F330280

General Info

Members Datasets Scaffolds Average Seq Length
218 143 436 191

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0076873|Ga0451576_0076873_1134_1796
Length 220
Sequence MAAKVGAGEATALQGGRANNALLAVADGGTVPPAGRCPWCGDDPLYVAYHDDEWGVPCHDERTLFEFLILEGAQAGLSWITILRKRENYRRAFDAFDAQKIACYGDKDVARLLADAGIVRNRLKIAAAIDNARATLALYEAGGSLDDLFWQFVDGRPVINRWKRLDQVPVHTPAAEALSKELKQRGFRFVGPTVIYSHMQATGMVNDHLVSCPRHKALGG

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
3 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
4 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
5 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
6 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
12 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
16 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
17 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
18 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
19 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
20 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
21 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
22 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
23 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
24 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
25 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
26 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
27 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
31 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
32 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
33 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
34 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
35 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
36 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
37 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
38 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
39 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
40 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
41 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
42 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
43 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
44 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
45 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
46 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
47 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
48 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
49 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
50 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
54 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
55 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
56 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
59 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
62 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
63 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
64 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
65 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
66 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
69 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
70 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
71 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
72 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
73 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
74 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
75 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
76 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
81 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
82 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
83 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
84 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
85 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
86 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
87 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
88 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
91 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
92 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
93 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
94 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
95 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
96 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
97 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
100 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
101 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
102 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
103 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
104 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
105 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
106 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
109 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
110 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
111 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
112 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
113 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
114 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
115 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
116 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
117 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
118 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
119 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
120 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
121 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
124 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
125 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
126 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
127 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
128 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
129 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
130 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
131 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
132 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
133 2511231026 Herbaspirillum sp. YR522 Isolate Rhizosphere
134 2600255292 Janthinobacterium lividum NFR18 Isolate Rhizoplane
135 2643221645 Massilia sp. Root351 Isolate Unclassified
136 2643221664 Massilia sp. Root418 Isolate Unclassified
137 2738541280 Massilia sp. GV090 Isolate Unclassified
138 2738541300 Massilia sp. GV016 Isolate Unclassified
139 2738543018 Massilia sp. GV045 Isolate Unclassified
140 2738543030 Massilia sp. GV097 Isolate Unclassified
141 2808606418 Herbaspirillum sp. SJZ107 Isolate Rhizosphere
142 2857547612 Janthinobacterium sp. R-74502 Isolate Unclassified
143 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.5
Metatranscriptomes 0.46
Isolates 5.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.42
Nodule 0
Rhizoplane 3.21
Rhizosphere 87.16
Stem 0
Stem Tuber 0
Unclassified 2.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0076873 3300045051 Bacteria 3475
2 Ga0055526_1020302 3300003771 Bacteria 2372
3 Ga0055537_1000139 3300003773 Bacteria 54248
4 Ga0055524_1007245 3300003775 Bacteria 4737
5 Ga0055534_1000888 3300003784 Bacteria 13603
6 Ga0055528_1001156 3300003790 Bacteria 17098
7 Ga0065165_1000590 3300005262 Bacteria 53214
8 Ga0070714_101226207 3300005435 Bacteria 732
9 Ga0070681_10789955 3300005458 Bacteria 866
10 Ga0070707_100023880 3300005468 Bacteria 5784
11 Ga0070707_100090841 3300005468 Bacteria 2956
12 Ga0068852_100690293 3300005616 Bacteria 1030
13 Ga0068864_100576863 3300005618 Bacteria 1089
14 Ga0081455_10163462 3300005937 Bacteria 1703
15 Ga0075431_101155011 3300006847 Bacteria 738
16 Ga0105250_10025559 3300009092 Bacteria 2379
17 Ga0105242_11496053 3300009176 Bacteria 706
18 Ga0105239_10033637 3300010375 Bacteria 5629
19 Ga0163161_10058037 3300017792 Bacteria 2813
20 Ga0213872_10000005 3300021361 Bacteria 290165
21 Ga0213872_10000230 3300021361 Bacteria 49136
22 Ga0213872_10004908 3300021361 Bacteria 6968
23 Ga0213872_10030418 3300021361 Bacteria 2475
24 Ga0209436_114106 3300025208 Bacteria 1284
25 Ga0209565_1000055 3300025263 Bacteria 201184
26 Ga0209673_1000040 3300025273 Bacteria 312633
27 Ga0209130_1000195 3300025284 Bacteria 83371
28 Ga0209675_1000052 3300025291 Bacteria 201332
29 Ga0209564_1000121 3300025295 Bacteria 204081
30 Ga0209256_1000054 3300025299 Bacteria 298431
31 Ga0209256_1000100 3300025299 Bacteria 201246
32 Ga0207696_1053682 3300025711 Bacteria 1146
33 Ga0207684_10071703 3300025910 Bacteria 2943
34 Ga0207646_10023343 3300025922 Bacteria 5683
35 Ga0207646_10108058 3300025922 Bacteria 2496
36 Ga0207428_10024048 3300027907 Bacteria 5116
37 Ga0265336_10113256 3300028666 Bacteria 808
38 Ga0265338_10068361 3300028800 Unclassified 3061
39 Ga0265762_1037114 3300030760 Bacteria 943
40 Ga0265327_10005040 3300031251 Bacteria 11291
41 Ga0265327_10031593 3300031251 Bacteria 2972
42 Ga0307408_100000312 3300031548 Bacteria 46592
43 Ga0265314_10003573 3300031711 Bacteria 14976
44 Ga0316576_10002774 3300031727 Bacteria 10062
45 Ga0316576_10025686 3300031727 Bacteria 4126
46 Ga0316576_10073243 3300031727 Bacteria 2530
47 Ga0316576_10076068 3300031727 Bacteria 2484
48 Ga0316578_10122226 3300031728 Bacteria 1565
49 Ga0316578_10466652 3300031728 Unclassified 745
50 Ga0316577_10075557 3300031733 Bacteria 1881
51 Ga0316577_10419416 3300031733 Bacteria 760
52 Ga0307414_10026021 3300032004 Bacteria 3759
53 Ga0316580_10002381 3300032139 Bacteria 5157
54 Ga0373949_0087218 3300035090 Bacteria 839
55 Ga0373932_0094620 3300035112 Bacteria 964
56 Ga0373941_0253045 3300035115 Bacteria 688
57 Ga0316574_0138767 3300035398 Unclassified 1566
58 Ga0316574_0179685 3300035398 Bacteria 1361
59 Ga0316574_0312975 3300035398 Unclassified 997
60 Ga0316574_0493643 3300035398 Bacteria 764
61 Ga0373931_0439931 3300035691 Bacteria 832
62 Ga0373933_0514407 3300035724 Bacteria 785
63 Ga0316582_0055759 3300036647 Bacteria 2520
64 Ga0316582_0149602 3300036647 Bacteria 1578
65 Ga0316584_0001442 3300036712 Bacteria 14252
66 Ga0316584_0108684 3300036712 Bacteria 2075
67 Ga0316584_0381400 3300036712 Bacteria 1007
68 Ga0395899_0003811 3300037312 Bacteria 11910
69 Ga0395900_0449301 3300037418 Bacteria 1245
70 Ga0395901_0032110 3300038443 Bacteria 5417
71 Ga0436361_0085135 3300039447 Bacteria 33261
72 Ga0436361_0089479 3300039447 Bacteria 55221
73 Ga0436361_0465236 3300039447 Bacteria 12354
74 Ga0436361_0700785 3300039447 Bacteria 4349
75 Ga0436361_0915871 3300039447 Bacteria 7452
76 Ga0451797_0345526 3300041453 Bacteria 2648
77 Ga0450904_000023 3300042139 Bacteria 36559
78 Ga0450918_001672 3300042531 Bacteria 4349
79 Ga0451577_0000676 3300042876 Bacteria 53730
80 Ga0453683_0049841 3300044673 Bacteria 2624
81 Ga0453683_0381779 3300044673 Bacteria 907
82 Ga0466965_0005832 3300044683 Bacteria 5558
83 Ga0453684_0000005 3300044712 Bacteria 1431632
84 Ga0453684_0008907 3300044712 Bacteria 17767
85 Ga0453684_0055560 3300044712 Bacteria 5146
86 Ga0466968_0008926 3300044735 Bacteria 3848
87 Ga0466970_0006356 3300044765 Bacteria 5904
88 Ga0466959_0002610 3300045049 Bacteria 11572
89 Ga0451576_0000227 3300045051 Bacteria 137818
90 Ga0451576_0001593 3300045051 Bacteria 38143
91 Ga0451576_0030579 3300045051 Bacteria 5754
92 Ga0451576_0044361 3300045051 Unclassified 4687
93 Ga0451576_0135601 3300045051 Bacteria 2567
94 Ga0495603_0041864 3300046455 Bacteria 2739
95 Ga0495590_0070045 3300046457 Bacteria 1230
96 Ga0495629_0016088 3300046459 Bacteria 5373
97 Ga0495629_0720264 3300046459 Bacteria 662
98 Ga0495638_0073937 3300046460 Bacteria 2079
99 Ga0495651_0006368 3300046462 Bacteria 9033
100 Ga0495650_0000307 3300046471 Bacteria 88863
101 Ga0495582_0027637 3300046473 Bacteria 3111
102 Ga0495584_0007940 3300046491 Bacteria 5518
103 Ga0495584_0086712 3300046491 Bacteria 1577
104 Ga0495585_0000660 3300046492 Bacteria 31723
105 Ga0495585_0010565 3300046492 Bacteria 5492
106 Ga0495585_0118893 3300046492 Bacteria 1399
107 Ga0495585_0129842 3300046492 Bacteria 1327
108 Ga0495594_0018259 3300046499 Bacteria 3713
109 Ga0495596_0002635 3300046500 Bacteria 9499
110 Ga0495596_0011185 3300046500 Bacteria 3880
111 Ga0495607_0004071 3300046501 Bacteria 10949
112 Ga0495607_0029108 3300046501 Bacteria 3402
113 Ga0495607_0037727 3300046501 Bacteria 2900
114 Ga0495583_0023892 3300046506 Bacteria 3082
115 Ga0495606_0000090 3300046507 Bacteria 154737
116 Ga0495606_0001184 3300046507 Bacteria 36761
117 Ga0495606_0016201 3300046507 Bacteria 5695
118 Ga0495628_0001984 3300046516 Bacteria 18556
119 Ga0495630_0248317 3300046517 Bacteria 1359
120 Ga0495631_0003276 3300046518 Bacteria 8899
121 Ga0495631_0009826 3300046518 Bacteria 4762
122 Ga0495631_0015413 3300046518 Bacteria 3663
123 Ga0495643_0051061 3300046522 Bacteria 2225
124 Ga0495643_0061595 3300046522 Bacteria 1989
125 Ga0495644_0017184 3300046523 Bacteria 2767
126 Ga0495666_0003020 3300046526 Bacteria 8447
127 Ga0495666_0021745 3300046526 Bacteria 3175
128 Ga0495666_0027515 3300046526 Bacteria 2798
129 Ga0495642_0002800 3300046528 Bacteria 6980
130 Ga0495642_0051023 3300046528 Bacteria 1702
131 Ga0495652_0178000 3300046529 Bacteria 1635
132 Ga0495654_0086618 3300046530 Bacteria 1459
133 Ga0495665_0020269 3300046531 Bacteria 3573
134 Ga0495586_0025070 3300046535 Bacteria 3190
135 Ga0495586_0166009 3300046535 Bacteria 1246
136 Ga0495587_0021441 3300046536 Bacteria 3985
137 Ga0495609_0000738 3300046538 Bacteria 24861
138 Ga0495609_0005263 3300046538 Bacteria 6865
139 Ga0495597_0041578 3300046542 Bacteria 2052
140 Ga0495597_0045424 3300046542 Bacteria 1949
141 Ga0495645_0015994 3300046543 Bacteria 5348
142 Ga0495622_0027506 3300046557 Bacteria 2654
143 Ga0495622_0106081 3300046557 Bacteria 1287
144 Ga0495622_0145495 3300046557 Bacteria 1074
145 Ga0495622_0273189 3300046557 Bacteria 740
146 Ga0495633_0000353 3300046558 Bacteria 50204
147 Ga0495633_0019058 3300046558 Bacteria 3473
148 Ga0495633_0097289 3300046558 Bacteria 1367
149 Ga0495633_0107395 3300046558 Bacteria 1294
150 Ga0495667_0134261 3300046559 Bacteria 1596
151 Ga0495668_0015219 3300046616 Bacteria 4495
152 Ga0495668_0017709 3300046616 Bacteria 4127
153 Ga0495668_0115626 3300046616 Bacteria 1467
154 Ga0495611_0013811 3300046648 Bacteria 3443
155 Ga0495611_0088710 3300046648 Bacteria 1428
156 Ga0495625_0006070 3300046660 Bacteria 10844
157 Ga0495625_0011526 3300046660 Bacteria 7202
158 Ga0495659_0000055 3300046664 Bacteria 49804
159 Ga0495659_0000588 3300046664 Bacteria 13397
160 Ga0495661_0000539 3300046665 Bacteria 39123
161 Ga0495661_0058568 3300046665 Bacteria 2295
162 Ga0495588_0053840 3300046674 Bacteria 2075
163 Ga0495588_0162094 3300046674 Bacteria 1182
164 Ga0495646_0008976 3300046680 Bacteria 6346
165 Ga0495647_0135186 3300046681 Bacteria 1048
166 Ga0495669_0000176 3300046684 Bacteria 40422
167 Ga0495670_0000301 3300046691 Bacteria 23331
168 Ga0495670_0007427 3300046691 Bacteria 5380
169 Ga0495670_0280618 3300046691 Bacteria 891
170 Ga0495671_0000986 3300046692 Bacteria 19847
171 Ga0495671_0041077 3300046692 Bacteria 2330
172 Ga0495671_0202284 3300046692 Bacteria 963
173 Ga0495649_0016124 3300046694 Bacteria 4240
174 Ga0495589_0050504 3300046794 Bacteria 2057
175 Ga0495600_0337143 3300046809 Bacteria 946
176 Ga0495660_0021297 3300046810 Bacteria 3713
177 Ga0495660_0085380 3300046810 Bacteria 1649
178 Ga0495604_0216863 3300047317 Bacteria 1320
179 Ga0495636_0009251 3300047318 Bacteria 3879
180 Ga0495674_0004065 3300047319 Bacteria 14151
181 Ga0495672_0000013 3300047320 Bacteria 511827
182 Ga0495672_0000591 3300047320 Bacteria 40983
183 Ga0495676_0007739 3300047321 Bacteria 9859
184 Ga0495676_0057041 3300047321 Bacteria 3084
185 Ga0495676_0064522 3300047321 Bacteria 2847
186 Ga0495683_0152191 3300047323 Bacteria 1076
187 Ga0495675_0195263 3300047444 Bacteria 1234
188 Ga0495677_0019316 3300047445 Bacteria 2471
189 Ga0495679_002994 3300047446 Bacteria 8320
190 Ga0495673_0045330 3300047469 Bacteria 1955
191 Ga0495681_0000684 3300047470 Bacteria 25808
192 Ga0495681_0025422 3300047470 Bacteria 3098
193 Ga0495686_0026098 3300047472 Bacteria 3824
194 Ga0495686_0161797 3300047472 Bacteria 1307
195 Ga0495593_0010690 3300047673 Bacteria 5291
196 Ga0495602_0075385 3300048088 Bacteria 2863
197 Ga0495626_0026903 3300048091 Bacteria 2799
198 Ga0496100_0671847 3300048903 Bacteria 807
199 Ga0496104_0509374 3300048907 Bacteria 1115
200 Ga0496115_0003150 3300048918 Bacteria 11862
201 Ga0496115_0025763 3300048918 Bacteria 4583
202 Ga0496115_0896450 3300048918 Bacteria 684
203 Ga0495678_020762 3300049459 Bacteria 2902
204 Ga0501238_000159 3300049671 Bacteria 10482
205 Ga0501238_006928 3300049671 Bacteria 1467
206 nmdc:mga06r32_1113779_c1 3300050510 Bacteria 738
207 nmdc:mga08y16_5468_c1 3300050511 Bacteria 13283
208 2511383613 2511231026 Bacteria 5225445
209 2601672174 2600255292 Bacteria 6300551
210 2644254680 2643221645 Bacteria 7207331
211 2644360225 2643221664 Bacteria 7272945
212 2738741862 2738541280 Bacteria 6630198
213 2738845839 2738541300 Bacteria 6675882
214 2739276735 2738543018 Bacteria 6718814
215 2739345779 2738543030 Bacteria 6719714
216 2809145701 2808606418 Bacteria 6724496
217 2857549206 2857547612 Bacteria 6179999
218 2885083059 2885080285 Bacteria 6355622
219 Ga0451576_0076873
220 Ga0055526_1020302
221 Ga0055537_1000139
222 Ga0055524_1007245
223 Ga0055534_1000888
224 Ga0055528_1001156
225 Ga0065165_1000590
226 Ga0070714_101226207
227 Ga0070681_10789955
228 Ga0070707_100023880
229 Ga0070707_100090841
230 Ga0068852_100690293
231 Ga0068864_100576863
232 Ga0081455_10163462
233 Ga0075431_101155011
234 Ga0105250_10025559
235 Ga0105242_11496053
236 Ga0105239_10033637
237 Ga0163161_10058037
238 Ga0213872_10000005
239 Ga0213872_10000230
240 Ga0213872_10004908
241 Ga0213872_10030418
242 Ga0209436_114106
243 Ga0209565_1000055
244 Ga0209673_1000040
245 Ga0209130_1000195
246 Ga0209675_1000052
247 Ga0209564_1000121
248 Ga0209256_1000054
249 Ga0209256_1000100
250 Ga0207696_1053682
251 Ga0207684_10071703
252 Ga0207646_10023343
253 Ga0207646_10108058
254 Ga0207428_10024048
255 Ga0265336_10113256
256 Ga0265338_10068361
257 Ga0265762_1037114
258 Ga0265327_10005040
259 Ga0265327_10031593
260 Ga0307408_100000312
261 Ga0265314_10003573
262 Ga0316576_10002774
263 Ga0316576_10025686
264 Ga0316576_10073243
265 Ga0316576_10076068
266 Ga0316578_10122226
267 Ga0316578_10466652
268 Ga0316577_10075557
269 Ga0316577_10419416
270 Ga0307414_10026021
271 Ga0316580_10002381
272 Ga0373949_0087218
273 Ga0373932_0094620
274 Ga0373941_0253045
275 Ga0316574_0138767
276 Ga0316574_0179685
277 Ga0316574_0312975
278 Ga0316574_0493643
279 Ga0373931_0439931
280 Ga0373933_0514407
281 Ga0316582_0055759
282 Ga0316582_0149602
283 Ga0316584_0001442
284 Ga0316584_0108684
285 Ga0316584_0381400
286 Ga0395899_0003811
287 Ga0395900_0449301
288 Ga0395901_0032110
289 Ga0436361_0085135
290 Ga0436361_0089479
291 Ga0436361_0465236
292 Ga0436361_0700785
293 Ga0436361_0915871
294 Ga0451797_0345526
295 Ga0450904_000023
296 Ga0450918_001672
297 Ga0451577_0000676
298 Ga0453683_0049841
299 Ga0453683_0381779
300 Ga0466965_0005832
301 Ga0453684_0000005
302 Ga0453684_0008907
303 Ga0453684_0055560
304 Ga0466968_0008926
305 Ga0466970_0006356
306 Ga0466959_0002610
307 Ga0451576_0000227
308 Ga0451576_0001593
309 Ga0451576_0030579
310 Ga0451576_0044361
311 Ga0451576_0135601
312 Ga0495603_0041864
313 Ga0495590_0070045
314 Ga0495629_0016088
315 Ga0495629_0720264
316 Ga0495638_0073937
317 Ga0495651_0006368
318 Ga0495650_0000307
319 Ga0495582_0027637
320 Ga0495584_0007940
321 Ga0495584_0086712
322 Ga0495585_0000660
323 Ga0495585_0010565
324 Ga0495585_0118893
325 Ga0495585_0129842
326 Ga0495594_0018259
327 Ga0495596_0002635
328 Ga0495596_0011185
329 Ga0495607_0004071
330 Ga0495607_0029108
331 Ga0495607_0037727
332 Ga0495583_0023892
333 Ga0495606_0000090
334 Ga0495606_0001184
335 Ga0495606_0016201
336 Ga0495628_0001984
337 Ga0495630_0248317
338 Ga0495631_0003276
339 Ga0495631_0009826
340 Ga0495631_0015413
341 Ga0495643_0051061
342 Ga0495643_0061595
343 Ga0495644_0017184
344 Ga0495666_0003020
345 Ga0495666_0021745
346 Ga0495666_0027515
347 Ga0495642_0002800
348 Ga0495642_0051023
349 Ga0495652_0178000
350 Ga0495654_0086618
351 Ga0495665_0020269
352 Ga0495586_0025070
353 Ga0495586_0166009
354 Ga0495587_0021441
355 Ga0495609_0000738
356 Ga0495609_0005263
357 Ga0495597_0041578
358 Ga0495597_0045424
359 Ga0495645_0015994
360 Ga0495622_0027506
361 Ga0495622_0106081
362 Ga0495622_0145495
363 Ga0495622_0273189
364 Ga0495633_0000353
365 Ga0495633_0019058
366 Ga0495633_0097289
367 Ga0495633_0107395
368 Ga0495667_0134261
369 Ga0495668_0015219
370 Ga0495668_0017709
371 Ga0495668_0115626
372 Ga0495611_0013811
373 Ga0495611_0088710
374 Ga0495625_0006070
375 Ga0495625_0011526
376 Ga0495659_0000055
377 Ga0495659_0000588
378 Ga0495661_0000539
379 Ga0495661_0058568
380 Ga0495588_0053840
381 Ga0495588_0162094
382 Ga0495646_0008976
383 Ga0495647_0135186
384 Ga0495669_0000176
385 Ga0495670_0000301
386 Ga0495670_0007427
387 Ga0495670_0280618
388 Ga0495671_0000986
389 Ga0495671_0041077
390 Ga0495671_0202284
391 Ga0495649_0016124
392 Ga0495589_0050504
393 Ga0495600_0337143
394 Ga0495660_0021297
395 Ga0495660_0085380
396 Ga0495604_0216863
397 Ga0495636_0009251
398 Ga0495674_0004065
399 Ga0495672_0000013
400 Ga0495672_0000591
401 Ga0495676_0007739
402 Ga0495676_0057041
403 Ga0495676_0064522
404 Ga0495683_0152191
405 Ga0495675_0195263
406 Ga0495677_0019316
407 Ga0495679_002994
408 Ga0495673_0045330
409 Ga0495681_0000684
410 Ga0495681_0025422
411 Ga0495686_0026098
412 Ga0495686_0161797
413 Ga0495593_0010690
414 Ga0495602_0075385
415 Ga0495626_0026903
416 Ga0496100_0671847
417 Ga0496104_0509374
418 Ga0496115_0003150
419 Ga0496115_0025763
420 Ga0496115_0896450
421 Ga0495678_020762
422 Ga0501238_000159
423 Ga0501238_006928
424 nmdc:mga06r32_1113779_c1
425 nmdc:mga08y16_5468_c1
426 2511383613
427 2601672174
428 2644254680
429 2644360225
430 2738741862
431 2738845839
432 2739276735
433 2739345779
434 2809145701
435 2857549206
436 2885083059

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03352

Adenine_glyco

Methyladenine glycosylase

39

215

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ofk-assembly1.cif.gz_A crystal structure of 3-methyladenine dna glycosylase i (tag) 0.9749 5 180
4ai5-assembly3.cif.gz_C crystal structure of y16f of 3-methyladenine dna glycosylase i (tag) in complex with 3-methyladenine 0.9579 6 180
4aia-assembly4.cif.gz_D the structural basis of 3-methyladenine recognition by 3- methyladenine dna glycosylase i (tag) from staphylococcus aureus 0.9517 4 180
4ai4-assembly1.cif.gz_A crystal structure of e38q mutant of 3-methyladenine dna glycosylase i from staphylococcus aureus 0.9476 6 180
2ofk-assembly1.cif.gz_A crystal structure of 3-methyladenine dna glycosylase i (tag) 0.938 5 180
ID Description Score Start End Superfamily
af_P05100_1_187_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9828 4 179 1.10.340.30
af_Q2FXR7_1_186_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9578 6 180 1.10.340.30
af_C6TKE8_117_301_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9535 4 182 1.10.340.30
af_A0A1D6I4F4_25_202_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9223 11 181 1.10.340.30
af_P05100_1_187_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9206 4 179 1.10.340.30
ID Description Score Start End GO Terms
AF-A0A1H3EQR0-F1-model_v4 DNA-3-methyladenine glycosylase I 0.9929 1 184 GO:0006284
GO:0008725
GO:0046872
AF-A0A2V7Q6M6-F1-model_v4 DNA-3-methyladenine glycosylase I 0.9898 18 185 GO:0006284
GO:0008725
GO:0046872
AF-A0A4Q3X5K2-F1-model_v4 deleted 0.9897 18 182
AF-A0A800CXU2-F1-model_v4 DNA-3-methyladenine glycosylase I 0.9895 3 185 GO:0006284
GO:0008725
GO:0046872
AF-A0A0N0XKE9-F1-model_v4 DNA-3-methyladenine glycosylase 1 (EC 3.2.2.20) 0.9894 1 182 GO:0006284
GO:0008725
GO:0046872

Map