F330232

General Info

Members Datasets Scaffolds Average Seq Length
218 143 436 362

Family's Representative Sequence

Representative Sequence 3300041512|Ga0451853_0364337|Ga0451853_0364337_2414_3442
Length 342
Sequence MHYAQNIFIRVHTDAGMYGVGECSAFPMIVGETQATCFEMAKDFAALWKNKNAAAIEERLQELHSFTAFNATIKSAFDMALYDLAAKAAGQPLYRFLGGISKKELETDLTIGIDTPENMAARAVDFVKRGVRIIKIKLGKNAAEDVERVRLIRAAAGASAGLRIDANQGWSYEDAVFALAAMAPYDIQFCEQPMRHWNDDRLPALVKQSPIKIMADESVFDHHDAQRIIAAGACDYVNIKFAKSGGIWEARKIHSVCQQHTIPCMMGGMLESRIALSAFAHFALAHDNVVFYDMDTCMLGHKTDPVTGGVQYKGFFLEVPETPGIGADADSAFLKTLEKVTI

Samples

Sample ID Description Type Environment
1 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
7 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
10 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
11 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
56 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
57 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
84 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
85 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
86 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
89 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
90 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
96 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
97 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
98 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
99 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
100 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
105 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
106 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
107 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
108 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
109 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
110 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
111 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
112 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
113 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
114 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
115 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
116 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
119 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
120 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
121 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
122 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
123 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
124 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
125 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
126 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
127 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
128 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
129 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
130 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
131 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
132 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
133 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
134 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
135 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
136 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
137 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
138 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
139 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
140 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
141 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
142 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
143 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.33
Metatranscriptomes 0
Isolates 3.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.72
Nodule 0
Rhizoplane 0.46
Rhizosphere 83.94
Stem 0
Stem Tuber 0
Unclassified 3.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451853_0364337 3300041512 Bacteria 4408
2 JGI24737J22298_10004411 3300001990 Bacteria 4907
3 JGI24737J22298_10010989 3300001990 Bacteria 2972
4 JGI24735J21928_10000001 3300002067 Bacteria 650042
5 JGI25162J39368_1000089 3300002737 Bacteria 104054
6 rootH1_10113118 3300003316 Bacteria 1565
7 rootH2_10000343 3300003320 Bacteria 102217
8 rootH2_10035331 3300003320 Bacteria 7999
9 rootL2_10081586 3300003322 Bacteria 3961
10 rootL2_10144077 3300003322 Bacteria 2977
11 rootH1_10102135 3300003323 Bacteria 6055
12 Ga0065714_10075054 3300005288 Bacteria 2953
13 Ga0070658_10000018 3300005327 Bacteria 200558
14 Ga0070676_10003126 3300005328 Bacteria 8551
15 Ga0070680_100021226 3300005336 Bacteria 5159
16 Ga0068868_100120114 3300005338 Bacteria 2143
17 Ga0070668_100057739 3300005347 Unclassified 3000
18 Ga0070671_100015831 3300005355 Bacteria 6092
19 Ga0070671_100241683 3300005355 Bacteria 1533
20 Ga0070673_100213647 3300005364 Bacteria 1667
21 Ga0070659_100001402 3300005366 Bacteria 17377
22 Ga0070659_100013342 3300005366 Bacteria 6112
23 Ga0070678_100004572 3300005456 Bacteria 7858
24 Ga0070662_100000225 3300005457 Bacteria 33224
25 Ga0070681_10050482 3300005458 Bacteria 4150
26 Ga0068867_100003673 3300005459 Bacteria 10797
27 Ga0070679_100015739 3300005530 Bacteria 7275
28 Ga0068853_100054852 3300005539 Bacteria 3435
29 Ga0068853_100358038 3300005539 Unclassified 1359
30 Ga0070672_100058368 3300005543 Unclassified 3032
31 Ga0070665_100000072 3300005548 Bacteria 198575
32 Ga0068855_100000850 3300005563 Bacteria 37848
33 Ga0068855_100008083 3300005563 Bacteria 12711
34 Ga0068855_100041848 3300005563 Bacteria 5430
35 Ga0068855_100179698 3300005563 Bacteria 2393
36 Ga0068857_100010152 3300005577 Bacteria 8185
37 Ga0068856_100000263 3300005614 Bacteria 57295
38 Ga0068856_100024693 3300005614 Bacteria 5853
39 Ga0068852_100004151 3300005616 Bacteria 10205
40 Ga0068860_100013899 3300005843 Bacteria 7893
41 Ga0075366_10004619 3300006195 Bacteria 7400
42 Ga0075366_10013771 3300006195 Bacteria 4609
43 Ga0075366_10026872 3300006195 Bacteria 3374
44 Ga0097621_100012896 3300006237 Bacteria 6211
45 Ga0068871_100001609 3300006358 Bacteria 15193
46 Ga0068865_100002175 3300006881 Bacteria 11550
47 Ga0105240_10000237 3300009093 Bacteria 109895
48 Ga0105240_10005142 3300009093 Bacteria 19583
49 Ga0105240_10053400 3300009093 Bacteria 5071
50 Ga0105240_10072572 3300009093 Bacteria 4254
51 Ga0105240_10210254 3300009093 Bacteria 2274
52 Ga0105240_10268587 3300009093 Bacteria 1965
53 Ga0105241_10043015 3300009174 Bacteria 3420
54 Ga0105241_10094559 3300009174 Bacteria 2364
55 Ga0105241_10101592 3300009174 Bacteria 2286
56 Ga0105242_10074647 3300009176 Bacteria 2822
57 Ga0105237_10000589 3300009545 Bacteria 50628
58 Ga0105237_10001732 3300009545 Bacteria 28199
59 Ga0105237_10003190 3300009545 Bacteria 19675
60 Ga0105238_10047577 3300009551 Bacteria 4324
61 Ga0105239_10000132 3300010375 Bacteria 105380
62 Ga0105239_10002156 3300010375 Bacteria 25330
63 Ga0105239_10004736 3300010375 Bacteria 16155
64 Ga0105239_10021843 3300010375 Bacteria 7055
65 Ga0105239_10160556 3300010375 Bacteria 2511
66 Ga0105246_10018121 3300011119 Bacteria 4485
67 Ga0157373_10010004 3300013100 Bacteria 6988
68 Ga0157371_10000251 3300013102 Bacteria 74986
69 Ga0157371_10014703 3300013102 Bacteria 5892
70 Ga0157371_10035204 3300013102 Bacteria 3588
71 Ga0157370_10030775 3300013104 Bacteria 5258
72 Ga0157369_10023620 3300013105 Bacteria 6848
73 Ga0157369_10152862 3300013105 Bacteria 2439
74 Ga0157374_10000135 3300013296 Bacteria 67340
75 Ga0157374_10001744 3300013296 Bacteria 18253
76 Ga0157378_10196139 3300013297 Bacteria 1907
77 Ga0157378_10230194 3300013297 Bacteria 1766
78 Ga0163162_10000010 3300013306 Bacteria 302032
79 Ga0163162_10006518 3300013306 Bacteria 11308
80 Ga0163162_10103148 3300013306 Bacteria 2946
81 Ga0157372_10000266 3300013307 Bacteria 57783
82 Ga0157372_10007965 3300013307 Bacteria 11267
83 Ga0157372_10048221 3300013307 Bacteria 4735
84 Ga0157375_10249604 3300013308 Bacteria 1935
85 Ga0157375_10519043 3300013308 Unclassified 1355
86 Ga0157380_10006635 3300014326 Bacteria 8164
87 Ga0157380_10035880 3300014326 Bacteria 3833
88 Ga0157377_10004848 3300014745 Bacteria 6257
89 Ga0157376_10099429 3300014969 Bacteria 2538
90 Ga0163161_10013124 3300017792 Bacteria 5759
91 Ga0209437_100221 3300025233 Bacteria 104135
92 Ga0209233_1007117 3300025261 Bacteria 3565
93 Ga0207647_10000058 3300025904 Bacteria 84631
94 Ga0207647_10000623 3300025904 Bacteria 27546
95 Ga0207645_10006242 3300025907 Bacteria 8563
96 Ga0207705_10000036 3300025909 Bacteria 200787
97 Ga0207654_10001991 3300025911 Bacteria 10508
98 Ga0207654_10018647 3300025911 Bacteria 3646
99 Ga0207654_10025825 3300025911 Bacteria 3174
100 Ga0207707_10045791 3300025912 Bacteria 3811
101 Ga0207695_10000013 3300025913 Bacteria 821265
102 Ga0207695_10003855 3300025913 Bacteria 20759
103 Ga0207695_10106486 3300025913 Bacteria 2790
104 Ga0207671_10000272 3300025914 Bacteria 77080
105 Ga0207671_10002295 3300025914 Bacteria 20672
106 Ga0207671_10004508 3300025914 Bacteria 13258
107 Ga0207671_10057721 3300025914 Bacteria 2877
108 Ga0207660_10024942 3300025917 Bacteria 4053
109 Ga0207652_10018296 3300025921 Bacteria 5746
110 Ga0207694_10027715 3300025924 Bacteria 4315
111 Ga0207659_10129833 3300025926 Unclassified 1943
112 Ga0207690_10001301 3300025932 Bacteria 15722
113 Ga0207706_10000317 3300025933 Bacteria 52169
114 Ga0207669_10037395 3300025937 Bacteria 2785
115 Ga0207704_10000044 3300025938 Bacteria 86753
116 Ga0207691_10008798 3300025940 Bacteria 9682
117 Ga0207667_10000009 3300025949 Bacteria 603135
118 Ga0207667_10057959 3300025949 Bacteria 4064
119 Ga0207668_10154007 3300025972 Unclassified 1783
120 Ga0207677_10050236 3300026023 Bacteria 2820
121 Ga0207702_10003290 3300026078 Bacteria 14903
122 Ga0207702_10014417 3300026078 Bacteria 6561
123 Ga0207648_10008831 3300026089 Bacteria 9705
124 Ga0207674_10030704 3300026116 Bacteria 5648
125 Ga0207683_10004151 3300026121 Bacteria 12537
126 Ga0207698_10002912 3300026142 Bacteria 10230
127 Ga0268266_10000089 3300028379 Bacteria 198566
128 Ga0268264_10005339 3300028381 Bacteria 10889
129 Ga0307517_10005628 3300028786 Bacteria 18796
130 Ga0307515_10000280 3300028794 Bacteria 125330
131 Ga0307515_10001599 3300028794 Bacteria 50542
132 Ga0307405_10249231 3300031731 Unclassified 1320
133 Ga0307412_10025709 3300031911 Bacteria 3650
134 Ga0307414_10043582 3300032004 Bacteria 3058
135 Ga0307414_10138855 3300032004 Bacteria 1899
136 Ga0307414_10210491 3300032004 Bacteria 1589
137 Ga0307507_10000362 3300033179 Bacteria 93053
138 Ga0307510_10007525 3300033180 Bacteria 12971
139 Ga0373925_0226358 3300037068 Bacteria 1494
140 Ga0395899_0000532 3300037312 Bacteria 41711
141 Ga0395899_0001954 3300037312 Bacteria 16948
142 Ga0395900_0000226 3300037418 Bacteria 88588
143 Ga0395900_0048591 3300037418 Bacteria 4371
144 Ga0395898_0005711 3300037466 Bacteria 13410
145 Ga0395905_0000068 3300037471 Bacteria 177163
146 Ga0395905_0008054 3300037471 Bacteria 10407
147 Ga0395901_0000136 3300038443 Bacteria 95382
148 Ga0395901_0009899 3300038443 Bacteria 9663
149 Ga0439436_0001857 3300041404 Bacteria 6238
150 Ga0451853_2667583 3300041512 Bacteria 2116
151 Ga0439449_0014692 3300042007 Bacteria 2943
152 Ga0439457_002255 3300042014 Bacteria 5577
153 Ga0439462_0002412 3300042015 Bacteria 4340
154 Ga0451577_0082583 3300042876 Unclassified 2867
155 Ga0466969_0012583 3300044656 Bacteria 4460
156 Ga0466961_0056626 3300044693 Bacteria 2498
157 Ga0453684_0038934 3300044712 Bacteria 6487
158 Ga0466959_0000017 3300045049 Bacteria 143170
159 Ga0466959_0010543 3300045049 Bacteria 6613
160 Ga0466958_0004296 3300045836 Bacteria 7503
161 Ga0495650_0000132 3300046471 Bacteria 174226
162 Ga0495585_0000399 3300046492 Bacteria 42055
163 Ga0495585_0011691 3300046492 Bacteria 5191
164 Ga0495583_0069062 3300046506 Bacteria 1557
165 Ga0495606_0000100 3300046507 Bacteria 147592
166 Ga0495606_0092775 3300046507 Bacteria 1854
167 Ga0495610_0000739 3300046512 Bacteria 31000
168 Ga0495616_0001978 3300046513 Bacteria 13788
169 Ga0495616_0007234 3300046513 Bacteria 6652
170 Ga0495648_0019278 3300046524 Bacteria 4802
171 Ga0495648_0067508 3300046524 Bacteria 2091
172 Ga0495609_0004618 3300046538 Bacteria 7482
173 Ga0495622_0025119 3300046557 Bacteria 2783
174 Ga0495633_0000156 3300046558 Bacteria 89387
175 Ga0495668_0000021 3300046616 Bacteria 381308
176 Ga0495625_0000036 3300046660 Bacteria 221680
177 Ga0495625_0000222 3300046660 Bacteria 89536
178 Ga0495625_0001185 3300046660 Bacteria 33419
179 Ga0495625_0017263 3300046660 Bacteria 5651
180 Ga0495625_0018600 3300046660 Bacteria 5417
181 Ga0495625_0029359 3300046660 Bacteria 4114
182 Ga0495661_0002095 3300046665 Bacteria 15654
183 Ga0495661_0021356 3300046665 Bacteria 4222
184 Ga0495661_0027916 3300046665 Bacteria 3619
185 Ga0495658_0069087 3300046683 Bacteria 2047
186 Ga0495671_0049370 3300046692 Bacteria 2098
187 Ga0495671_0079073 3300046692 Bacteria 1612
188 Ga0495649_0000017 3300046694 Bacteria 221685
189 Ga0495660_0020268 3300046810 Bacteria 3811
190 Ga0495687_003877 3300047443 Bacteria 10500
191 Ga0495687_037668 3300047443 Bacteria 2152
192 Ga0495686_0002715 3300047472 Bacteria 16193
193 Ga0495686_0003277 3300047472 Bacteria 14155
194 Ga0495686_0043403 3300047472 Bacteria 2851
195 Ga0495678_006187 3300049459 Bacteria 6407
196 Ga0495682_0044603 3300049460 Bacteria 1622
197 Ga0501223_001256 3300049663 Bacteria 5924
198 nmdc:mga0k408_14271_c1 3300050493 Bacteria 4373
199 nmdc:mga0k408_57029_c1 3300050493 Bacteria 2267
200 nmdc:mga0k408_666_c2 3300050493 Bacteria 7418
201 Ga0500635_0002084 3300053080 Bacteria 4901
202 Ga0500635_0015866 3300053080 Bacteria 2231
203 Ga0500647_0076557 3300053091 Bacteria 1605
204 Ga0500583_0000127 3300053092 Bacteria 35082
205 Ga0500608_000615 3300053122 Bacteria 13102
206 Ga0500608_056620 3300053122 Bacteria 1878
207 Ga0500618_000023 3300053125 Bacteria 152444
208 Ga0500618_012080 3300053125 Bacteria 2272
209 Ga0500622_0002056 3300053156 Bacteria 14993
210 Ga0500624_000673 3300053157 Bacteria 8771
211 2599477104 2599185184 Bacteria 6430550
212 2852626952 2852623160 Bacteria 4376875
213 2884937998 2884933994 Bacteria 4535041
214 2919442207 2919437846 Bacteria 6199444
215 2928079017 2928078545 Bacteria 6534839
216 2928148612 2928147474 Bacteria 6512076
217 2932085666 2932082852 Bacteria 6563563
218 8055590768 8055588893 Bacteria 3619545
219 Ga0451853_0364337
220 JGI24737J22298_10004411
221 JGI24737J22298_10010989
222 JGI24735J21928_10000001
223 JGI25162J39368_1000089
224 rootH1_10113118
225 rootH2_10000343
226 rootH2_10035331
227 rootL2_10081586
228 rootL2_10144077
229 rootH1_10102135
230 Ga0065714_10075054
231 Ga0070658_10000018
232 Ga0070676_10003126
233 Ga0070680_100021226
234 Ga0068868_100120114
235 Ga0070668_100057739
236 Ga0070671_100015831
237 Ga0070671_100241683
238 Ga0070673_100213647
239 Ga0070659_100001402
240 Ga0070659_100013342
241 Ga0070678_100004572
242 Ga0070662_100000225
243 Ga0070681_10050482
244 Ga0068867_100003673
245 Ga0070679_100015739
246 Ga0068853_100054852
247 Ga0068853_100358038
248 Ga0070672_100058368
249 Ga0070665_100000072
250 Ga0068855_100000850
251 Ga0068855_100008083
252 Ga0068855_100041848
253 Ga0068855_100179698
254 Ga0068857_100010152
255 Ga0068856_100000263
256 Ga0068856_100024693
257 Ga0068852_100004151
258 Ga0068860_100013899
259 Ga0075366_10004619
260 Ga0075366_10013771
261 Ga0075366_10026872
262 Ga0097621_100012896
263 Ga0068871_100001609
264 Ga0068865_100002175
265 Ga0105240_10000237
266 Ga0105240_10005142
267 Ga0105240_10053400
268 Ga0105240_10072572
269 Ga0105240_10210254
270 Ga0105240_10268587
271 Ga0105241_10043015
272 Ga0105241_10094559
273 Ga0105241_10101592
274 Ga0105242_10074647
275 Ga0105237_10000589
276 Ga0105237_10001732
277 Ga0105237_10003190
278 Ga0105238_10047577
279 Ga0105239_10000132
280 Ga0105239_10002156
281 Ga0105239_10004736
282 Ga0105239_10021843
283 Ga0105239_10160556
284 Ga0105246_10018121
285 Ga0157373_10010004
286 Ga0157371_10000251
287 Ga0157371_10014703
288 Ga0157371_10035204
289 Ga0157370_10030775
290 Ga0157369_10023620
291 Ga0157369_10152862
292 Ga0157374_10000135
293 Ga0157374_10001744
294 Ga0157378_10196139
295 Ga0157378_10230194
296 Ga0163162_10000010
297 Ga0163162_10006518
298 Ga0163162_10103148
299 Ga0157372_10000266
300 Ga0157372_10007965
301 Ga0157372_10048221
302 Ga0157375_10249604
303 Ga0157375_10519043
304 Ga0157380_10006635
305 Ga0157380_10035880
306 Ga0157377_10004848
307 Ga0157376_10099429
308 Ga0163161_10013124
309 Ga0209437_100221
310 Ga0209233_1007117
311 Ga0207647_10000058
312 Ga0207647_10000623
313 Ga0207645_10006242
314 Ga0207705_10000036
315 Ga0207654_10001991
316 Ga0207654_10018647
317 Ga0207654_10025825
318 Ga0207707_10045791
319 Ga0207695_10000013
320 Ga0207695_10003855
321 Ga0207695_10106486
322 Ga0207671_10000272
323 Ga0207671_10002295
324 Ga0207671_10004508
325 Ga0207671_10057721
326 Ga0207660_10024942
327 Ga0207652_10018296
328 Ga0207694_10027715
329 Ga0207659_10129833
330 Ga0207690_10001301
331 Ga0207706_10000317
332 Ga0207669_10037395
333 Ga0207704_10000044
334 Ga0207691_10008798
335 Ga0207667_10000009
336 Ga0207667_10057959
337 Ga0207668_10154007
338 Ga0207677_10050236
339 Ga0207702_10003290
340 Ga0207702_10014417
341 Ga0207648_10008831
342 Ga0207674_10030704
343 Ga0207683_10004151
344 Ga0207698_10002912
345 Ga0268266_10000089
346 Ga0268264_10005339
347 Ga0307517_10005628
348 Ga0307515_10000280
349 Ga0307515_10001599
350 Ga0307405_10249231
351 Ga0307412_10025709
352 Ga0307414_10043582
353 Ga0307414_10138855
354 Ga0307414_10210491
355 Ga0307507_10000362
356 Ga0307510_10007525
357 Ga0373925_0226358
358 Ga0395899_0000532
359 Ga0395899_0001954
360 Ga0395900_0000226
361 Ga0395900_0048591
362 Ga0395898_0005711
363 Ga0395905_0000068
364 Ga0395905_0008054
365 Ga0395901_0000136
366 Ga0395901_0009899
367 Ga0439436_0001857
368 Ga0451853_2667583
369 Ga0439449_0014692
370 Ga0439457_002255
371 Ga0439462_0002412
372 Ga0451577_0082583
373 Ga0466969_0012583
374 Ga0466961_0056626
375 Ga0453684_0038934
376 Ga0466959_0000017
377 Ga0466959_0010543
378 Ga0466958_0004296
379 Ga0495650_0000132
380 Ga0495585_0000399
381 Ga0495585_0011691
382 Ga0495583_0069062
383 Ga0495606_0000100
384 Ga0495606_0092775
385 Ga0495610_0000739
386 Ga0495616_0001978
387 Ga0495616_0007234
388 Ga0495648_0019278
389 Ga0495648_0067508
390 Ga0495609_0004618
391 Ga0495622_0025119
392 Ga0495633_0000156
393 Ga0495668_0000021
394 Ga0495625_0000036
395 Ga0495625_0000222
396 Ga0495625_0001185
397 Ga0495625_0017263
398 Ga0495625_0018600
399 Ga0495625_0029359
400 Ga0495661_0002095
401 Ga0495661_0021356
402 Ga0495661_0027916
403 Ga0495658_0069087
404 Ga0495671_0049370
405 Ga0495671_0079073
406 Ga0495649_0000017
407 Ga0495660_0020268
408 Ga0495687_003877
409 Ga0495687_037668
410 Ga0495686_0002715
411 Ga0495686_0003277
412 Ga0495686_0043403
413 Ga0495678_006187
414 Ga0495682_0044603
415 Ga0501223_001256
416 nmdc:mga0k408_14271_c1
417 nmdc:mga0k408_57029_c1
418 nmdc:mga0k408_666_c2
419 Ga0500635_0002084
420 Ga0500635_0015866
421 Ga0500647_0076557
422 Ga0500583_0000127
423 Ga0500608_000615
424 Ga0500608_056620
425 Ga0500618_000023
426 Ga0500618_012080
427 Ga0500622_0002056
428 Ga0500624_000673
429 2599477104
430 2852626952
431 2884937998
432 2919442207
433 2928079017
434 2928148612
435 2932085666
436 8055590768

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13378

MR_MLE_C

Enolase C-terminal domain-like

118

333

0.97

PF02746

MR_MLE_N

Mandelate racemase / muconate lactonizing enzyme, N-terminal domain

1

98

0.92

PF07476

MAAL_C

Methylaspartate ammonia-lyase C-terminus

173

293

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3q45-assembly3.cif.gz_C crystal structure of dipeptide epimerase from cytophaga hutchinsonii complexed with mg and dipeptide d-ala-l-val 0.9811 7 370
3q45-assembly3.cif.gz_C crystal structure of dipeptide epimerase from cytophaga hutchinsonii complexed with mg and dipeptide d-ala-l-val 0.9679 7 370
2p88-assembly1.cif.gz_D crystal structure of n-succinyl arg/lys racemase from bacillus cereus atcc 14579 0.9617 7 370
3jva-assembly1.cif.gz_G crystal structure of dipeptide epimerase from enterococcus faecalis v583 0.9525 7 355
3ik4-assembly5.cif.gz_B crystal structure of mandelate racemase/muconate lactonizing protein from herpetosiphon aurantiacus 0.9489 3 358
ID Description Score Start End Superfamily
3q45B01 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;Enolase-like, N-terminal domain 0.9826 7 118 3.30.390.10
3q45A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9693 119 359 3.20.20.120
3q45A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9615 119 359 3.20.20.120
2p88A01 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;Enolase-like, N-terminal domain 0.9569 7 117 3.30.390.10
2p88C02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Enolase-like C-terminal domain 0.9467 120 354 3.20.20.120
ID Description Score Start End GO Terms
AF-A0A4Q3AYU9-F1-model_v4 deleted 0.9953 7 324
AF-A0A4Q3RYJ6-F1-model_v4 Dipeptide epimerase (EC 5.1.1.-) 0.9924 94 370 GO:0000287
GO:0016855
AF-A0A4V1UPU4-F1-model_v4 Dipeptide epimerase 0.9916 7 142
AF-A0A4Q3P4V7-F1-model_v4 deleted 0.9889 7 309
AF-A0A4Q5YAY7-F1-model_v4 deleted 0.9877 5 255

Map