F334597

General Info

Members Datasets Scaffolds Average Seq Length
222 159 217 436

Family's Representative Sequence

Representative Sequence 3300028653|Ga0265323_10000092|Ga0265323_100000923
Length 498
Sequence MHSECTSLADVSPRPDPTKFRVMHHIPRLCRSRSSLPAIVGLCLMLGQPAARLRAADEPPTEWIDPDTGHRVVRLSRDPGTASLYFHQNAYTADGKKLIVTTPDRGIATIDLETRAIDPVVPGPVGVLFTGRKTGDIYYMKRASRDVVKADGTRDVVGETTVYATNPVTRKTRTIATLAPGRMVSSLNADETLLLGAYVEGVEQWPSGAGRSGRGPGDRMPGADPRFPQAAARATGPDGQPLDFATAKESGLHDHLAAIRAGPPHVLFTVNTATGEMKDVYREREWLNHLQFSPTDPTLILFCHEGPWHEVDRVWTVRTDGTGLTKIHARTMNMEIAGHEFFSSDGATIWYDLQTPRGEDFWVAGYEIATGRRTGYHLQRNEWSVHFNVSPDGSLFAGDGGDSEMVAHAPDGKWIYLFRPEPIPNVAGFKNPQSAGLIDAGRFKAERLVNMGKHDYRLEPNVTFSPDMKWIIFRSNMHGATQVYAVEIARSSAAATPR

Samples

Sample ID Description Type Environment
1 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
2 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
3 2643221583 Caulobacter sp. Root655 Isolate Unclassified
4 2818991435 Caulobacter henricii 536 Isolate Unclassified
5 2818991454 Caulobacter rhizosphaerae 3260 Isolate Rhizosphere
6 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
7 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
8 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
9 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
10 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
11 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
12 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
13 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
14 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
15 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
51 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
52 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
55 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
78 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
81 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
82 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
83 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
84 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
85 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
86 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
87 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
88 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
89 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
90 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
91 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
92 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
93 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
94 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
95 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
96 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
97 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
98 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
99 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
100 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
101 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
102 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
103 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
104 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
105 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
106 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
107 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
108 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
109 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
110 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
111 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
112 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
113 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
114 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
115 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
116 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
117 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
118 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
119 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
120 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
121 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
122 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
123 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
124 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
125 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
126 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
127 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
128 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
129 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
130 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
131 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
132 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
133 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
134 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
135 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
136 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
137 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
138 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
139 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
140 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
141 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
148 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
149 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
150 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
151 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
152 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
153 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
154 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
155 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
156 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
157 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
158 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
159 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.75
Metatranscriptomes 0
Isolates 2.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.71
Nodule 0
Rhizoplane 0.9
Rhizosphere 82.88
Stem 0
Stem Tuber 0
Unclassified 4.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10000733 3300001989 Bacteria 11902
2 JGI24737J22298_10002196 3300001990 Bacteria 6958
3 JGI24735J21928_10002052 3300002067 Bacteria 7093
4 JGI24738J21930_10001097 3300002075 Bacteria 7650
5 JGI25165J46597_1000050 3300003214 Bacteria 242776
6 Ga0055542_1000037 3300003762 Bacteria 225640
7 Ga0055542_1002317 3300003762 Bacteria 6547
8 Ga0055529_1000042 3300003763 Bacteria 225663
9 Ga0065165_1000906 3300005262 Bacteria 38225
10 Ga0070676_10058171 3300005328 Bacteria 2290
11 Ga0070683_100000034 3300005329 Bacteria 131120
12 Ga0070670_100030215 3300005331 Bacteria 4666
13 Ga0070688_100138522 3300005365 Bacteria 1650
14 Ga0070659_100056428 3300005366 Bacteria 3097
15 Ga0070694_100003118 3300005444 Bacteria 9874
16 Ga0070662_100004533 3300005457 Bacteria 8801
17 Ga0070662_100046528 3300005457 Bacteria 3117
18 Ga0070662_100055646 3300005457 Bacteria 2870
19 Ga0070681_10083135 3300005458 Bacteria 3156
20 Ga0070684_100000024 3300005535 Bacteria 124195
21 Ga0070665_100265559 3300005548 Bacteria 1718
22 Ga0068855_100141256 3300005563 Bacteria 2745
23 Ga0068856_100000311 3300005614 Bacteria 53369
24 Ga0068856_100241288 3300005614 Unclassified 1822
25 Ga0068856_100373622 3300005614 Bacteria 1444
26 Ga0068859_100031521 3300005617 Bacteria 5324
27 Ga0068863_100003153 3300005841 Bacteria 16278
28 Ga0068858_100002252 3300005842 Bacteria 19506
29 Ga0068858_100004611 3300005842 Bacteria 13487
30 Ga0068860_100006036 3300005843 Bacteria 12192
31 Ga0068860_100021421 3300005843 Bacteria 6258
32 Ga0081455_10001793 3300005937 Bacteria 25929
33 Ga0081455_10072132 3300005937 Bacteria 2860
34 Ga0081539_10009608 3300005985 Bacteria 8033
35 Ga0075363_100069221 3300006048 Bacteria 1914
36 Ga0075370_10016710 3300006353 Bacteria 3951
37 Ga0097620_100031521 3300006931 Bacteria 5324
38 Ga0105240_10002125 3300009093 Bacteria 32374
39 Ga0105240_10048091 3300009093 Bacteria 5393
40 Ga0105240_10117893 3300009093 Bacteria 3200
41 Ga0105240_10169269 3300009093 Bacteria 2589
42 Ga0111539_10011172 3300009094 Bacteria 11288
43 Ga0105247_10001905 3300009101 Bacteria 14567
44 Ga0114129_10021312 3300009147 Bacteria 9201
45 Ga0114129_10030598 3300009147 Bacteria 7616
46 Ga0105248_10444895 3300009177 Bacteria 1460
47 Ga0105237_10061561 3300009545 Bacteria 3752
48 Ga0105237_10259685 3300009545 Bacteria 1740
49 Ga0105238_10013009 3300009551 Bacteria 8399
50 Ga0105238_10031336 3300009551 Bacteria 5413
51 Ga0105239_10103778 3300010375 Unclassified 3147
52 Ga0157326_1001509 3300012513 Bacteria 2564
53 Ga0157373_10029116 3300013100 Bacteria 3981
54 Ga0157369_10006472 3300013105 Bacteria 13574
55 Ga0157369_10135475 3300013105 Bacteria 2608
56 Ga0157369_10290588 3300013105 Bacteria 1702
57 Ga0157372_10021845 3300013307 Bacteria 6918
58 Ga0157372_10187015 3300013307 Bacteria 2398
59 Ga0163163_10023536 3300014325 Bacteria 5847
60 Ga0163163_10063715 3300014325 Unclassified 3656
61 Ga0157379_10048221 3300014968 Unclassified 3802
62 Ga0209563_100116 3300025230 Bacteria 134661
63 Ga0207427_101696 3300025231 Bacteria 7320
64 Ga0209026_1002398 3300025250 Bacteria 7069
65 Ga0209677_106842 3300025253 Bacteria 2593
66 Ga0209148_1000026 3300025254 Bacteria 629213
67 Ga0209148_1000208 3300025254 Bacteria 103781
68 Ga0209233_1000041 3300025261 Bacteria 515463
69 Ga0209455_1000005 3300025272 Bacteria 1416756
70 Ga0209564_1000928 3300025295 Bacteria 38079
71 Ga0209257_1008590 3300025304 Bacteria 5748
72 Ga0207710_10010875 3300025900 Bacteria 3832
73 Ga0207647_10000375 3300025904 Bacteria 36351
74 Ga0207647_10012153 3300025904 Bacteria 6007
75 Ga0207645_10008073 3300025907 Bacteria 7384
76 Ga0207695_10001924 3300025913 Bacteria 32293
77 Ga0207695_10082623 3300025913 Bacteria 3246
78 Ga0207695_10148315 3300025913 Bacteria 2287
79 Ga0207695_10231362 3300025913 Bacteria 1752
80 Ga0207671_10019812 3300025914 Bacteria 5135
81 Ga0207652_10259777 3300025921 Bacteria 1567
82 Ga0207694_10007590 3300025924 Bacteria 8222
83 Ga0207694_10056213 3300025924 Bacteria 3056
84 Ga0207650_10143693 3300025925 Bacteria 1878
85 Ga0207690_10104204 3300025932 Bacteria 2032
86 Ga0207706_10011573 3300025933 Bacteria 8033
87 Ga0207706_10015025 3300025933 Bacteria 7009
88 Ga0207706_10022316 3300025933 Bacteria 5679
89 Ga0207706_10145048 3300025933 Bacteria 2088
90 Ga0207669_10000815 3300025937 Bacteria 13373
91 Ga0207661_10000039 3300025944 Bacteria 131135
92 Ga0207667_10094682 3300025949 Bacteria 3083
93 Ga0207712_10004138 3300025961 Bacteria 9160
94 Ga0207658_10019191 3300025986 Bacteria 4728
95 Ga0207703_10001355 3300026035 Bacteria 22437
96 Ga0207703_10093968 3300026035 Bacteria 2527
97 Ga0207702_10000274 3300026078 Bacteria 59342
98 Ga0207641_10000197 3300026088 Bacteria 81805
99 Ga0207675_100269675 3300026118 Bacteria 1651
100 Ga0207428_10018427 3300027907 Bacteria 5963
101 Ga0268266_10167616 3300028379 Bacteria 1991
102 Ga0268264_10000025 3300028381 Bacteria 468619
103 Ga0268264_10004091 3300028381 Bacteria 12487
104 Ga0265337_1004175 3300028556 Bacteria 6058
105 Ga0265323_10000092 3300028653 Bacteria 51020
106 Ga0265323_10000807 3300028653 Bacteria 16828
107 Ga0265322_10004774 3300028654 Bacteria 4018
108 Ga0307517_10010248 3300028786 Bacteria 13148
109 Ga0307517_10119087 3300028786 Bacteria 1961
110 Ga0265338_10000129 3300028800 Bacteria 138608
111 Ga0265338_10000483 3300028800 Bacteria 71199
112 Ga0265338_10001418 3300028800 Bacteria 39001
113 Ga0265338_10006028 3300028800 Bacteria 15573
114 Ga0265338_10016462 3300028800 Bacteria 8045
115 Ga0265338_10085678 3300028800 Unclassified 2625
116 Ga0307511_10000028 3300030521 Bacteria 109328
117 Ga0265320_10000266 3300031240 Bacteria 43303
118 Ga0265320_10002818 3300031240 Bacteria 11962
119 Ga0265316_10006259 3300031344 Bacteria 11406
120 Ga0265316_10011343 3300031344 Bacteria 8048
121 Ga0265316_10032336 3300031344 Bacteria 4270
122 Ga0265316_10065608 3300031344 Bacteria 2811
123 Ga0265316_10071709 3300031344 Bacteria 2670
124 Ga0265316_10126634 3300031344 Bacteria 1925
125 Ga0265314_10020314 3300031711 Bacteria 5127
126 Ga0265314_10120355 3300031711 Bacteria 1654
127 Ga0265342_10010490 3300031712 Bacteria 6421
128 Ga0373928_0000461 3300035084 Bacteria 8033
129 Ga0373944_0000155 3300035089 Bacteria 13498
130 Ga0373949_0001193 3300035090 Bacteria 7709
131 Ga0373932_0000001 3300035112 Bacteria 1459067
132 Ga0373936_0007797 3300035113 Bacteria 4022
133 Ga0373962_0000533 3300035242 Bacteria 8524
134 Ga0373931_0000008 3300035691 Bacteria 362269
135 Ga0373927_0002505 3300035695 Bacteria 13406
136 Ga0373927_0136984 3300035695 Bacteria 1600
137 Ga0373947_0005284 3300035725 Bacteria 7550
138 Ga0373925_0000907 3300037068 Bacteria 27030
139 Ga0395899_0003340 3300037312 Bacteria 12722
140 Ga0395900_0036665 3300037418 Bacteria 5055
141 Ga0395900_0170113 3300037418 Bacteria 2219
142 Ga0439448_0003526 3300042005 Bacteria 4340
143 Ga0439448_0005501 3300042005 Bacteria 3613
144 Ga0439455_0000532 3300042012 Bacteria 5346
145 Ga0439458_0003503 3300042157 Bacteria 3665
146 Ga0439458_0006810 3300042157 Bacteria 2545
147 Ga0451577_0076463 3300042876 Bacteria 2985
148 Ga0453683_0102233 3300044673 Bacteria 1800
149 Ga0495592_0047837 3300046454 Bacteria 3184
150 Ga0495650_0000192 3300046471 Bacteria 131943
151 Ga0495662_0012833 3300046476 Bacteria 4083
152 Ga0495664_0001301 3300046477 Bacteria 13082
153 Ga0495585_0008311 3300046492 Bacteria 6298
154 Ga0495585_0023574 3300046492 Bacteria 3532
155 Ga0495583_0000535 3300046506 Bacteria 53748
156 Ga0495583_0019247 3300046506 Bacteria 3568
157 Ga0495583_0020791 3300046506 Bacteria 3389
158 Ga0495583_0091412 3300046506 Bacteria 1309
159 Ga0495606_0007523 3300046507 Bacteria 9718
160 Ga0495618_0144817 3300046514 Bacteria 1519
161 Ga0495631_0029972 3300046518 Bacteria 2471
162 Ga0495643_0000570 3300046522 Bacteria 45556
163 Ga0495648_0000069 3300046524 Bacteria 136934
164 Ga0495648_0023343 3300046524 Bacteria 4238
165 Ga0495663_0000451 3300046525 Bacteria 15050
166 Ga0495586_0087000 3300046535 Unclassified 1723
167 Ga0495645_0002570 3300046543 Bacteria 12337
168 Ga0495633_0002505 3300046558 Bacteria 12923
169 Ga0495667_0053310 3300046559 Bacteria 2664
170 Ga0495668_0000109 3300046616 Bacteria 132453
171 Ga0495611_0083718 3300046648 Bacteria 1470
172 Ga0495625_0000341 3300046660 Bacteria 71410
173 Ga0495625_0003209 3300046660 Bacteria 16600
174 Ga0495635_0080130 3300046663 Bacteria 2235
175 Ga0495599_0002369 3300046678 Bacteria 10951
176 Ga0495613_0048830 3300046689 Bacteria 3124
177 Ga0495670_0000821 3300046691 Bacteria 14974
178 Ga0495600_0002395 3300046809 Bacteria 10742
179 Ga0495600_0026383 3300046809 Bacteria 3750
180 Ga0495660_0029645 3300046810 Bacteria 3086
181 Ga0495660_0064677 3300046810 Bacteria 1954
182 Ga0495687_000061 3300047443 Bacteria 176412
183 Ga0495687_000089 3300047443 Bacteria 141448
184 Ga0495675_0093351 3300047444 Bacteria 1888
185 Ga0495681_0017404 3300047470 Bacteria 3990
186 Ga0495684_0148686 3300047471 Unclassified 1752
187 Ga0495686_0001366 3300047472 Bacteria 27222
188 Ga0495686_0002697 3300047472 Bacteria 16279
189 Ga0495686_0097058 3300047472 Bacteria 1782
190 Ga0495686_0103653 3300047472 Bacteria 1714
191 Ga0496109_0005322 3300048912 Bacteria 10756
192 Ga0496112_0450472 3300048915 Bacteria 1225
193 Ga0496119_0021321 3300048922 Bacteria 4687
194 Ga0496125_0002527 3300048928 Bacteria 23604
195 Ga0501033_0023676 3300049570 Bacteria 4631
196 Ga0501037_0032285 3300049573 Bacteria 3867
197 Ga0501046_0001705 3300049580 Bacteria 21000
198 Ga0501047_0173214 3300049581 Bacteria 2027
199 Ga0501035_0121130 3300049822 Bacteria 2287
200 Ga0501044_0032735 3300049823 Bacteria 5464
201 Ga0501044_0050965 3300049823 Bacteria 4270
202 nmdc:mga03n38_60516_c1 3300050490 Bacteria 1722
203 nmdc:mga07m45_15349_c1 3300050496 Bacteria 4090
204 nmdc:mga05p37_442899_c1 3300050507 Bacteria 1506
205 nmdc:mga05p37_7165_c1 3300050507 Bacteria 13146
206 nmdc:mga08y16_1457_c1 3300050511 Bacteria 23720
207 nmdc:mga0n895_36267_c1 3300050512 Bacteria 4761
208 nmdc:mga0rr50_73422_c1 3300050513 Bacteria 2615
209 Ga0500610_0000160 3300053079 Bacteria 20065
210 Ga0500595_000463 3300053119 Bacteria 25267
211 Ga0500642_0000345 3300053130 Bacteria 15780
212 Ga0500559_0010533 3300053136 Bacteria 3967
213 Ga0500559_0050414 3300053136 Bacteria 1836
214 Ga0500559_0110610 3300053136 Bacteria 1272
215 Ga0500636_0000388 3300053177 Bacteria 24256
216 Ga0500645_000008 3300053730 Bacteria 212254
217 Ga0501082_0003118 3300060353 Bacteria 14451

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300009093 Ga0105240_10002125 Ga0105240_1000212521 367
2 3300009094 Ga0111539_10011172 Ga0111539_100111721 369
3 3300013307 Ga0157372_10021845 Ga0157372_100218456 372
4 3300048912 Ga0496109_0005322 Ga0496109_0005322_975_2168 375
5 3300050512 nmdc:mga0n895_36267_c1 nmdc:mga0n895_36267_c1_215_1414 375
6 3300042876 Ga0451577_0076463 Ga0451577_0076463_708_1934 376
7 3300044673 Ga0453683_0102233 Ga0453683_0102233_438_1664 376
8 3300053136 Ga0500559_0110610 Ga0500559_0110610_117_1250 376
9 3300005937 Ga0081455_10072132 Ga0081455_100721322 377
10 3300009147 Ga0114129_10021312 Ga0114129_100213123 377
11 3300050507 nmdc:mga05p37_442899_c1 nmdc:mga05p37_442899_c1_11_1237 377
12 3300050513 nmdc:mga0rr50_73422_c1 nmdc:mga0rr50_73422_c1_79_1305 377
13 3300005937 Ga0081455_10001793 Ga0081455_1000179312 378
14 3300060353 Ga0501082_0003118 Ga0501082_0003118_9480_10727 378
15 3300027907 Ga0207428_10018427 Ga0207428_100184272 379
16 3300050511 nmdc:mga08y16_1457_c1 nmdc:mga08y16_1457_c1_8510_9736 379
17 3300009147 Ga0114129_10030598 Ga0114129_100305983 382
18 3300050507 nmdc:mga05p37_7165_c1 nmdc:mga05p37_7165_c1_10309_11544 382
19 3300048915 Ga0496112_0450472 Ga0496112_0450472_16_1182 384
20 3300028800 Ga0265338_10001418 Ga0265338_1000141818 387
21 3300028800 Ga0265338_10000129 Ga0265338_1000012984 390
22 3300046689 Ga0495613_0048830 Ga0495613_0048830_1783_3006 390
23 3300028800 Ga0265338_10000483 Ga0265338_100004835 393
24 3300046506 Ga0495583_0091412 Ga0495583_0091412_20_1234 394
25 3300014968 Ga0157379_10048221 Ga0157379_100482214 395
26 3300005614 Ga0068856_100000311 Ga0068856_1000003111 399
27 3300026078 Ga0207702_10000274 Ga0207702_1000027410 399
28 3300025913 Ga0207695_10001924 Ga0207695_1000192420 402
29 3300035695 Ga0373927_0136984 Ga0373927_0136984_14_1327 402
30 3300049581 Ga0501047_0173214 Ga0501047_0173214_377_1720 402
31 3300049823 Ga0501044_0050965 Ga0501044_0050965_367_1710 402
32 3300013307 Ga0157372_10187015 Ga0157372_101870151 403
33 3300031240 Ga0265320_10000266 Ga0265320_100002662 403
34 3300028653 Ga0265323_10000807 Ga0265323_100008077 406
35 3300028800 Ga0265338_10006028 Ga0265338_100060282 406
36 3300031344 Ga0265316_10065608 Ga0265316_100656082 406
37 3300046809 Ga0495600_0026383 Ga0495600_0026383_338_1612 406
38 3300005614 Ga0068856_100241288 Ga0068856_1002412882 407
39 3300028556 Ga0265337_1004175 Ga0265337_10041753 407
40 3300031711 Ga0265314_10020314 Ga0265314_100203146 407
41 3300005365 Ga0070688_100138522 Ga0070688_1001385222 408
42 3300005458 Ga0070681_10083135 Ga0070681_100831352 408
43 3300005548 Ga0070665_100265559 Ga0070665_1002655592 408
44 3300005563 Ga0068855_100141256 Ga0068855_1001412562 408
45 3300005614 Ga0068856_100373622 Ga0068856_1003736221 408
46 3300005617 Ga0068859_100031521 Ga0068859_1000315212 408
47 3300005841 Ga0068863_100003153 Ga0068863_10000315312 408
48 3300005842 Ga0068858_100002252 Ga0068858_1000022523 408
49 3300005843 Ga0068860_100006036 Ga0068860_1000060365 408
50 3300006931 Ga0097620_100031521 Ga0097620_1000315215 408
51 3300009093 Ga0105240_10048091 Ga0105240_100480912 408
52 3300009093 Ga0105240_10117893 Ga0105240_101178932 408
53 3300009177 Ga0105248_10444895 Ga0105248_104448952 408
54 3300009545 Ga0105237_10061561 Ga0105237_100615613 408
55 3300009545 Ga0105237_10259685 Ga0105237_102596852 408
56 3300009551 Ga0105238_10013009 Ga0105238_1001300910 408
57 3300009551 Ga0105238_10031336 Ga0105238_100313363 408
58 3300010375 Ga0105239_10103778 Ga0105239_101037782 408
59 3300013105 Ga0157369_10135475 Ga0157369_101354752 408
60 3300025913 Ga0207695_10082623 Ga0207695_100826233 408
61 3300025913 Ga0207695_10148315 Ga0207695_101483152 408
62 3300025914 Ga0207671_10019812 Ga0207671_100198125 408
63 3300025921 Ga0207652_10259777 Ga0207652_102597771 408
64 3300025924 Ga0207694_10007590 Ga0207694_100075905 408
65 3300025924 Ga0207694_10056213 Ga0207694_100562133 408
66 3300025925 Ga0207650_10143693 Ga0207650_101436932 408
67 3300026035 Ga0207703_10001355 Ga0207703_1000135514 408
68 3300026088 Ga0207641_10000197 Ga0207641_1000019753 408
69 3300028379 Ga0268266_10167616 Ga0268266_101676162 408
70 3300028381 Ga0268264_10000025 Ga0268264_10000025227 408
71 3300028800 Ga0265338_10016462 Ga0265338_100164623 408
72 3300028800 Ga0265338_10085678 Ga0265338_100856782 408
73 3300030521 Ga0307511_10000028 Ga0307511_1000002832 408
74 3300031711 Ga0265314_10120355 Ga0265314_101203551 408
75 3300035084 Ga0373928_0000461 Ga0373928_0000461_2286_3590 408
76 3300035089 Ga0373944_0000155 Ga0373944_0000155_6297_7601 408
77 3300035090 Ga0373949_0001193 Ga0373949_0001193_4555_5859 408
78 3300035112 Ga0373932_0000001 Ga0373932_0000001_810709_812013 408
79 3300035113 Ga0373936_0007797 Ga0373936_0007797_635_1891 408
80 3300035242 Ga0373962_0000533 Ga0373962_0000533_5713_7017 408
81 3300035691 Ga0373931_0000008 Ga0373931_0000008_277284_278588 408
82 3300035695 Ga0373927_0002505 Ga0373927_0002505_6167_7471 408
83 3300035725 Ga0373947_0005284 Ga0373947_0005284_1419_2723 408
84 3300037068 Ga0373925_0000907 Ga0373925_0000907_18259_19563 408
85 3300046559 Ga0495667_0053310 Ga0495667_0053310_614_1927 408
86 3300047444 Ga0495675_0093351 Ga0495675_0093351_176_1489 408
87 3300048928 Ga0496125_0002527 Ga0496125_0002527_13456_14712 408
88 3300042012 Ga0439455_0000532 Ga0439455_0000532_3766_5073 410
89 3300025949 Ga0207667_10094682 Ga0207667_100946822 412
90 3300047472 Ga0495686_0001366 Ga0495686_0001366_24213_25541 412
91 3300048922 Ga0496119_0021321 Ga0496119_0021321_1673_3001 412
92 3300005329 Ga0070683_100000034 Ga0070683_10000003458 413
93 3300005535 Ga0070684_100000024 Ga0070684_10000002464 413
94 3300025944 Ga0207661_10000039 Ga0207661_1000003961 413
95 3300005843 Ga0068860_100021421 Ga0068860_1000214212 415
96 3300025900 Ga0207710_10010875 Ga0207710_100108752 415
97 3300025961 Ga0207712_10004138 Ga0207712_100041382 415
98 3300026118 Ga0207675_100269675 Ga0207675_1002696751 415
99 3300028381 Ga0268264_10004091 Ga0268264_100040913 415
100 3300031240 Ga0265320_10002818 Ga0265320_100028186 416
101 iso_pu_bacteria 2524023250 2524612333 416
102 3300009101 Ga0105247_10001905 Ga0105247_100019053 417
103 3300046514 Ga0495618_0144817 Ga0495618_0144817_159_1484 417
104 3300046535 Ga0495586_0087000 Ga0495586_0087000_360_1685 417
105 3300047471 Ga0495684_0148686 Ga0495684_0148686_208_1533 417
106 iso_pu_bacteria 2643221583 2643926201 417
107 iso_pu_bacteria 2818991435 2819539558 417
108 iso_pu_bacteria 2818991454 2819648766 417
109 3300005444 Ga0070694_100003118 Ga0070694_1000031182 418
110 3300046810 Ga0495660_0064677 Ga0495660_0064677_126_1448 418
111 3300005262 Ga0065165_1000906 Ga0065165_100090618 419
112 3300025295 Ga0209564_1000928 Ga0209564_10009287 419
113 3300046492 Ga0495585_0023574 Ga0495585_0023574_946_2271 419
114 iso_pu_bacteria 2643221545 2643748230 419
115 3300005366 Ga0070659_100056428 Ga0070659_1000564282 420
116 3300005457 Ga0070662_100055646 Ga0070662_1000556463 420
117 3300006353 Ga0075370_10016710 Ga0075370_100167103 420
118 3300025932 Ga0207690_10104204 Ga0207690_101042042 420
119 3300025933 Ga0207706_10011573 Ga0207706_100115733 420
120 3300031344 Ga0265316_10032336 Ga0265316_100323363 420
121 3300046454 Ga0495592_0047837 Ga0495592_0047837_220_1569 420
122 3300046476 Ga0495662_0012833 Ga0495662_0012833_2186_3535 420
123 3300046477 Ga0495664_0001301 Ga0495664_0001301_11326_12675 420
124 3300046543 Ga0495645_0002570 Ga0495645_0002570_8147_9496 420
125 3300046663 Ga0495635_0080130 Ga0495635_0080130_216_1565 420
126 3300046678 Ga0495599_0002369 Ga0495599_0002369_2326_3675 420
127 3300047470 Ga0495681_0017404 Ga0495681_0017404_587_1948 420
128 3300050496 nmdc:mga07m45_15349_c1 nmdc:mga07m45_15349_c1_1933_3240 420
129 3300005331 Ga0070670_100030215 Ga0070670_1000302152 421
130 3300005985 Ga0081539_10009608 Ga0081539_100096082 421
131 3300003762 Ga0055542_1002317 Ga0055542_10023174 422
132 3300025253 Ga0209677_106842 Ga0209677_1068422 422
133 3300025254 Ga0209148_1000208 Ga0209148_100020868 422
134 3300031344 Ga0265316_10126634 Ga0265316_101266342 422
135 3300047472 Ga0495686_0002697 Ga0495686_0002697_5885_7270 422
136 3300047472 Ga0495686_0097058 Ga0495686_0097058_42_1481 422
137 3300014325 Ga0163163_10023536 Ga0163163_100235363 423
138 3300031344 Ga0265316_10011343 Ga0265316_100113432 423
139 3300049570 Ga0501033_0023676 Ga0501033_0023676_2818_4209 424
140 3300049573 Ga0501037_0032285 Ga0501037_0032285_2326_3717 424
141 3300049580 Ga0501046_0001705 Ga0501046_0001705_16893_18284 424
142 3300049822 Ga0501035_0121130 Ga0501035_0121130_733_2124 424
143 3300049823 Ga0501044_0032735 Ga0501044_0032735_1679_3070 424
144 3300053136 Ga0500559_0050414 Ga0500559_0050414_421_1755 424
145 3300012513 Ga0157326_1001509 Ga0157326_10015092 425
146 3300014325 Ga0163163_10063715 Ga0163163_100637153 425
147 3300025304 Ga0209257_1008590 Ga0209257_10085903 426
148 3300025904 Ga0207647_10012153 Ga0207647_100121536 426
149 3300031344 Ga0265316_10006259 Ga0265316_100062593 426
150 3300031712 Ga0265342_10010490 Ga0265342_100104905 426
151 3300042005 Ga0439448_0003526 Ga0439448_0003526_1604_2905 426
152 3300042157 Ga0439458_0006810 Ga0439458_0006810_1177_2478 426
153 3300046691 Ga0495670_0000821 Ga0495670_0000821_7675_9018 426
154 3300047472 Ga0495686_0103653 Ga0495686_0103653_126_1469 426
155 3300042005 Ga0439448_0005501 Ga0439448_0005501_760_2070 427
156 3300042157 Ga0439458_0003503 Ga0439458_0003503_2282_3592 427
157 3300047443 Ga0495687_000089 Ga0495687_000089_67562_68914 427
158 3300005328 Ga0070676_10058171 Ga0070676_100581711 428
159 3300025907 Ga0207645_10008073 Ga0207645_100080732 428
160 3300028786 Ga0307517_10010248 Ga0307517_100102488 428
161 3300006048 Ga0075363_100069221 Ga0075363_1000692212 430
162 3300050490 nmdc:mga03n38_60516_c1 nmdc:mga03n38_60516_c1_20_1318 430
163 3300025937 Ga0207669_10000815 Ga0207669_100008159 431
164 3300028653 Ga0265323_10000092 Ga0265323_100000923 431
165 3300028654 Ga0265322_10004774 Ga0265322_100047743 431
166 3300031344 Ga0265316_10071709 Ga0265316_100717092 431
167 3300053136 Ga0500559_0010533 Ga0500559_0010533_464_1810 432
168 3300005457 Ga0070662_100046528 Ga0070662_1000465282 435
169 3300005842 Ga0068858_100004611 Ga0068858_1000046112 435
170 3300013100 Ga0157373_10029116 Ga0157373_100291163 435
171 3300013105 Ga0157369_10290588 Ga0157369_102905882 435
172 3300025933 Ga0207706_10022316 Ga0207706_100223164 435
173 3300026035 Ga0207703_10093968 Ga0207703_100939682 435
174 3300001989 JGI24739J22299_10000733 JGI24739J22299_1000073311 436
175 3300001990 JGI24737J22298_10002196 JGI24737J22298_100021965 436
176 3300002067 JGI24735J21928_10002052 JGI24735J21928_100020523 436
177 3300002075 JGI24738J21930_10001097 JGI24738J21930_100010977 436
178 3300003214 JGI25165J46597_1000050 JGI25165J46597_1000050182 436
179 3300003762 Ga0055542_1000037 Ga0055542_1000037139 436
180 3300003763 Ga0055529_1000042 Ga0055529_1000042139 436
181 3300005457 Ga0070662_100004533 Ga0070662_1000045333 436
182 3300009093 Ga0105240_10169269 Ga0105240_101692693 436
183 3300013105 Ga0157369_10006472 Ga0157369_100064729 436
184 3300025230 Ga0209563_100116 Ga0209563_100116105 436
185 3300025231 Ga0207427_101696 Ga0207427_1016963 436
186 3300025250 Ga0209026_1002398 Ga0209026_10023986 436
187 3300025254 Ga0209148_1000026 Ga0209148_1000026522 436
188 3300025261 Ga0209233_1000041 Ga0209233_1000041359 436
189 3300025272 Ga0209455_1000005 Ga0209455_10000051269 436
190 3300025904 Ga0207647_10000375 Ga0207647_100003758 436
191 3300025913 Ga0207695_10231362 Ga0207695_102313621 436
192 3300025933 Ga0207706_10015025 Ga0207706_100150253 436
193 3300025933 Ga0207706_10145048 Ga0207706_101450482 436
194 3300025986 Ga0207658_10019191 Ga0207658_100191912 436
195 3300028786 Ga0307517_10119087 Ga0307517_101190872 436
196 3300037312 Ga0395899_0003340 Ga0395899_0003340_6662_7972 436
197 3300037418 Ga0395900_0036665 Ga0395900_0036665_2363_3673 436
198 3300037418 Ga0395900_0170113 Ga0395900_0170113_341_1651 436
199 3300046471 Ga0495650_0000192 Ga0495650_0000192_47715_49067 436
200 3300046492 Ga0495585_0008311 Ga0495585_0008311_1886_3247 436
201 3300046506 Ga0495583_0000535 Ga0495583_0000535_48171_49523 436
202 3300046506 Ga0495583_0019247 Ga0495583_0019247_79_1431 436
203 3300046506 Ga0495583_0020791 Ga0495583_0020791_849_2210 436
204 3300046507 Ga0495606_0007523 Ga0495606_0007523_6929_8290 436
205 3300046518 Ga0495631_0029972 Ga0495631_0029972_438_1790 436
206 3300046522 Ga0495643_0000570 Ga0495643_0000570_19092_20444 436
207 3300046524 Ga0495648_0000069 Ga0495648_0000069_2345_3697 436
208 3300046524 Ga0495648_0023343 Ga0495648_0023343_2183_3535 436
209 3300046525 Ga0495663_0000451 Ga0495663_0000451_2114_3475 436
210 3300046558 Ga0495633_0002505 Ga0495633_0002505_1936_3288 436
211 3300046616 Ga0495668_0000109 Ga0495668_0000109_71099_72460 436
212 3300046648 Ga0495611_0083718 Ga0495611_0083718_49_1410 436
213 3300046660 Ga0495625_0000341 Ga0495625_0000341_2120_3472 436
214 3300046660 Ga0495625_0003209 Ga0495625_0003209_1726_3078 436
215 3300046809 Ga0495600_0002395 Ga0495600_0002395_1084_2436 436
216 3300046810 Ga0495660_0029645 Ga0495660_0029645_234_1586 436
217 3300047443 Ga0495687_000061 Ga0495687_000061_149225_150634 436
218 3300053079 Ga0500610_0000160 Ga0500610_0000160_18610_19962 436
219 3300053119 Ga0500595_000463 Ga0500595_000463_16287_17639 436
220 3300053130 Ga0500642_0000345 Ga0500642_0000345_4410_5771 436
221 3300053177 Ga0500636_0000388 Ga0500636_0000388_3585_5000 436
222 3300053730 Ga0500645_000008 Ga0500645_000008_60559_61911 436

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14583

Pectate_lyase22

Oligogalacturonate lyase

258

492

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pe7-assembly1.cif.gz_A oligogalacturonate lyase in complex with manganese 0.8346 22 431
3c5m-assembly3.cif.gz_C crystal structure of oligogalacturonate lyase (vpa0088) from vibrio parahaemolyticus. northeast structural genomics consortium target vpr199 0.8175 23 431
3c5m-assembly2.cif.gz_B crystal structure of oligogalacturonate lyase (vpa0088) from vibrio parahaemolyticus. northeast structural genomics consortium target vpr199 0.8087 23 431
3pe7-assembly1.cif.gz_A oligogalacturonate lyase in complex with manganese 0.8008 22 431
3c5m-assembly3.cif.gz_C crystal structure of oligogalacturonate lyase (vpa0088) from vibrio parahaemolyticus. northeast structural genomics consortium target vpr199 0.7867 23 431
ID Description Score Start End Superfamily
3c5mB00 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.8101 23 431 2.130.10.10
3c5mB00 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.7793 23 431 2.130.10.10
af_A4I7C0_216_465_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.7531 205 228 3.30.470.20
af_A0A1D6GDM6_475_615_2.120.10.30 Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain 0.7414 138 293 2.120.10.30
af_A0A0R0JZQ4_24_144_2.40.128.630 Mainly Beta;Beta Barrel;Lipocalin; 0.7372 208 315 2.40.128.630
ID Description Score Start End GO Terms
AF-A0A4Q6AJD5-F1-model_v4 Oligogalacturonate lyase domain-containing protein 0.9655 239 430
AF-A0A829YAC5-F1-model_v4 Oligogalacturonate lyase domain-containing protein 0.9622 24 436 GO:0045490
GO:0047487
AF-A0A1I7M2P7-F1-model_v4 Oligogalacturonide lyase 0.9616 46 433 GO:0045490
GO:0047487
AF-A0A4Q6AJD5-F1-model_v4 Oligogalacturonate lyase domain-containing protein 0.96 239 430
AF-A0A2G5QVW0-F1-model_v4 Oligogalacturonate lyase 0.9577 24 433 GO:0045490
GO:0047487

Feature Viewer

pLDDT pTM Quality
87.73 0.86 High
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Predicted Structure (AlphaFold2)

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