F330630

General Info

Members Datasets Scaffolds Average Seq Length
219 135 439 388

Family's Representative Sequence

Representative Sequence 3300003322|rootL2_10122018|rootL2_101220182
Length 404
Sequence MSNSLLTPTQVTRKALQVLHQKLNFIGTINRQYDDSFAQTGAKIGDSLKIRLPNRYTVTDGAIMEVQDTSETSVTLQVATQKHVAMSFGAAELALSLDDFSERILEPAMAVLAAKVERDVISQAVKATWHQTGTAGSALTLAAVLAAGGKMDDALTPEGKRTCLLSTQGNIDLVDALKGLFQDPKQVSAQYRDGVMGHAVGFDFMKSSLMLPFTPGSEVASAVAGSASTSTCTINGAGQTGATLTVANGSSKTFLKGDVIILPGVNRVHPETKDDTGVPQQFVVTADVTAGGTSISISPSIVTSGATQNVTASPTDTAKIGKLGVASTAYGMNLAYHKDAFAFATADLPLPKGAEFAAREVYDGISLRIWKDRDITNDAFPARVDILYGTQAIRPQLASRIAGS

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
3 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
4 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
5 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
19 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
36 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
40 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
54 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
56 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
57 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
89 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
90 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
91 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
92 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
99 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
102 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
103 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
104 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
105 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
106 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
107 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
108 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
109 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
110 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
111 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
112 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
113 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
114 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
115 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
116 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
117 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
118 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
119 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
120 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
121 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
122 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
123 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
127 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
131 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
132 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
133 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
134 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
135 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.54
Metatranscriptomes 0.46
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.11
Nodule 0
Rhizoplane 1.37
Rhizosphere 89.5
Stem 0
Stem Tuber 0
Unclassified 2.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10122018 3300003322 Viruses 2229
2 JGI24748J21848_1000102 3300002074 Viruses 19078
3 JGI24749J21850_1000011 3300002076 Bacteria 37934
4 JGI24034J26672_10000061 3300002239 Bacteria 39844
5 JGI25165J46597_1000003 3300003214 Bacteria 694080
6 rootH1_10013257 3300003316 Viruses 11763
7 rootH1_10013257 3300003323 Bacteria 4964
8 Ga0070658_10058891 3300005327 Bacteria 3127
9 Ga0070683_100161984 3300005329 Unclassified 2122
10 Ga0070670_100025242 3300005331 Bacteria 5114
11 Ga0070682_100055355 3300005337 Unclassified 2491
12 Ga0068868_100021455 3300005338 Bacteria 4863
13 Ga0070660_100021975 3300005339 Bacteria 4712
14 Ga0070689_100000182 3300005340 Bacteria 37966
15 Ga0070668_100000273 3300005347 Bacteria 34231
16 Ga0070668_100002158 3300005347 Bacteria 14400
17 Ga0070668_100117161 3300005347 Bacteria 2125
18 Ga0070673_100000106 3300005364 Bacteria 38006
19 Ga0070673_100006127 3300005364 Bacteria 7794
20 Ga0070688_100000148 3300005365 Bacteria 38006
21 Ga0070659_100070283 3300005366 Bacteria 2781
22 Ga0070667_100072028 3300005367 Bacteria 2944
23 Ga0070701_10007804 3300005438 Unclassified 4595
24 Ga0070678_100000171 3300005456 Bacteria 27795
25 Ga0070678_100000288 3300005456 Bacteria 23300
26 Ga0070678_100004974 3300005456 Bacteria 7614
27 Ga0070662_100117042 3300005457 Bacteria 2038
28 Ga0070681_10081459 3300005458 Bacteria 3192
29 Ga0070685_10000217 3300005466 Bacteria 37986
30 Ga0070679_100011489 3300005530 Bacteria 8439
31 Ga0070679_100064983 3300005530 Bacteria 3637
32 Ga0070672_100000153 3300005543 Bacteria 37956
33 Ga0070672_100002656 3300005543 Bacteria 11418
34 Ga0070665_100000015 3300005548 Bacteria 462744
35 Ga0070665_100000774 3300005548 Bacteria 42048
36 Ga0070665_100000908 3300005548 Bacteria 38006
37 Ga0070665_100000965 3300005548 Bacteria 36573
38 Ga0070665_100008223 3300005548 Bacteria 10561
39 Ga0070665_100012107 3300005548 Bacteria 8702
40 Ga0070665_100034800 3300005548 Bacteria 5067
41 Ga0068855_100027623 3300005563 Bacteria 6788
42 Ga0068855_100116897 3300005563 Bacteria 3056
43 Ga0068856_100129337 3300005614 Bacteria 2529
44 Ga0070702_100001330 3300005615 Bacteria 10029
45 Ga0068859_100000531 3300005617 Bacteria 37888
46 Ga0068863_100120503 3300005841 Bacteria 2501
47 Ga0068862_100000486 3300005844 Bacteria 42453
48 Ga0068862_100001727 3300005844 Bacteria 19761
49 Ga0097621_100000617 3300006237 Bacteria 25131
50 Ga0097621_100001106 3300006237 Bacteria 18829
51 Ga0097621_100012217 3300006237 Bacteria 6355
52 Ga0097621_100164643 3300006237 Bacteria 1908
53 Ga0068871_100000865 3300006358 Bacteria 20122
54 Ga0068871_100001502 3300006358 Bacteria 15625
55 Ga0068871_100006343 3300006358 Bacteria 8358
56 Ga0068871_100015399 3300006358 Bacteria 5722
57 Ga0068871_100104739 3300006358 Viruses 2373
58 Ga0075430_100094132 3300006846 Viruses 2505
59 Ga0068865_100001343 3300006881 Bacteria 14322
60 Ga0068865_100004233 3300006881 Bacteria 8655
61 Ga0097620_100000531 3300006931 Bacteria 37888
62 Ga0105240_10019631 3300009093 Bacteria 9026
63 Ga0105240_10049123 3300009093 Bacteria 5328
64 Ga0105240_10056123 3300009093 Viruses 4928
65 Ga0105247_10000379 3300009101 Bacteria 37805
66 Ga0105241_10294648 3300009174 Unclassified 1390
67 Ga0105242_10037223 3300009176 Viruses 3908
68 Ga0105248_10000753 3300009177 Bacteria 36267
69 Ga0105248_10093574 3300009177 Bacteria 3385
70 Ga0105238_10014521 3300009551 Bacteria 7964
71 Ga0105238_10085772 3300009551 Bacteria 3137
72 Ga0105238_10104168 3300009551 Viruses 2818
73 Ga0105238_10172849 3300009551 Bacteria 2137
74 Ga0105239_10269190 3300010375 Bacteria 1916
75 Ga0105239_10284790 3300010375 Bacteria 1861
76 Ga0157369_10000501 3300013105 Bacteria 51666
77 Ga0157374_10032383 3300013296 Bacteria 4759
78 Ga0163162_10001430 3300013306 Bacteria 22231
79 Ga0157372_10215993 3300013307 Bacteria 2223
80 Ga0157375_10001233 3300013308 Bacteria 22085
81 Ga0157375_10005352 3300013308 Bacteria 11153
82 Ga0163163_10016832 3300014325 Bacteria 6805
83 Ga0157379_10000040 3300014968 Bacteria 79019
84 Ga0157379_10061536 3300014968 Bacteria 3357
85 Ga0157376_10000516 3300014969 Bacteria 24889
86 Ga0157376_10005054 3300014969 Bacteria 9199
87 Ga0157376_10096734 3300014969 Bacteria 2570
88 Ga0163161_10009231 3300017792 Bacteria 6817
89 Ga0163161_10155813 3300017792 Bacteria 1739
90 Ga0163161_10192645 3300017792 Bacteria 1568
91 Ga0206353_11652894 3300020082 Unclassified 1320
92 Ga0213876_10008775 3300021384 Bacteria 5459
93 Ga0209233_1000015 3300025261 Bacteria 980563
94 Ga0209256_1003034 3300025299 Bacteria 12393
95 Ga0209257_1002222 3300025304 Bacteria 19963
96 Ga0207656_10022417 3300025321 Bacteria 2534
97 Ga0207710_10002640 3300025900 Bacteria 8268
98 Ga0207705_10051313 3300025909 Bacteria 2969
99 Ga0207705_10152968 3300025909 Bacteria 1729
100 Ga0207654_10088481 3300025911 Viruses 1882
101 Ga0207695_10002544 3300025913 Bacteria 26784
102 Ga0207695_10040129 3300025913 Bacteria 5023
103 Ga0207695_10081135 3300025913 Viruses 3283
104 Ga0207657_10015655 3300025919 Bacteria 7336
105 Ga0207657_10189150 3300025919 Bacteria 1662
106 Ga0207652_10023720 3300025921 Bacteria 5085
107 Ga0207694_10054995 3300025924 Bacteria 3089
108 Ga0207694_10174052 3300025924 Viruses 1744
109 Ga0207694_10259820 3300025924 Bacteria 1422
110 Ga0207650_10035359 3300025925 Viruses 3626
111 Ga0207659_10009400 3300025926 Bacteria 6106
112 Ga0207687_10092781 3300025927 Bacteria 2206
113 Ga0207690_10222603 3300025932 Bacteria 1444
114 Ga0207706_10165360 3300025933 Bacteria 1944
115 Ga0207686_10029230 3300025934 Bacteria 3249
116 Ga0207670_10000213 3300025936 Bacteria 38023
117 Ga0207669_10008112 3300025937 Viruses 4911
118 Ga0207704_10000414 3300025938 Bacteria 19320
119 Ga0207691_10000534 3300025940 Bacteria 37985
120 Ga0207691_10006837 3300025940 Bacteria 11004
121 Ga0207711_10000555 3300025941 Bacteria 38013
122 Ga0207667_10015309 3300025949 Bacteria 8720
123 Ga0207667_10078819 3300025949 Bacteria 3414
124 Ga0207651_10000100 3300025960 Bacteria 38020
125 Ga0207651_10000759 3300025960 Bacteria 13862
126 Ga0207712_10136854 3300025961 Bacteria 1874
127 Ga0207668_10180086 3300025972 Bacteria 1666
128 Ga0207703_10271309 3300026035 Bacteria 1537
129 Ga0207678_10225489 3300026067 Bacteria 1604
130 Ga0207674_10149783 3300026116 Bacteria 2290
131 Ga0207683_10000865 3300026121 Bacteria 27753
132 Ga0207683_10001139 3300026121 Bacteria 24164
133 Ga0207683_10010947 3300026121 Bacteria 7736
134 Ga0207683_10014367 3300026121 Bacteria 6745
135 Ga0268266_10000005 3300028379 Bacteria 1448194
136 Ga0268266_10000055 3300028379 Bacteria 291630
137 Ga0268266_10000793 3300028379 Bacteria 42062
138 Ga0268266_10000913 3300028379 Bacteria 38013
139 Ga0268266_10012500 3300028379 Bacteria 7338
140 Ga0268266_10018409 3300028379 Bacteria 5953
141 Ga0268266_10027972 3300028379 Bacteria 4794
142 Ga0268265_10000460 3300028380 Bacteria 43081
143 Ga0268265_10003102 3300028380 Bacteria 12125
144 Ga0307517_10004432 3300028786 Bacteria 21568
145 Ga0265338_10001537 3300028800 Bacteria 37269
146 Ga0265327_10000992 3300031251 Bacteria 40284
147 Ga0307513_10000506 3300031456 Bacteria 56167
148 Ga0307513_10001483 3300031456 Bacteria 33706
149 Ga0307513_10140447 3300031456 Bacteria 2343
150 Ga0373951_0000451 3300035091 Bacteria 11943
151 Ga0395899_0000562 3300037312 Bacteria 39678
152 Ga0395899_0003145 3300037312 Bacteria 13120
153 Ga0395899_0052920 3300037312 Bacteria 3007
154 Ga0395900_0000866 3300037418 Bacteria 39796
155 Ga0395900_0002941 3300037418 Bacteria 18560
156 Ga0395900_0005912 3300037418 Bacteria 12774
157 Ga0395900_0089775 3300037418 Bacteria 3158
158 Ga0395900_0113441 3300037418 Bacteria 2782
159 Ga0395900_0121638 3300037418 Bacteria 2678
160 Ga0395900_0269655 3300037418 Viruses 1697
161 Ga0395898_0001178 3300037466 Bacteria 39845
162 Ga0395898_0002336 3300037466 Bacteria 22637
163 Ga0395898_0002519 3300037466 Bacteria 21540
164 Ga0395898_0002859 3300037466 Bacteria 19704
165 Ga0395898_0005854 3300037466 Bacteria 13222
166 Ga0395898_0006111 3300037466 Bacteria 12910
167 Ga0395898_0058425 3300037466 Bacteria 3754
168 Ga0395898_0066860 3300037466 Bacteria 3481
169 Ga0395898_0323192 3300037466 Bacteria 1472
170 Ga0395905_0000817 3300037471 Viruses 40906
171 Ga0395905_0001945 3300037471 Bacteria 23687
172 Ga0395905_0006334 3300037471 Bacteria 11924
173 Ga0395905_0007820 3300037471 Bacteria 10596
174 Ga0395905_0047094 3300037471 Bacteria 4043
175 Ga0395905_0098218 3300037471 Bacteria 2750
176 Ga0395901_0000656 3300038443 Bacteria 39796
177 Ga0395901_0009889 3300038443 Bacteria 9668
178 Ga0395901_0021504 3300038443 Bacteria 6611
179 Ga0395901_0025053 3300038443 Bacteria 6124
180 Ga0436365_1410191 3300039437 Bacteria 34522
181 Ga0451845_0480276 3300041501 Viruses 1777
182 Ga0451576_0128227 3300045051 Bacteria 2644
183 Ga0466958_0003290 3300045836 Bacteria 8362
184 Ga0495629_0048677 3300046459 Bacteria 2972
185 Ga0495605_0000409 3300046474 Bacteria 39154
186 Ga0495664_0000126 3300046477 Bacteria 38783
187 Ga0495584_0000392 3300046491 Bacteria 30148
188 Ga0495607_0001082 3300046501 Bacteria 24873
189 Ga0495616_0000308 3300046513 Bacteria 39094
190 Ga0495642_0061263 3300046528 Bacteria 1561
191 Ga0495597_0002068 3300046542 Bacteria 13384
192 Ga0495645_0000263 3300046543 Bacteria 38772
193 Ga0495633_0079797 3300046558 Bacteria 1524
194 Ga0495625_0001489 3300046660 Bacteria 28190
195 Ga0495625_0019098 3300046660 Bacteria 5332
196 Ga0495613_0019374 3300046689 Bacteria 5072
197 Ga0495670_0000098 3300046691 Bacteria 37911
198 Ga0495674_0001313 3300047319 Bacteria 24196
199 Ga0495677_0000114 3300047445 Bacteria 39048
200 Ga0495626_0003740 3300048091 Bacteria 9605
201 Ga0496106_0130355 3300048909 Bacteria 1971
202 Ga0496115_0005304 3300048918 Bacteria 9373
203 Ga0496115_0090009 3300048918 Viruses 2507
204 Ga0496117_0024096 3300048920 Viruses 4826
205 Ga0496118_0005949 3300048921 Viruses 13623
206 Ga0495678_004075 3300049459 Bacteria 8666
207 Ga0501032_0033733 3300049569 Bacteria 3506
208 Ga0501034_0088733 3300049571 Bacteria 3090
209 Ga0501034_0377955 3300049571 Bacteria 1342
210 Ga0501036_0084808 3300049572 Viruses 2678
211 Ga0501037_0002271 3300049573 Bacteria 13882
212 Ga0501038_0003305 3300049574 Bacteria 15030
213 Ga0501039_0075302 3300049575 Bacteria 2624
214 Ga0501047_0073924 3300049581 Bacteria 3282
215 Ga0501257_000165 3300049686 Bacteria 13315
216 Ga0500572_000243 3300053111 Bacteria 19439
217 Ga0500559_0000157 3300053136 Bacteria 53554
218 Ga0500573_0000002 3300053140 Bacteria 407088
219 Ga0500636_0076759 3300053177 Viruses 1931
220 Ga0500552_001400 3300053733 Bacteria 2305
221 rootL2_10122018
222 JGI24748J21848_1000102
223 JGI24749J21850_1000011
224 JGI24034J26672_10000061
225 JGI25165J46597_1000003
226 rootH1_10013257
227 Ga0070658_10058891
228 Ga0070683_100161984
229 Ga0070670_100025242
230 Ga0070682_100055355
231 Ga0068868_100021455
232 Ga0070660_100021975
233 Ga0070689_100000182
234 Ga0070668_100000273
235 Ga0070668_100002158
236 Ga0070668_100117161
237 Ga0070673_100000106
238 Ga0070673_100006127
239 Ga0070688_100000148
240 Ga0070659_100070283
241 Ga0070667_100072028
242 Ga0070701_10007804
243 Ga0070678_100000171
244 Ga0070678_100000288
245 Ga0070678_100004974
246 Ga0070662_100117042
247 Ga0070681_10081459
248 Ga0070685_10000217
249 Ga0070679_100011489
250 Ga0070679_100064983
251 Ga0070672_100000153
252 Ga0070672_100002656
253 Ga0070665_100000015
254 Ga0070665_100000774
255 Ga0070665_100000908
256 Ga0070665_100000965
257 Ga0070665_100008223
258 Ga0070665_100012107
259 Ga0070665_100034800
260 Ga0068855_100027623
261 Ga0068855_100116897
262 Ga0068856_100129337
263 Ga0070702_100001330
264 Ga0068859_100000531
265 Ga0068863_100120503
266 Ga0068862_100000486
267 Ga0068862_100001727
268 Ga0097621_100000617
269 Ga0097621_100001106
270 Ga0097621_100012217
271 Ga0097621_100164643
272 Ga0068871_100000865
273 Ga0068871_100001502
274 Ga0068871_100006343
275 Ga0068871_100015399
276 Ga0068871_100104739
277 Ga0075430_100094132
278 Ga0068865_100001343
279 Ga0068865_100004233
280 Ga0097620_100000531
281 Ga0105240_10019631
282 Ga0105240_10049123
283 Ga0105240_10056123
284 Ga0105247_10000379
285 Ga0105241_10294648
286 Ga0105242_10037223
287 Ga0105248_10000753
288 Ga0105248_10093574
289 Ga0105238_10014521
290 Ga0105238_10085772
291 Ga0105238_10104168
292 Ga0105238_10172849
293 Ga0105239_10269190
294 Ga0105239_10284790
295 Ga0157369_10000501
296 Ga0157374_10032383
297 Ga0163162_10001430
298 Ga0157372_10215993
299 Ga0157375_10001233
300 Ga0157375_10005352
301 Ga0163163_10016832
302 Ga0157379_10000040
303 Ga0157379_10061536
304 Ga0157376_10000516
305 Ga0157376_10005054
306 Ga0157376_10096734
307 Ga0163161_10009231
308 Ga0163161_10155813
309 Ga0163161_10192645
310 Ga0206353_11652894
311 Ga0213876_10008775
312 Ga0209233_1000015
313 Ga0209256_1003034
314 Ga0209257_1002222
315 Ga0207656_10022417
316 Ga0207710_10002640
317 Ga0207705_10051313
318 Ga0207705_10152968
319 Ga0207654_10088481
320 Ga0207695_10002544
321 Ga0207695_10040129
322 Ga0207695_10081135
323 Ga0207657_10015655
324 Ga0207657_10189150
325 Ga0207652_10023720
326 Ga0207694_10054995
327 Ga0207694_10174052
328 Ga0207694_10259820
329 Ga0207650_10035359
330 Ga0207659_10009400
331 Ga0207687_10092781
332 Ga0207690_10222603
333 Ga0207706_10165360
334 Ga0207686_10029230
335 Ga0207670_10000213
336 Ga0207669_10008112
337 Ga0207704_10000414
338 Ga0207691_10000534
339 Ga0207691_10006837
340 Ga0207711_10000555
341 Ga0207667_10015309
342 Ga0207667_10078819
343 Ga0207651_10000100
344 Ga0207651_10000759
345 Ga0207712_10136854
346 Ga0207668_10180086
347 Ga0207703_10271309
348 Ga0207678_10225489
349 Ga0207674_10149783
350 Ga0207683_10000865
351 Ga0207683_10001139
352 Ga0207683_10010947
353 Ga0207683_10014367
354 Ga0268266_10000005
355 Ga0268266_10000055
356 Ga0268266_10000793
357 Ga0268266_10000913
358 Ga0268266_10012500
359 Ga0268266_10018409
360 Ga0268266_10027972
361 Ga0268265_10000460
362 Ga0268265_10003102
363 Ga0307517_10004432
364 Ga0265338_10001537
365 Ga0265327_10000992
366 Ga0307513_10000506
367 Ga0307513_10001483
368 Ga0307513_10140447
369 Ga0373951_0000451
370 Ga0395899_0000562
371 Ga0395899_0003145
372 Ga0395899_0052920
373 Ga0395900_0000866
374 Ga0395900_0002941
375 Ga0395900_0005912
376 Ga0395900_0089775
377 Ga0395900_0113441
378 Ga0395900_0121638
379 Ga0395900_0269655
380 Ga0395898_0001178
381 Ga0395898_0002336
382 Ga0395898_0002519
383 Ga0395898_0002859
384 Ga0395898_0005854
385 Ga0395898_0006111
386 Ga0395898_0058425
387 Ga0395898_0066860
388 Ga0395898_0323192
389 Ga0395905_0000817
390 Ga0395905_0001945
391 Ga0395905_0006334
392 Ga0395905_0007820
393 Ga0395905_0047094
394 Ga0395905_0098218
395 Ga0395901_0000656
396 Ga0395901_0009889
397 Ga0395901_0021504
398 Ga0395901_0025053
399 Ga0436365_1410191
400 Ga0451845_0480276
401 Ga0451576_0128227
402 Ga0466958_0003290
403 Ga0495629_0048677
404 Ga0495605_0000409
405 Ga0495664_0000126
406 Ga0495584_0000392
407 Ga0495607_0001082
408 Ga0495616_0000308
409 Ga0495642_0061263
410 Ga0495597_0002068
411 Ga0495645_0000263
412 Ga0495633_0079797
413 Ga0495625_0001489
414 Ga0495625_0019098
415 Ga0495613_0019374
416 Ga0495670_0000098
417 Ga0495674_0001313
418 Ga0495677_0000114
419 Ga0495626_0003740
420 Ga0496106_0130355
421 Ga0496115_0005304
422 Ga0496115_0090009
423 Ga0496117_0024096
424 Ga0496118_0005949
425 Ga0495678_004075
426 Ga0501032_0033733
427 Ga0501034_0088733
428 Ga0501034_0377955
429 Ga0501036_0084808
430 Ga0501037_0002271
431 Ga0501038_0003305
432 Ga0501039_0075302
433 Ga0501047_0073924
434 Ga0501257_000165
435 Ga0500572_000243
436 Ga0500559_0000157
437 Ga0500573_0000002
438 Ga0500636_0076759
439 Ga0500552_001400

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11651

P22_CoatProtein

P22 coat protein - gene protein 5

1

403

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
8i1v-assembly1.cif.gz_E the asymmetric unit of p22 procapsid 0.7703 12 402
8i1v-assembly1.cif.gz_B the asymmetric unit of p22 procapsid 0.7653 12 402
8i1v-assembly1.cif.gz_A the asymmetric unit of p22 procapsid 0.7565 12 402
5l35-assembly1.cif.gz_A cryo-em structure of bacteriophage sf6 at 2.9 angstrom resolution 0.7497 24 403
8i1v-assembly1.cif.gz_E the asymmetric unit of p22 procapsid 0.7479 12 402
ID Description Score Start End Superfamily
af_Q9JME5_948_1082_3.30.310.10 Alpha Beta;2-Layer Sandwich;TATA-Binding Protein;TATA-Binding Protein 0.6 341 386 3.30.310.10
af_O86374_374_456_3.30.310.50 Alpha Beta;2-Layer Sandwich;TATA-Binding Protein;Alpha-D-phosphohexomutase, C-terminal domain 0.5668 363 384 3.30.310.50
af_Q54HL0_780_895_3.30.310.10 Alpha Beta;2-Layer Sandwich;TATA-Binding Protein;TATA-Binding Protein 0.5561 346 388 3.30.310.10
af_O74429_50_576_1.20.58.340 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1;Magnesium transport protein CorA, transmembrane region 0.5554 364 389 1.20.58.340
af_Q22498_753_870_3.30.310.10 Alpha Beta;2-Layer Sandwich;TATA-Binding Protein;TATA-Binding Protein 0.5389 341 388 3.30.310.10
ID Description Score Start End GO Terms
AF-A0A4R6ZUP7-F1-model_v4 deleted 0.9243 1 400
AF-A0A4R6ZUP7-F1-model_v4 deleted 0.9158 1 400
AF-A0A7Y5VIB2-F1-model_v4 P22 coat-protein 5 family protein 0.912 3 403
AF-A0A255HIH2-F1-model_v4 Uncharacterized protein 0.9119 4 401
AF-A0A317GWX8-F1-model_v4 Major capsid protein Gp5 0.9088 1 403

Map