F327952

General Info

Members Datasets Scaffolds Average Seq Length
216 184 432 399

Family's Representative Sequence

Representative Sequence 3300046515|Ga0495620_0001213|Ga0495620_0001213_10692_11900
Length 389
Sequence MQSGNVTTPFGRRPMTLALVRQQRATTEIKPGKSADKWKVFRDASEAREPLGLQDRSLAVLDALLSFYPESELRQDTQPVVFPSNAQLTLRAHGIAGATLRRHLALLVEAGLIIRRDSANGKRFVRKGKTGEIESAFGFDLSPLLMRAEELAQIAQQVAAERIAFRRAKENLTICRRDVRKLITAAIEEGADGDWEKIESLYVELVGLLEEMKMLQEEILNRLDLQQKVENNSTNAAHNGRHIQNSNTESLNELEPSSENEQGARPSRNHDQKNLPLKAFPLGIVLRACPEISTYGPGGAIGSWRDLMAAAVTVRSMLGVSPSAYQEACEAMGPENAAVTIACILERAGHINSAGGYLRDLTSKTERGEFSLGPALMALLRANGDRRAG

Samples

Sample ID Description Type Environment
1 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
6 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
7 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
8 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
9 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
10 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
11 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
14 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
15 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
16 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
17 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
18 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
19 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
20 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
21 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
22 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
23 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
26 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
29 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
30 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
31 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
32 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
33 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
34 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
35 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
36 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
37 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
38 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
39 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
40 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
41 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
42 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
43 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
44 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
45 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
46 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
47 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
48 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
49 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
50 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
51 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
52 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
53 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
54 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
55 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
56 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
57 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
58 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
59 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
60 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
61 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
62 2513237093 Rhizobium leguminosarum bv. phaseoli FA23 Isolate Nodule
63 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
64 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
65 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
66 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
67 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
68 2515075009 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
69 2515154113 Rhizobium ruizarguesonis Vc2 Isolate Nodule
70 2517287029 Rhizobium leguminosarum bv. trifolii SRDI565 Isolate Nodule
71 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
72 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
73 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
74 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
75 2551306092 Sinorhizobium meliloti AK75 Isolate Nodule
76 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
77 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
78 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
79 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
80 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
81 2585427593 Rhizobium tropici CF286 Isolate Rhizosphere
82 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
83 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
84 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
85 2643221582 Rhizobium sp. Root651 Isolate Unclassified
86 2643221607 Rhizobium sp. Root73 Isolate Unclassified
87 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
88 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
89 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
90 2643221655 Ensifer sp. Root1252 Isolate Unclassified
91 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
92 2643221712 Ensifer sp. Root258 Isolate Unclassified
93 2643221719 Rhizobium sp. Root274 Isolate Unclassified
94 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
95 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
96 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
97 2765235942 Rhizobium sp. WYCCWR10014 Isolate Nodule
98 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
99 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
100 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
101 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
102 2791355266 Rhizobium sp. L43 Isolate Nodule
103 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
104 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
105 2802429633 Rhizobium anhuiense J3 Isolate Nodule
106 2802429635 Rhizobium anhuiense Y27 Isolate Nodule
107 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
108 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
109 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
110 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
111 2838686498 Rhizobium leguminosarum SEMIA 416 Isolate Nodule
112 2841851746 Rhizobium leguminosarum SEMIA 498 Isolate Nodule
113 2842077413 Rhizobium leguminosarum SEMIA 422 Isolate Nodule
114 2842110456 Rhizobium esperanzae SEMIA 414 Isolate Nodule
115 2842271015 Rhizobium leguminosarum SEMIA 488 Isolate Nodule
116 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
117 2842495871 Rhizobium etli SEMIA 4062 Isolate Nodule
118 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
119 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
120 2844454524 Rhizobium leguminosarum bv. viciae BIHB 1217 Isolate Nodule
121 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
122 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
123 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
124 2857516855 Rhizobium sp. R-72456 Isolate Unclassified
125 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
126 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
127 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
128 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
129 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
130 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
131 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
132 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
133 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
134 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
135 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
136 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
137 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
138 2924172951 Sinorhizobium meliloti USDA1626 Isolate Nodule
139 2933586486 Rhizobium leguminosarum SEMIA 4039 Isolate Nodule
140 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
141 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
142 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
143 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
144 2937042894 Sinorhizobium meliloti USDA1687 Isolate Nodule
145 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
146 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
147 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
148 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
149 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
150 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
151 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
152 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
153 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
154 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
155 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
156 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
157 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
158 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
159 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
160 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
161 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
162 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
163 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
164 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
165 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
166 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
167 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
168 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
169 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
170 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
171 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
172 8005258706 Rhizobium sp. R693 Isolate Nodule
173 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
174 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
175 8005460587 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
176 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
177 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
178 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule
179 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
180 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
181 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule
182 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
183 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
184 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 31.02
Metatranscriptomes 0
Isolates 68.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.13
Nodule 54.63
Rhizoplane 0.46
Rhizosphere 11.11
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495620_0001213 3300046515 Bacteria 15761
2 JGI25162J39368_1002215 3300002737 Bacteria 7994
3 JGI25165J46597_1000950 3300003214 Bacteria 19828
4 JGI25153J46596_10012267 3300003215 Bacteria 3714
5 rootH2_10035992 3300003320 Bacteria 12141
6 Ga0055526_1008581 3300003771 Bacteria 5065
7 Ga0055524_1013829 3300003775 Bacteria 3020
8 Ga0055528_1000191 3300003790 Bacteria 52111
9 Ga0055528_1015055 3300003790 Bacteria 2815
10 Ga0055540_1000347 3300003792 Bacteria 39251
11 Ga0055540_1017451 3300003792 Bacteria 2003
12 Ga0055543_1000920 3300004625 Bacteria 13708
13 Ga0065165_1001497 3300005262 Bacteria 24706
14 Ga0065165_1013681 3300005262 Bacteria 3207
15 Ga0075364_10001189 3300006051 Bacteria 13954
16 Ga0079104_1003830 3300006946 Bacteria 6747
17 Ga0157371_10001149 3300013102 Bacteria 28495
18 Ga0214544_1011809 3300021320 Bacteria 11815
19 Ga0228710_1008686 3300022740 Bacteria 14446
20 Ga0209437_100614 3300025233 Bacteria 21837
21 Ga0209233_1000562 3300025261 Bacteria 19864
22 Ga0209673_1000020 3300025273 Bacteria 430653
23 Ga0209673_1000126 3300025273 Bacteria 167949
24 Ga0209673_1001059 3300025273 Bacteria 31476
25 Ga0209025_1035408 3300025294 Bacteria 2257
26 Ga0209564_1000114 3300025295 Bacteria 209934
27 Ga0209564_1000368 3300025295 Bacteria 83910
28 Ga0209758_1000527 3300025297 Bacteria 61122
29 Ga0209050_1001269 3300025298 Bacteria 29031
30 Ga0209050_1001764 3300025298 Bacteria 21406
31 Ga0209256_1000123 3300025299 Bacteria 165547
32 Ga0209256_1001075 3300025299 Bacteria 31597
33 Ga0209256_1003576 3300025299 Bacteria 10726
34 Ga0207426_1001108 3300025302 Bacteria 24750
35 Ga0209051_1000032 3300025303 Bacteria 383445
36 Ga0209051_1002366 3300025303 Bacteria 13638
37 Ga0209257_1000521 3300025304 Bacteria 66885
38 Ga0209257_1001518 3300025304 Bacteria 27211
39 Ga0209282_1009258 3300027666 Bacteria 6228
40 Ga0307515_10121862 3300028794 Bacteria 2946
41 Ga0307513_10277844 3300031456 Bacteria 1454
42 Ga0315914_1010517 3300031967 Bacteria 11465
43 Ga0315913_1000270 3300033430 Bacteria 40870
44 Ga0395905_0004879 3300037471 Bacteria 13822
45 Ga0451798_0989485 3300041458 Bacteria 2137
46 Ga0451851_0414805 3300041507 Bacteria 2223
47 Ga0451853_1201066 3300041512 Bacteria 2358
48 Ga0451853_4059526 3300041512 Bacteria 2726
49 Ga0495585_0011089 3300046492 Bacteria 5349
50 Ga0495643_0003041 3300046522 Bacteria 12611
51 Ga0495668_0079493 3300046616 Bacteria 1800
52 Ga0495625_0004571 3300046660 Bacteria 13017
53 Ga0495687_012048 3300047443 Bacteria 4597
54 Ga0495686_0138912 3300047472 Bacteria 1435
55 Ga0496118_0035497 3300048921 Bacteria 4047
56 Ga0496120_0059171 3300048923 Bacteria 2148
57 Ga0496122_0062484 3300048925 Bacteria 2726
58 Ga0496123_0009368 3300048926 Bacteria 8828
59 Ga0496124_0017433 3300048927 Bacteria 6767
60 Ga0496126_0000152 3300048929 Bacteria 161615
61 Ga0501033_0000054 3300049570 Bacteria 108163
62 Ga0501035_0001626 3300049822 Bacteria 22754
63 nmdc:mga00v17_85_c1 3300050491 Bacteria 57269
64 Ga0500559_0003955 3300053136 Bacteria 7140
65 Ga0500616_0000108 3300053153 Bacteria 152917
66 Ga0500622_0001073 3300053156 Bacteria 22737
67 Ga0500636_0000091 3300053177 Bacteria 45101
68 2509111253 2508501122 Bacteria 6292184
69 2509111898 2508501122 Bacteria 6292184
70 2509386520 2509276021 Bacteria 7634384
71 2509392760 2509276021 Bacteria 7634384
72 2513573038 2513237084 Bacteria 7231967
73 2513573071 2513237084 Bacteria 7231967
74 2513580883 2513237085 Bacteria 7695351
75 2513600490 2513237088 Bacteria 6927906
76 2513621197 2513237091 Bacteria 6900273
77 2513635509 2513237093 Bacteria 7545552
78 2513869934 2513237138 Bacteria 7368160
79 2513870309 2513237138 Bacteria 7368160
80 2513881832 2513237140 Bacteria 7076289
81 2513914252 2513237144 Bacteria 7530820
82 2513930119 2513237146 Bacteria 7166346
83 2514000761 2513237159 Bacteria 6810126
84 2515109937 2515075009 Bacteria 7288508
85 2515635667 2515154113 Bacteria 7807172
86 2517411874 2517287029 Bacteria 6905599
87 2524460883 2524023209 Bacteria 6679728
88 2530649477 2529292951 Bacteria 6916614
89 2535518009 2534681796 Bacteria 7146037
90 2551709387 2551306089 Bacteria 7162724
91 2551711886 2551306089 Bacteria 7162724
92 2551738584 2551306092 Bacteria 6992595
93 2585168790 2582581283 Bacteria 6030556
94 2585169631 2582581283 Bacteria 6030556
95 2585335919 2582581316 Bacteria 7774528
96 2585403032 2582581867 Bacteria 7184437
97 2585555301 2585427530 Bacteria 7383882
98 2585825226 2585427590 Bacteria 6824633
99 2585840887 2585427593 Bacteria 7141551
100 2585841000 2585427593 Bacteria 7141551
101 2585841050 2585427593 Bacteria 7141551
102 2585993928 2585427633 Bacteria 6413184
103 2599413961 2599185170 Bacteria 7295545
104 2616310032 2615840626 Bacteria 7921970
105 2643918117 2643221582 Bacteria 5804683
106 2644049906 2643221607 Bacteria 6314006
107 2644192460 2643221634 Bacteria 6705461
108 2644203310 2643221636 Bacteria 6583769
109 2644300770 2643221653 Bacteria 4569637
110 2644307402 2643221655 Bacteria 7722067
111 2644485120 2643221686 Bacteria 6310811
112 2644613486 2643221712 Bacteria 7729434
113 2644658992 2643221719 Bacteria 4568197
114 2692320861 2690316117 Bacteria 6800650
115 2720617077 2718218233 Bacteria 6662049
116 2725949133 2724679232 Bacteria 7646494
117 2766063886 2765235942 Bacteria 7445910
118 2792579847 2791355082 Bacteria 5973319
119 2792623762 2791355091 Bacteria 6135441
120 2792630005 2791355092 Bacteria 6248105
121 2792641083 2791355094 Bacteria 7011481
122 2793363148 2791355266 Bacteria 7116587
123 2805931144 2802429605 Bacteria 6875453
124 2805936946 2802429606 Bacteria 6346811
125 2806048247 2802429633 Bacteria 7341974
126 2806063846 2802429635 Bacteria 7650140
127 2819612382 2818991448 Bacteria 6772224
128 2838033498 2838029111 Bacteria 6603031
129 2838042530 2838035591 Bacteria 7166484
130 2838080821 2838074704 Bacteria 6785777
131 2838691050 2838686498 Bacteria 7807632
132 2838693650 2838686498 Bacteria 7807632
133 2841856366 2841851746 Bacteria 7532261
134 2842083217 2842077413 Bacteria 6508645
135 2842117288 2842110456 Bacteria 7656360
136 2842275525 2842271015 Bacteria 7807131
137 2842278119 2842271015 Bacteria 7807131
138 2842480231 2842475841 Bacteria 6603183
139 2842500726 2842495871 Bacteria 6820686
140 2842507643 2842502639 Bacteria 6604161
141 2842526570 2842521101 Bacteria 6569494
142 2844462241 2844454524 Bacteria 7952546
143 2844462338 2844454524 Bacteria 7952546
144 2847423756 2847417321 Bacteria 6913799
145 2854896629 2854896431 Bacteria 5869725
146 2855846592 2855839649 Bacteria 7135830
147 2857524531 2857516855 Bacteria 7787325
148 2896387895 2896384573 Bacteria 7700774
149 2913298770 2913295892 Bacteria 6333755
150 2915983904 2915980308 Bacteria 6624279
151 2915994786 2915993759 Bacteria 7016183
152 2916030777 2916028427 Bacteria 6748433
153 2916059738 2916055098 Bacteria 6758838
154 2920767029 2920760137 Bacteria 7427611
155 2921201961 2921201388 Bacteria 6926299
156 2921238508 2921237296 Bacteria 6876710
157 2921268851 2921263974 Bacteria 6864552
158 2921304386 2921296804 Bacteria 7176999
159 2923562332 2923556063 Bacteria 6793593
160 2924151365 2924150972 Bacteria 7169444
161 2924151792 2924150972 Bacteria 7169444
162 2924177958 2924172951 Bacteria 6749356
163 2933590030 2933586486 Bacteria 7667493
164 2936373867 2936367885 Bacteria 7324495
165 2937014013 2937009748 Bacteria 6746052
166 2937022539 2937016420 Bacteria 6782579
167 2937042826 2937036028 Bacteria 6846469
168 2937047364 2937042894 Bacteria 6741576
169 2937051556 2937049772 Bacteria 6757901
170 2937057667 2937056579 Bacteria 7107896
171 2937062431 2937056579 Bacteria 7107896
172 2937071891 2937071275 Bacteria 6984483
173 2937093783 2937091812 Bacteria 6979387
174 2937094140 2937091812 Bacteria 6979387
175 2937112762 2937106411 Bacteria 6947143
176 2957431398 2957430029 Bacteria 7022557
177 2957459182 2957457609 Bacteria 6967680
178 2957482854 2957478035 Bacteria 6756658
179 2957500069 2957498199 Bacteria 7126688
180 2957504744 2957498199 Bacteria 7126688
181 2960654468 2960652885 Bacteria 7083688
182 2960654911 2960652885 Bacteria 7083688
183 2960684481 2960680706 Bacteria 6624464
184 2964608401 2964607997 Bacteria 7101408
185 2964610274 2964607997 Bacteria 7101408
186 2964642136 2964636051 Bacteria 7091832
187 2964657041 2964656573 Bacteria 7100150
188 2964658014 2964656573 Bacteria 7100150
189 2964706409 2964705432 Bacteria 7114648
190 2967665361 2967664464 Bacteria 6948836
191 2967763395 2967762386 Bacteria 6923502
192 2967777690 2967775926 Bacteria 6738189
193 2970046004 2970040964 Bacteria 6731123
194 2970185639 2970184632 Bacteria 7054431
195 2970186204 2970184632 Bacteria 7054431
196 2977531308 2977530762 Bacteria 6951399
197 2977566774 2977565890 Bacteria 6901543
198 2977584750 2977579622 Bacteria 6772100
199 2989350718 2989349275 Bacteria 6349068
200 3005418221 3005416602 Bacteria 7064308
201 8003574988 8003570095 Bacteria 5747666
202 8003998648 8003992118 Bacteria 7266902
203 8005259872 8005258706 Bacteria 6184835
204 8005293778 8005289223 Bacteria 6634003
205 8005316171 8005314921 Bacteria 7072929
206 8005465756 8005460587 Bacteria 7157962
207 8005488187 8005484373 Bacteria 6297373
208 8005548878 8005542996 Bacteria 7077758
209 8005571470 8005570704 Bacteria 6957481
210 8005645574 8005645114 Bacteria 6950293
211 8018152359 8018150411 Bacteria 5549903
212 8023684864 8023680758 Bacteria 7729763
213 8046770045 8046767195 Bacteria 7547379
214 8049298805 8049293176 Bacteria 6128433
215 8057581447 8057575449 Bacteria 7367519
216 8057581737 8057575449 Bacteria 7367519
217 Ga0495620_0001213
218 JGI25162J39368_1002215
219 JGI25165J46597_1000950
220 JGI25153J46596_10012267
221 rootH2_10035992
222 Ga0055526_1008581
223 Ga0055524_1013829
224 Ga0055528_1000191
225 Ga0055528_1015055
226 Ga0055540_1000347
227 Ga0055540_1017451
228 Ga0055543_1000920
229 Ga0065165_1001497
230 Ga0065165_1013681
231 Ga0075364_10001189
232 Ga0079104_1003830
233 Ga0157371_10001149
234 Ga0214544_1011809
235 Ga0228710_1008686
236 Ga0209437_100614
237 Ga0209233_1000562
238 Ga0209673_1000020
239 Ga0209673_1000126
240 Ga0209673_1001059
241 Ga0209025_1035408
242 Ga0209564_1000114
243 Ga0209564_1000368
244 Ga0209758_1000527
245 Ga0209050_1001269
246 Ga0209050_1001764
247 Ga0209256_1000123
248 Ga0209256_1001075
249 Ga0209256_1003576
250 Ga0207426_1001108
251 Ga0209051_1000032
252 Ga0209051_1002366
253 Ga0209257_1000521
254 Ga0209257_1001518
255 Ga0209282_1009258
256 Ga0307515_10121862
257 Ga0307513_10277844
258 Ga0315914_1010517
259 Ga0315913_1000270
260 Ga0395905_0004879
261 Ga0451798_0989485
262 Ga0451851_0414805
263 Ga0451853_1201066
264 Ga0451853_4059526
265 Ga0495585_0011089
266 Ga0495643_0003041
267 Ga0495668_0079493
268 Ga0495625_0004571
269 Ga0495687_012048
270 Ga0495686_0138912
271 Ga0496118_0035497
272 Ga0496120_0059171
273 Ga0496122_0062484
274 Ga0496123_0009368
275 Ga0496124_0017433
276 Ga0496126_0000152
277 Ga0501033_0000054
278 Ga0501035_0001626
279 nmdc:mga00v17_85_c1
280 Ga0500559_0003955
281 Ga0500616_0000108
282 Ga0500622_0001073
283 Ga0500636_0000091
284 2509111253
285 2509111898
286 2509386520
287 2509392760
288 2513573038
289 2513573071
290 2513580883
291 2513600490
292 2513621197
293 2513635509
294 2513869934
295 2513870309
296 2513881832
297 2513914252
298 2513930119
299 2514000761
300 2515109937
301 2515635667
302 2517411874
303 2524460883
304 2530649477
305 2535518009
306 2551709387
307 2551711886
308 2551738584
309 2585168790
310 2585169631
311 2585335919
312 2585403032
313 2585555301
314 2585825226
315 2585840887
316 2585841000
317 2585841050
318 2585993928
319 2599413961
320 2616310032
321 2643918117
322 2644049906
323 2644192460
324 2644203310
325 2644300770
326 2644307402
327 2644485120
328 2644613486
329 2644658992
330 2692320861
331 2720617077
332 2725949133
333 2766063886
334 2792579847
335 2792623762
336 2792630005
337 2792641083
338 2793363148
339 2805931144
340 2805936946
341 2806048247
342 2806063846
343 2819612382
344 2838033498
345 2838042530
346 2838080821
347 2838691050
348 2838693650
349 2841856366
350 2842083217
351 2842117288
352 2842275525
353 2842278119
354 2842480231
355 2842500726
356 2842507643
357 2842526570
358 2844462241
359 2844462338
360 2847423756
361 2854896629
362 2855846592
363 2857524531
364 2896387895
365 2913298770
366 2915983904
367 2915994786
368 2916030777
369 2916059738
370 2920767029
371 2921201961
372 2921238508
373 2921268851
374 2921304386
375 2923562332
376 2924151365
377 2924151792
378 2924177958
379 2933590030
380 2936373867
381 2937014013
382 2937022539
383 2937042826
384 2937047364
385 2937051556
386 2937057667
387 2937062431
388 2937071891
389 2937093783
390 2937094140
391 2937112762
392 2957431398
393 2957459182
394 2957482854
395 2957500069
396 2957504744
397 2960654468
398 2960654911
399 2960684481
400 2964608401
401 2964610274
402 2964642136
403 2964657041
404 2964658014
405 2964706409
406 2967665361
407 2967763395
408 2967777690
409 2970046004
410 2970185639
411 2970186204
412 2977531308
413 2977566774
414 2977584750
415 2989350718
416 3005418221
417 8003574988
418 8003998648
419 8005259872
420 8005293778
421 8005316171
422 8005465756
423 8005488187
424 8005548878
425 8005571470
426 8005645574
427 8018152359
428 8023684864
429 8046770045
430 8049298805
431 8057581447
432 8057581737

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03428

RP-C

Replication protein C N-terminal domain

13

187

0.98

PF11800

RP-C_C

Replication protein C C-terminal region

281

382

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1jhh-assembly1.cif.gz_A lexa s119a mutant 0.7708 39 127
1jhf-assembly1.cif.gz_A lexa g85d mutant 0.7443 39 127
3jso-assembly1.cif.gz_A classic protein with a new twist: crystal structure of a lexa repressor dna complex 0.7049 39 127
5kbj-assembly1.cif.gz_C structure of rep-dna complex 0.7005 39 102
3jsp-assembly1.cif.gz_B classic protein with a new twist: crystal structure of a lexa repressor dna complex 0.692 39 127
ID Description Score Start End Superfamily
1jhhA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7708 39 127 1.10.10.10
af_P9WHR7_25_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7514 39 106 1.10.10.10
1jhhA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7254 39 127 1.10.10.10
af_A4I182_63_164_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.711 42 108 1.10.10.10
af_P9WN87_5_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.6937 30 126 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A434MHR2-F1-model_v4 Replication initiation protein RepC 0.9718 1 149
AF-Q9EVK1-F1-model_v4 Replication protein 0.9682 22 216
AF-Q9EVK1-F1-model_v4 Replication protein 0.9586 22 216
AF-Q84G64-F1-model_v4 RepC 0.9559 1 202
AF-A0A163XSY7-F1-model_v4 Plasmid replication protein C C-terminal domain-containing protein 0.9486 285 390

Map