | 2949 |
| 81 | Ga0209673_1000082 | 3300025273 | Bacteria | 219716 |
| 82 | Ga0209675_1000051 | 3300025291 | Bacteria | 206342 |
| 83 | Ga0209676_1000009 | 3300025292 | Bacteria | 981719 |
| 84 | Ga0209564_1000938 | 3300025295 | Bacteria | 37831 |
| 85 | Ga0209564_1001267 | 3300025295 | Bacteria | 27798 |
| 86 | Ga0209758_1001697 | 3300025297 | Bacteria | 24785 |
| 87 | Ga0209758_1002433 | 3300025297 | Bacteria | 19000 |
| 88 | Ga0209050_1000103 | 3300025298 | Bacteria | 229225 |
| 89 | Ga0209050_1001145 | 3300025298 | Bacteria | 31811 |
| 90 | Ga0207426_1000763 | 3300025302 | Bacteria | 35780 |
| 91 | Ga0207426_1004305 | 3300025302 | Bacteria | 7024 |
| 92 | Ga0207426_1011231 | 3300025302 | Bacteria | 3426 |
| 93 | Ga0209257_1000004 | 3300025304 | Bacteria | 1678347 |
| 94 | Ga0209257_1004103 | 3300025304 | Bacteria | 11643 |
| 95 | Ga0207655_1000012 | 3300025728 | Bacteria | 640488 |
| 96 | Ga0207655_1000058 | 3300025728 | Bacteria | 267656 |
| 97 | Ga0207680_10019138 | 3300025903 | Bacteria | 3657 |
| 98 | Ga0207645_10002523 | 3300025907 | Bacteria | 14333 |
| 99 | Ga0207695_10138440 | 3300025913 | Bacteria | 2386 |
| 100 | Ga0207671_10000257 | 3300025914 | Bacteria | 79555 |
| 101 | Ga0207671_10008405 | 3300025914 | Bacteria | 8762 |
| 102 | Ga0207709_10000034 | 3300025935 | Bacteria | 313184 |
| 103 | Ga0207709_10000463 | 3300025935 | Bacteria | 37320 |
| 104 | Ga0207691_10000145 | 3300025940 | Bacteria | 65242 |
| 105 | Ga0207661_10028707 | 3300025944 | Bacteria | 4264 |
| 106 | Ga0207651_10002482 | 3300025960 | Bacteria | 8798 |
| 107 | Ga0207668_10000328 | 3300025972 | Bacteria | 30719 |
| 108 | Ga0207658_10000431 | 3300025986 | Bacteria | 39615 |
| 109 | Ga0207677_10010213 | 3300026023 | Bacteria | 5306 |
| 110 | Ga0207703_10008566 | 3300026035 | Bacteria | 8072 |
| 111 | Ga0207702_10246541 | 3300026078 | Bacteria | 1676 |
| 112 | Ga0207641_10016425 | 3300026088 | Bacteria | 6061 |
| 113 | Ga0207648_10105030 | 3300026089 | Bacteria | 2478 |
| 114 | Ga0207676_10063744 | 3300026095 | Bacteria | 2928 |
| 115 | Ga0207676_10129897 | 3300026095 | Unclassified | 2140 |
| 116 | Ga0268266_10024279 | 3300028379 | Bacteria | 5158 |
| 117 | Ga0265338_10025749 | 3300028800 | Bacteria | 5960 |
| 118 | Ga0265327_10000207 | 3300031251 | Bacteria | 123193 |
| 119 | Ga0265327_10001248 | 3300031251 | Bacteria | 33913 |
| 120 | Ga0307407_10000006 | 3300031903 | Bacteria | 218714 |
| 121 | Ga0307412_10000074 | 3300031911 | Bacteria | 99093 |
| 122 | Ga0307409_100058493 | 3300031995 | Bacteria | 2994 |
| 123 | Ga0307416_100000020 | 3300032002 | Bacteria | 192862 |
| 124 | Ga0307416_100000032 | 3300032002 | Bacteria | 156777 |
| 125 | Ga0307414_10005564 | 3300032004 | Bacteria | 6949 |
| 126 | Ga0395905_0000055 | 3300037471 | Bacteria | 209727 |
| 127 | Ga0395901_0051883 | 3300038443 | Bacteria | 4264 |
| 128 | Ga0439457_001464 | 3300042014 | Bacteria | 7085 |
| 129 | Ga0466969_0000398 | 3300044656 | Bacteria | 23847 |
| 130 | Ga0466972_0000012 | 3300044658 | Bacteria | 246338 |
| 131 | Ga0466966_0000047 | 3300044684 | Bacteria | 91962 |
| 132 | Ga0453684_0010129 | 3300044712 | Bacteria | 16192 |
| 133 | Ga0466959_0000035 | 3300045049 | Bacteria | 108669 |
| 134 | Ga0451576_0000003 | 3300045051 | Bacteria | 1550573 |
| 135 | Ga0495627_000029 | 3300046453 | Bacteria | 232349 |
| 136 | Ga0495590_0003616 | 3300046457 | Bacteria | 6296 |
| 137 | Ga0495638_0000054 | 3300046460 | Bacteria | 196524 |
| 138 | Ga0495607_0064326 | 3300046501 | Bacteria | 2072 |
| 139 | Ga0495606_0066448 | 3300046507 | Bacteria | 2287 |
| 140 | Ga0495632_0004008 | 3300046519 | Bacteria | 10185 |
| 141 | Ga0495643_0001491 | 3300046522 | Bacteria | 21273 |
| 142 | Ga0495663_0000044 | 3300046525 | Bacteria | 62856 |
| 143 | Ga0495633_0000039 | 3300046558 | Bacteria | 180652 |
| 144 | Ga0495633_0000559 | 3300046558 | Bacteria | 36515 |
| 145 | Ga0495668_0001600 | 3300046616 | Bacteria | 21224 |
| 146 | Ga0495625_0000885 | 3300046660 | Bacteria | 40581 |
| 147 | Ga0495625_0021871 | 3300046660 | Bacteria | 4912 |
| 148 | Ga0495686_0000408 | 3300047472 | Bacteria | 67911 |
| 149 | Ga0495686_0008285 | 3300047472 | Bacteria | 7649 |
| 150 | Ga0495686_0042915 | 3300047472 | Bacteria | 2871 |
| 151 | Ga0496103_0085689 | 3300048906 | Bacteria | 1985 |
| 152 | Ga0496116_0000037 | 3300048919 | Bacteria | 374675 |
| 153 | Ga0496117_0000086 | 3300048920 | Bacteria | 212331 |
| 154 | Ga0496118_0000333 | 3300048921 | Bacteria | 80356 |
| 155 | Ga0496119_0000037 | 3300048922 | Bacteria | 210912 |
| 156 | Ga0496120_0046370 | 3300048923 | Bacteria | 2512 |
| 157 | Ga0496122_0000231 | 3300048925 | Bacteria | 125511 |
| 158 | Ga0496122_0000510 | 3300048925 | Bacteria | 80239 |
| 159 | Ga0496122_0005891 | 3300048925 | Bacteria | 14351 |
| 160 | Ga0496122_0016532 | 3300048925 | Bacteria | 6971 |
| 161 | Ga0496123_0004737 | 3300048926 | Bacteria | 14081 |
| 162 | Ga0496123_0014019 | 3300048926 | Bacteria | 6672 |
| 163 | Ga0496124_0001449 | 3300048927 | Bacteria | 35038 |
| 164 | Ga0496124_0055117 | 3300048927 | Bacteria | 3362 |
| 165 | Ga0496125_0002543 | 3300048928 | Bacteria | 23522 |
| 166 | Ga0496125_0009711 | 3300048928 | Bacteria | 9825 |
| 167 | Ga0496126_0000726 | 3300048929 | Bacteria | 59824 |
| 168 | Ga0496126_0005129 | 3300048929 | Bacteria | 15170 |
| 169 | Ga0501047_0030692 | 3300049581 | Bacteria | 5180 |
| 170 | Ga0501241_006038 | 3300049758 | Bacteria | 2242 |
| 171 | nmdc:mga0k408_95467_c1 | 3300050493 | Bacteria | 1750 |
| 172 | nmdc:mga05p37_12431_c1 | 3300050507 | Bacteria | 10168 |
| 173 | Ga0500651_0028291 | 3300053093 | Bacteria | 3525 |
| 174 | Ga0500641_0001327 | 3300053096 | Bacteria | 8787 |
| 175 | Ga0500604_0000457 | 3300053151 | Bacteria | 11282 |
| 176 | Ga0500622_0000024 | 3300053156 | Bacteria | 249623 |
| 177 | Ga0500622_0000512 | 3300053156 | Bacteria | 36041 |
| 178 | Ga0500622_0002588 | 3300053156 | Bacteria | 12891 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300048923 | Ga0496120_0046370 | Ga0496120_0046370_10_1458 | 482 |
| 2 | 3300003322 | rootL2_10019704 | rootL2_100197042 | 492 |
| 3 | 3300005327 | Ga0070658_10012489 | Ga0070658_100124892 | 497 |
| 4 | 3300005328 | Ga0070676_10001892 | Ga0070676_100018927 | 497 |
| 5 | 3300005335 | Ga0070666_10010725 | Ga0070666_100107252 | 497 |
| 6 | 3300005338 | Ga0068868_100005073 | Ga0068868_1000050738 | 497 |
| 7 | 3300005347 | Ga0070668_100001200 | Ga0070668_1000012006 | 497 |
| 8 | 3300005364 | Ga0070673_100000271 | Ga0070673_10000027119 | 497 |
| 9 | 3300005367 | Ga0070667_100010946 | Ga0070667_1000109464 | 497 |
| 10 | 3300005457 | Ga0070662_100001316 | Ga0070662_1000013167 | 497 |
| 11 | 3300005543 | Ga0070672_100000102 | Ga0070672_1000001027 | 497 |
| 12 | 3300005548 | Ga0070665_100030914 | Ga0070665_1000309142 | 497 |
| 13 | 3300005618 | Ga0068864_100081214 | Ga0068864_1000812144 | 497 |
| 14 | 3300005841 | Ga0068863_100013937 | Ga0068863_1000139373 | 497 |
| 15 | 3300005842 | Ga0068858_100004689 | Ga0068858_1000046895 | 497 |
| 16 | 3300005843 | Ga0068860_100023685 | Ga0068860_1000236855 | 497 |
| 17 | 3300013306 | Ga0163162_10043706 | Ga0163162_100437064 | 497 |
| 18 | 3300025903 | Ga0207680_10019138 | Ga0207680_100191382 | 497 |
| 19 | 3300025907 | Ga0207645_10002523 | Ga0207645_1000252310 | 497 |
| 20 | 3300025940 | Ga0207691_10000145 | Ga0207691_100001458 | 497 |
| 21 | 3300025960 | Ga0207651_10002482 | Ga0207651_100024824 | 497 |
| 22 | 3300025972 | Ga0207668_10000328 | Ga0207668_1000032818 | 497 |
| 23 | 3300025986 | Ga0207658_10000431 | Ga0207658_1000043132 | 497 |
| 24 | 3300026023 | Ga0207677_10010213 | Ga0207677_100102134 | 497 |
| 25 | 3300026035 | Ga0207703_10008566 | Ga0207703_100085663 | 497 |
| 26 | 3300026088 | Ga0207641_10016425 | Ga0207641_100164255 | 497 |
| 27 | 3300026089 | Ga0207648_10105030 | Ga0207648_101050301 | 497 |
| 28 | 3300026095 | Ga0207676_10063744 | Ga0207676_100637442 | 497 |
| 29 | 3300028379 | Ga0268266_10024279 | Ga0268266_100242796 | 497 |
| 30 | 3300049758 | Ga0501241_006038 | Ga0501241_006038_23_1537 | 500 |
| 31 | iso_pu_bacteria | 2588254255 | 2590603522 | 500 |
| 32 | iso_pu_bacteria | 2511231000 | 2511234042 | 501 |
| 33 | iso_pu_bacteria | 2582581278 | 2585142515 | 501 |
| 34 | iso_pu_bacteria | 2582581281 | 2585157050 | 501 |
| 35 | iso_pu_bacteria | 2582581282 | 2585161569 | 501 |
| 36 | iso_pu_bacteria | 2585428045 | 2587679073 | 501 |
| 37 | iso_pu_bacteria | 2585428060 | 2587748982 | 501 |
| 38 | iso_pu_bacteria | 2585428115 | 2587942409 | 501 |
| 39 | iso_pu_bacteria | 2585428182 | 2588211699 | 501 |
| 40 | iso_pu_bacteria | 2585428183 | 2588216647 | 501 |
| 41 | iso_pu_bacteria | 2585428185 | 2588226004 | 501 |
| 42 | iso_pu_bacteria | 2585428187 | 2588231123 | 501 |
| 43 | iso_pu_bacteria | 2588253712 | 2588447916 | 501 |
| 44 | iso_pu_bacteria | 2588254257 | 2590610580 | 501 |
| 45 | iso_pu_bacteria | 2728369107 | 2729202400 | 501 |
| 46 | iso_pu_bacteria | 2738541279 | 2738733409 | 501 |
| 47 | iso_pu_bacteria | 2738541285 | 2738765947 | 501 |
| 48 | iso_pu_bacteria | 2738543007 | 2739214990 | 501 |
| 49 | iso_pu_bacteria | 2751185877 | 2753674892 | 501 |
| 50 | iso_pu_bacteria | 2765235839 | 2765576062 | 501 |
| 51 | iso_pu_bacteria | 2772190705 | 2772606425 | 501 |
| 52 | iso_pu_bacteria | 2816332188 | 2816875744 | 501 |
| 53 | iso_pu_bacteria | 2821136567 | 2821136883 | 501 |
| 54 | iso_pu_bacteria | 2871720351 | 2871724680 | 501 |
| 55 | iso_pu_bacteria | 2884791551 | 2884797846 | 501 |
| 56 | iso_pu_bacteria | 2889290771 | 2889293440 | 501 |
| 57 | iso_pu_bacteria | 2904467357 | 2904468372 | 501 |
| 58 | iso_pu_bacteria | 2904555929 | 2904558940 | 501 |
| 59 | iso_pu_bacteria | 2905999023 | 2906002457 | 501 |
| 60 | iso_pu_bacteria | 2919191525 | 2919191929 | 501 |
| 61 | iso_pu_bacteria | 2919399522 | 2919401462 | 501 |
| 62 | iso_pu_bacteria | 2946019816 | 2946019978 | 501 |
| 63 | iso_pu_bacteria | 8054307821 | 8054310694 | 501 |
| 64 | 3300045051 | Ga0451576_0000003 | Ga0451576_0000003_607235_608755 | 502 |
| 65 | iso_pu_bacteria | 2643221600 | 2644009981 | 502 |
| 66 | 3300006195 | Ga0075366_10007716 | Ga0075366_1000771610 | 503 |
| 67 | 3300014326 | Ga0157380_10082249 | Ga0157380_100822492 | 503 |
| 68 | 3300037471 | Ga0395905_0000055 | Ga0395905_0000055_145118_146629 | 503 |
| 69 | 3300044712 | Ga0453684_0010129 | Ga0453684_0010129_14611_16137 | 503 |
| 70 | 3300047472 | Ga0495686_0008285 | Ga0495686_0008285_5645_7159 | 503 |
| 71 | 3300049581 | Ga0501047_0030692 | Ga0501047_0030692_632_2158 | 503 |
| 72 | 3300050493 | nmdc:mga0k408_95467_c1 | nmdc:mga0k408_95467_c1_163_1680 | 503 |
| 73 | 3300053151 | Ga0500604_0000457 | Ga0500604_0000457_3541_5064 | 503 |
| 74 | 3300053156 | Ga0500622_0000024 | Ga0500622_0000024_225576_227099 | 503 |
| 75 | 3300003316 | rootH1_10034404 | rootH1_1003440411 | 504 |
| 76 | 3300003320 | rootH2_10054673 | rootH2_1005467315 | 504 |
| 77 | 3300003322 | rootL2_10057731 | rootL2_100577315 | 504 |
| 78 | 3300003322 | rootL2_10087599 | rootL2_100875994 | 504 |
| 79 | 3300003322 | rootL2_10302666 | rootL2_103026661 | 504 |
| 80 | 3300003323 | rootH1_10077441 | rootH1_100774412 | 504 |
| 81 | 3300003771 | Ga0055526_1000793 | Ga0055526_100079312 | 504 |
| 82 | 3300003771 | Ga0055526_1008042 | Ga0055526_10080424 | 504 |
| 83 | 3300003790 | Ga0055528_1000232 | Ga0055528_100023210 | 504 |
| 84 | 3300003791 | Ga0055530_10008435 | Ga0055530_100084353 | 504 |
| 85 | 3300003794 | Ga0055531_10000026 | Ga0055531_1000002674 | 504 |
| 86 | 3300005262 | Ga0065165_1000010 | Ga0065165_100001068 | 504 |
| 87 | 3300005459 | Ga0068867_100159250 | Ga0068867_1001592502 | 504 |
| 88 | 3300005564 | Ga0070664_100071080 | Ga0070664_1000710801 | 504 |
| 89 | 3300005618 | Ga0068864_100149673 | Ga0068864_1001496733 | 504 |
| 90 | 3300009093 | Ga0105240_10283759 | Ga0105240_102837591 | 504 |
| 91 | 3300009545 | Ga0105237_10021013 | Ga0105237_100210134 | 504 |
| 92 | 3300010375 | Ga0105239_10099253 | Ga0105239_100992533 | 504 |
| 93 | 3300010375 | Ga0105239_10184001 | Ga0105239_101840012 | 504 |
| 94 | 3300010375 | Ga0105239_10198585 | Ga0105239_101985851 | 504 |
| 95 | 3300013102 | Ga0157371_10082513 | Ga0157371_100825131 | 504 |
| 96 | 3300025273 | Ga0209673_1000082 | Ga0209673_100008248 | 504 |
| 97 | 3300025295 | Ga0209564_1000938 | Ga0209564_10009383 | 504 |
| 98 | 3300025295 | Ga0209564_1001267 | Ga0209564_100126718 | 504 |
| 99 | 3300025297 | Ga0209758_1001697 | Ga0209758_100169712 | 504 |
| 100 | 3300025297 | Ga0209758_1002433 | Ga0209758_10024331 | 504 |
| 101 | 3300025298 | Ga0209050_1001145 | Ga0209050_100114521 | 504 |
| 102 | 3300025302 | Ga0207426_1000763 | Ga0207426_100076311 | 504 |
| 103 | 3300025302 | Ga0207426_1004305 | Ga0207426_10043053 | 504 |
| 104 | 3300025304 | Ga0209257_1000004 | Ga0209257_1000004931 | 504 |
| 105 | 3300025304 | Ga0209257_1004103 | Ga0209257_10041032 | 504 |
| 106 | 3300025914 | Ga0207671_10008405 | Ga0207671_100084055 | 504 |
| 107 | 3300025944 | Ga0207661_10028707 | Ga0207661_100287072 | 504 |
| 108 | 3300026095 | Ga0207676_10129897 | Ga0207676_101298972 | 504 |
| 109 | 3300031251 | Ga0265327_10000207 | Ga0265327_1000020768 | 504 |
| 110 | 3300031251 | Ga0265327_10001248 | Ga0265327_1000124817 | 504 |
| 111 | 3300042014 | Ga0439457_001464 | Ga0439457_001464_490_2019 | 504 |
| 112 | 3300044658 | Ga0466972_0000012 | Ga0466972_0000012_76345_77874 | 504 |
| 113 | 3300046616 | Ga0495668_0001600 | Ga0495668_0001600_15084_16601 | 504 |
| 114 | iso_pu_bacteria | 2818991460 | 2819682125 | 504 |
| 115 | 3300003322 | rootL2_10065502 | rootL2_100655021 | 505 |
| 116 | 3300003323 | rootH1_10000899 | rootH1_100008994 | 505 |
| 117 | 3300003323 | rootH1_10279828 | rootH1_102798282 | 505 |
| 118 | 3300003781 | Ga0055536_1000010 | Ga0055536_1000010141 | 505 |
| 119 | 3300003784 | Ga0055534_1006194 | Ga0055534_10061941 | 505 |
| 120 | 3300003791 | Ga0055530_10004108 | Ga0055530_100041088 | 505 |
| 121 | 3300005288 | Ga0065714_10066032 | Ga0065714_100660327 | 505 |
| 122 | 3300005289 | Ga0065704_10082289 | Ga0065704_100822895 | 505 |
| 123 | 3300005293 | Ga0065715_10112319 | Ga0065715_101123191 | 505 |
| 124 | 3300005337 | Ga0070682_100000544 | Ga0070682_10000054433 | 505 |
| 125 | 3300005539 | Ga0068853_100140966 | Ga0068853_1001409662 | 505 |
| 126 | 3300005614 | Ga0068856_100007732 | Ga0068856_10000773211 | 505 |
| 127 | 3300005614 | Ga0068856_100026081 | Ga0068856_1000260812 | 505 |
| 128 | 3300005617 | Ga0068859_100001032 | Ga0068859_10000103224 | 505 |
| 129 | 3300006173 | Ga0070716_100023719 | Ga0070716_1000237193 | 505 |
| 130 | 3300006931 | Ga0097620_100001032 | Ga0097620_10000103224 | 505 |
| 131 | 3300009036 | Ga0105244_10000002 | Ga0105244_10000002238 | 505 |
| 132 | 3300009093 | Ga0105240_10238922 | Ga0105240_102389221 | 505 |
| 133 | 3300009147 | Ga0114129_10014572 | Ga0114129_1001457222 | 505 |
| 134 | 3300009545 | Ga0105237_10225954 | Ga0105237_102259541 | 505 |
| 135 | 3300013105 | Ga0157369_10193309 | Ga0157369_101933091 | 505 |
| 136 | 3300013296 | Ga0157374_10018414 | Ga0157374_100184142 | 505 |
| 137 | 3300013297 | Ga0157378_10050936 | Ga0157378_100509362 | 505 |
| 138 | 3300013307 | Ga0157372_10028188 | Ga0157372_100281882 | 505 |
| 139 | 3300013308 | Ga0157375_10083157 | Ga0157375_100831573 | 505 |
| 140 | 3300014325 | Ga0163163_10000493 | Ga0163163_100004935 | 505 |
| 141 | 3300014968 | Ga0157379_10000255 | Ga0157379_100002557 | 505 |
| 142 | 3300014969 | Ga0157376_10018450 | Ga0157376_100184502 | 505 |
| 143 | 3300015261 | Ga0182006_1000137 | Ga0182006_100013760 | 505 |
| 144 | 3300017792 | Ga0163161_10000016 | Ga0163161_1000001617 | 505 |
| 145 | 3300017792 | Ga0163161_10001225 | Ga0163161_1000122531 | 505 |
| 146 | 3300017792 | Ga0163161_10052731 | Ga0163161_100527311 | 505 |
| 147 | 3300025292 | Ga0209676_1000009 | Ga0209676_1000009735 | 505 |
| 148 | 3300025298 | Ga0209050_1000103 | Ga0209050_1000103138 | 505 |
| 149 | 3300025728 | Ga0207655_1000012 | Ga0207655_1000012271 | 505 |
| 150 | 3300025728 | Ga0207655_1000058 | Ga0207655_1000058104 | 505 |
| 151 | 3300025913 | Ga0207695_10138440 | Ga0207695_101384403 | 505 |
| 152 | 3300025914 | Ga0207671_10000257 | Ga0207671_1000025761 | 505 |
| 153 | 3300025935 | Ga0207709_10000463 | Ga0207709_1000046325 | 505 |
| 154 | 3300026078 | Ga0207702_10246541 | Ga0207702_102465411 | 505 |
| 155 | 3300028800 | Ga0265338_10025749 | Ga0265338_100257497 | 505 |
| 156 | 3300031903 | Ga0307407_10000006 | Ga0307407_10000006119 | 505 |
| 157 | 3300031911 | Ga0307412_10000074 | Ga0307412_1000007457 | 505 |
| 158 | 3300031995 | Ga0307409_100058493 | Ga0307409_1000584931 | 505 |
| 159 | 3300032002 | Ga0307416_100000020 | Ga0307416_10000002065 | 505 |
| 160 | 3300032002 | Ga0307416_100000032 | Ga0307416_10000003229 | 505 |
| 161 | 3300032004 | Ga0307414_10005564 | Ga0307414_100055642 | 505 |
| 162 | 3300038443 | Ga0395901_0051883 | Ga0395901_0051883_252_1769 | 505 |
| 163 | 3300044656 | Ga0466969_0000398 | Ga0466969_0000398_18304_19824 | 505 |
| 164 | 3300044684 | Ga0466966_0000047 | Ga0466966_0000047_4462_5982 | 505 |
| 165 | 3300045049 | Ga0466959_0000035 | Ga0466959_0000035_104066_105586 | 505 |
| 166 | 3300046453 | Ga0495627_000029 | Ga0495627_000029_160921_162438 | 505 |
| 167 | 3300046457 | Ga0495590_0003616 | Ga0495590_0003616_276_1793 | 505 |
| 168 | 3300046460 | Ga0495638_0000054 | Ga0495638_0000054_87339_88868 | 505 |
| 169 | 3300046501 | Ga0495607_0064326 | Ga0495607_0064326_485_2002 | 505 |
| 170 | 3300046507 | Ga0495606_0066448 | Ga0495606_0066448_291_1808 | 505 |
| 171 | 3300046519 | Ga0495632_0004008 | Ga0495632_0004008_348_1865 | 505 |
| 172 | 3300046522 | Ga0495643_0001491 | Ga0495643_0001491_1195_2712 | 505 |
| 173 | 3300046525 | Ga0495663_0000044 | Ga0495663_0000044_28077_29594 | 505 |
| 174 | 3300046558 | Ga0495633_0000039 | Ga0495633_0000039_31115_32647 | 505 |
| 175 | 3300046558 | Ga0495633_0000559 | Ga0495633_0000559_5364_6881 | 505 |
| 176 | 3300046660 | Ga0495625_0000885 | Ga0495625_0000885_13070_14587 | 505 |
| 177 | 3300046660 | Ga0495625_0021871 | Ga0495625_0021871_364_1881 | 505 |
| 178 | 3300047472 | Ga0495686_0000408 | Ga0495686_0000408_66247_67764 | 505 |
| 179 | 3300047472 | Ga0495686_0042915 | Ga0495686_0042915_1333_2850 | 505 |
| 180 | 3300048906 | Ga0496103_0085689 | Ga0496103_0085689_66_1583 | 505 |
| 181 | 3300048919 | Ga0496116_0000037 | Ga0496116_0000037_123711_125228 | 505 |
| 182 | 3300048920 | Ga0496117_0000086 | Ga0496117_0000086_123647_125164 | 505 |
| 183 | 3300048921 | Ga0496118_0000333 | Ga0496118_0000333_44164_45681 | 505 |
| 184 | 3300048922 | Ga0496119_0000037 | Ga0496119_0000037_123696_125213 | 505 |
| 185 | 3300048925 | Ga0496122_0000231 | Ga0496122_0000231_54060_55577 | 505 |
| 186 | 3300048925 | Ga0496122_0005891 | Ga0496122_0005891_7710_9227 | 505 |
| 187 | 3300048926 | Ga0496123_0004737 | Ga0496123_0004737_5064_6581 | 505 |
| 188 | 3300048927 | Ga0496124_0001449 | Ga0496124_0001449_10595_12112 | 505 |
| 189 | 3300048928 | Ga0496125_0009711 | Ga0496125_0009711_4999_6516 | 505 |
| 190 | 3300048929 | Ga0496126_0000726 | Ga0496126_0000726_43499_45016 | 505 |
| 191 | 3300050507 | nmdc:mga05p37_12431_c1 | nmdc:mga05p37_12431_c1_3042_4562 | 505 |
| 192 | 3300053093 | Ga0500651_0028291 | Ga0500651_0028291_452_1984 | 505 |
| 193 | 3300053096 | Ga0500641_0001327 | Ga0500641_0001327_4616_6133 | 505 |
| 194 | 3300025935 | Ga0207709_10000034 | Ga0207709_1000003434 | 507 |
| 195 | iso_pu_bacteria | 2977243572 | 2977247376 | 509 |
| 196 | 3300048929 | Ga0496126_0005129 | Ga0496126_0005129_11937_13715 | 512 |
| 197 | 3300053156 | Ga0500622_0000512 | Ga0500622_0000512_12211_13785 | 512 |
| 198 | 3300053156 | Ga0500622_0002588 | Ga0500622_0002588_598_2259 | 512 |
| 199 | 2162886007 | SwRhRL2b_contig_2170304 | SwRhRL2b_0140.00003550 | 513 |
| 200 | 3300009036 | Ga0105244_10000018 | Ga0105244_10000018162 | 513 |
| 201 | 3300009148 | Ga0105243_10000011 | Ga0105243_1000001133 | 513 |
| 202 | 3300013100 | Ga0157373_10000056 | Ga0157373_1000005645 | 513 |
| 203 | 3300013104 | Ga0157370_10002929 | Ga0157370_1000292915 | 513 |
| 204 | 3300013104 | Ga0157370_10125387 | Ga0157370_101253872 | 513 |
| 205 | 3300013104 | Ga0157370_10127992 | Ga0157370_101279922 | 513 |
| 206 | 3300014969 | Ga0157376_10003160 | Ga0157376_1000316014 | 513 |
| 207 | 3300015265 | Ga0182005_1000123 | Ga0182005_100012339 | 513 |
| 208 | 3300025291 | Ga0209675_1000051 | Ga0209675_1000051143 | 513 |
| 209 | 3300025302 | Ga0207426_1011231 | Ga0207426_10112312 | 513 |
| 210 | 3300048925 | Ga0496122_0000510 | Ga0496122_0000510_6143_7684 | 513 |
| 211 | 3300048925 | Ga0496122_0016532 | Ga0496122_0016532_5033_6577 | 513 |
| 212 | 3300048926 | Ga0496123_0014019 | Ga0496123_0014019_3131_4672 | 513 |
| 213 | 3300048927 | Ga0496124_0055117 | Ga0496124_0055117_1037_2608 | 513 |
| 214 | 3300048928 | Ga0496125_0002543 | Ga0496125_0002543_13599_15143 | 513 |
| 215 | iso_pu_bacteria | 2818991442 | 2819573482 | 513 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1yvp-assembly1.cif.gz_A | ro autoantigen complexed with rnas | 0.8007 | 19 | 502 |
| 1yvr-assembly1.cif.gz_A | ro autoantigen | 0.7643 | 19 | 502 |
| 1yvp-assembly1.cif.gz_A | ro autoantigen complexed with rnas | 0.7569 | 19 | 502 |
| 1yvp-assembly2.cif.gz_B | ro autoantigen complexed with rnas | 0.7509 | 19 | 502 |
| 2i91-assembly2.cif.gz_B | 60kda ro autoantigen in complex with a fragment of misfolded rna | 0.7306 | 19 | 502 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q27274_446_641_3.40.50.410 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;von Willebrand factor, type A domain | 0.8746 | 305 | 496 | 3.40.50.410 |
| af_P10155_345_538_3.40.50.410 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;von Willebrand factor, type A domain | 0.8435 | 307 | 501 | 3.40.50.410 |
| 1yvpA01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;von Willebrand factor, type A domain | 0.8415 | 321 | 502 | 3.40.50.410 |
| af_Q27274_446_641_3.40.50.410 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;von Willebrand factor, type A domain | 0.8293 | 305 | 496 | 3.40.50.410 |
| af_P10155_345_538_3.40.50.410 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;von Willebrand factor, type A domain | 0.8156 | 307 | 501 | 3.40.50.410 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-I0KCY0-F1-model_v4 | Telomerase protein component 1 rTLP1 | 0.9516 | 18 | 513 |
GO:0003723
GO:0005737 GO:0046872 GO:1990904 |
| AF-A0A1N7FZJ7-F1-model_v4 | deleted | 0.9513 | 9 | 513 |
|
| AF-A0A376EF87-F1-model_v4 | TROVE domain | 0.9397 | 9 | 443 |
GO:0003723
GO:0005737 GO:0046872 GO:1990904 |
| AF-A0A1N7FZJ7-F1-model_v4 | deleted | 0.935 | 9 | 513 |
|
| AF-A0A519ZJD9-F1-model_v4 | TROVE domain-containing protein | 0.9344 | 9 | 356 |
GO:0000722
GO:0003720 GO:0070034 |
Predicted Structure (AlphaFold2)
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