F336367

General Info

Members Datasets Scaffolds Average Seq Length
224 186 448 316

Family's Representative Sequence

Representative Sequence 3300005347|Ga0070668_100158825|Ga0070668_1001588252
Length 350
Sequence MRAMSGPDSTTQSIGRQNIRLDWEDLMRKLLAALAAATMLALTSGADAQTYPDRTITMVVPFAAGGPTDTVTRLVAEAMSKDLGQQIVVENVGGAGGTLGAARVAKAEPDGYTLLLHHIGMATSDTLYRKLPYKTLDAFDYVGLVTDVPMTIVARKDFEATDLKSLIDYVKANKDKVTLANAGIGAASHLCGMMFMSAIQTPLVTVPYKGTGPAMTDLLGGQVDLMCDQTTNTTKHIKGGTIKAYAVTSAKRLDVLPDLPTAEEAGLTGFQVGIWHGVYAPKGTPPAVTERLAKSLQLALKDPNVVARFAELGTQPSSEADATPAALKAKLESEIARWKPVIDAAGQYAD

Samples

Sample ID Description Type Environment
1 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
5 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
6 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
34 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
38 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
94 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
95 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
96 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
97 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
98 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
99 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
100 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
101 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
102 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
103 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
104 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
105 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
106 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
107 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
108 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
109 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
110 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
111 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
112 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
113 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
114 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
115 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
116 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
117 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
118 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
119 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
120 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
121 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
122 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
123 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
124 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
125 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
126 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
127 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
128 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
129 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
130 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
131 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
132 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
133 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
134 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
135 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
136 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
137 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
138 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
139 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
144 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
145 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
146 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
147 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
148 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
149 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
150 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
151 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
152 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
153 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
154 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
155 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
156 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
157 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
158 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
159 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
160 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
161 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
162 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
163 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
164 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
165 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
166 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
167 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
168 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
169 2551306090 Sinorhizobium meliloti A0641M Isolate Nodule
170 2643221551 Mesorhizobium sp. Root1471 Isolate Unclassified
171 2643221555 Mesorhizobium sp. Root554 Isolate Unclassified
172 2643221558 Rhizobium sp. Root149 Isolate Unclassified
173 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified
174 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
175 2842694124 Methylopila sp. R-72369 Isolate Unclassified
176 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
177 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
178 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
179 2906393657 Mesorhizobium sp. M7A.F.Ca.CA.001.11.2.1 Isolate Nodule
180 2916068649 Sinorhizobium meliloti USDA1220 Isolate Nodule
181 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
182 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
183 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
184 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
185 2958137437 Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 Isolate Nodule
186 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.62
Metatranscriptomes 0.45
Isolates 8.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.27
Nodule 3.57
Rhizoplane 4.46
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070668_100158825 3300005347 Bacteria 1833
2 JGI25406J46586_10004533 3300003203 Bacteria 6468
3 JGI25153J46596_10029415 3300003215 Bacteria 1887
4 Ga0055531_10000179 3300003794 Bacteria 72059
5 Ga0055531_10000489 3300003794 Bacteria 36263
6 Ga0065165_1000080 3300005262 Bacteria 159638
7 Ga0070676_10071785 3300005328 Bacteria 2080
8 Ga0070683_100021767 3300005329 Bacteria 5723
9 Ga0070677_10003522 3300005333 Bacteria 5049
10 Ga0070666_10085847 3300005335 Bacteria 2156
11 Ga0070666_10251648 3300005335 Bacteria 1251
12 Ga0068868_100000130 3300005338 Bacteria 48331
13 Ga0070687_100034938 3300005343 Bacteria 2491
14 Ga0070661_100005798 3300005344 Bacteria 8494
15 Ga0070661_100245209 3300005344 Bacteria 1381
16 Ga0070669_100033747 3300005353 Bacteria 3703
17 Ga0070671_100018913 3300005355 Bacteria 5600
18 Ga0070671_100378979 3300005355 Bacteria 1209
19 Ga0070674_100070040 3300005356 Bacteria 2476
20 Ga0070673_100045475 3300005364 Bacteria 3404
21 Ga0070667_100081536 3300005367 Bacteria 2769
22 Ga0070667_100323263 3300005367 Bacteria 1392
23 Ga0070700_100063193 3300005441 Bacteria 2341
24 Ga0070678_100007700 3300005456 Bacteria 6403
25 Ga0070678_100119434 3300005456 Bacteria 2076
26 Ga0068867_100129191 3300005459 Bacteria 1962
27 Ga0070684_100088778 3300005535 Bacteria 2747
28 Ga0070672_100000439 3300005543 Bacteria 24276
29 Ga0068855_100348859 3300005563 Bacteria 1631
30 Ga0070664_100246532 3300005564 Bacteria 1605
31 Ga0068854_100088125 3300005578 Bacteria 2304
32 Ga0068852_100000363 3300005616 Bacteria 30619
33 Ga0068852_100149746 3300005616 Bacteria 2169
34 Ga0068864_100184790 3300005618 Bacteria 1907
35 Ga0068861_100020406 3300005719 Bacteria 4747
36 Ga0068851_10007685 3300005834 Bacteria 4958
37 Ga0081538_10009005 3300005981 Bacteria 8383
38 Ga0081539_10000054 3300005985 Bacteria 259053
39 Ga0075365_10165411 3300006038 Bacteria 1543
40 Ga0075367_10016951 3300006178 Bacteria 3988
41 Ga0075366_10030878 3300006195 Bacteria 3151
42 Ga0075366_10095156 3300006195 Bacteria 1786
43 Ga0097621_100029345 3300006237 Bacteria 4343
44 Ga0075428_100186281 3300006844 Bacteria 2246
45 Ga0075431_100371073 3300006847 Bacteria 1436
46 Ga0075431_100570591 3300006847 Bacteria 1117
47 Ga0075433_10061123 3300006852 Bacteria 3300
48 Ga0075429_100093288 3300006880 Bacteria 2626
49 Ga0068865_100033344 3300006881 Bacteria 3448
50 Ga0105240_10030649 3300009093 Bacteria 6987
51 Ga0111539_10001601 3300009094 Bacteria 30196
52 Ga0105243_10009275 3300009148 Bacteria 7510
53 Ga0105248_10026345 3300009177 Bacteria 6467
54 Ga0105248_10198328 3300009177 Bacteria 2261
55 Ga0105248_10203587 3300009177 Bacteria 2230
56 Ga0105238_10013724 3300009551 Bacteria 8186
57 Ga0105249_10130998 3300009553 Bacteria 2394
58 Ga0157374_10010513 3300013296 Bacteria 7964
59 Ga0157374_10057998 3300013296 Bacteria 3618
60 Ga0157378_10004300 3300013297 Bacteria 12543
61 Ga0157378_10159735 3300013297 Bacteria 2107
62 Ga0163162_10018399 3300013306 Bacteria 6846
63 Ga0157375_10002629 3300013308 Bacteria 15567
64 Ga0157380_10016256 3300014326 Bacteria 5483
65 Ga0157380_10165257 3300014326 Bacteria 1928
66 Ga0157376_10021688 3300014969 Bacteria 4992
67 Ga0209675_1001233 3300025291 Bacteria 15391
68 Ga0209676_1016717 3300025292 Bacteria 2634
69 Ga0209758_1000105 3300025297 Bacteria 221415
70 Ga0209050_1005903 3300025298 Bacteria 7477
71 Ga0209051_1001396 3300025303 Bacteria 20779
72 Ga0209257_1004102 3300025304 Bacteria 11650
73 Ga0207697_10004438 3300025315 Bacteria 6703
74 Ga0207656_10002803 3300025321 Bacteria 5927
75 Ga0207682_10001269 3300025893 Bacteria 11611
76 Ga0207682_10004674 3300025893 Bacteria 5687
77 Ga0207642_10008383 3300025899 Bacteria 3541
78 Ga0207688_10001042 3300025901 Bacteria 14210
79 Ga0207680_10211043 3300025903 Bacteria 1327
80 Ga0207645_10019071 3300025907 Bacteria 4504
81 Ga0207662_10002289 3300025918 Bacteria 9591
82 Ga0207649_10151993 3300025920 Bacteria 1595
83 Ga0207681_10018008 3300025923 Bacteria 4444
84 Ga0207650_10003839 3300025925 Bacteria 10272
85 Ga0207659_10001756 3300025926 Bacteria 12832
86 Ga0207644_10128181 3300025931 Bacteria 1939
87 Ga0207706_10013423 3300025933 Bacteria 7447
88 Ga0207706_10067222 3300025933 Bacteria 3153
89 Ga0207669_10020844 3300025937 Bacteria 3446
90 Ga0207704_10032822 3300025938 Bacteria 2944
91 Ga0207691_10051973 3300025940 Bacteria 3744
92 Ga0207711_10537326 3300025941 Bacteria 1090
93 Ga0207661_10034195 3300025944 Bacteria 3951
94 Ga0207679_10022329 3300025945 Bacteria 4308
95 Ga0207651_10039251 3300025960 Bacteria 3120
96 Ga0207712_10351569 3300025961 Bacteria 1225
97 Ga0207668_10238232 3300025972 Bacteria 1471
98 Ga0207640_10067241 3300025981 Bacteria 2397
99 Ga0207658_10036088 3300025986 Bacteria 3544
100 Ga0207658_10170431 3300025986 Bacteria 1793
101 Ga0207677_10000637 3300026023 Bacteria 21182
102 Ga0207708_10047596 3300026075 Bacteria 3264
103 Ga0207708_10285612 3300026075 Bacteria 1338
104 Ga0207648_10014291 3300026089 Bacteria 7338
105 Ga0207676_10370423 3300026095 Bacteria 1330
106 Ga0207674_10014281 3300026116 Bacteria 8776
107 Ga0207675_100024348 3300026118 Bacteria 5630
108 Ga0207675_100290686 3300026118 Bacteria 1590
109 Ga0207683_10000845 3300026121 Bacteria 28102
110 Ga0207428_10000169 3300027907 Bacteria 90667
111 Ga0268265_10119930 3300028380 Bacteria 2165
112 Ga0268265_10241471 3300028380 Bacteria 1594
113 Ga0265318_10001485 3300028577 Bacteria 13712
114 Ga0307515_10000011 3300028794 Bacteria 633903
115 Ga0307515_10031865 3300028794 Bacteria 8758
116 Ga0307515_10134285 3300028794 Bacteria 2702
117 Ga0265328_10002304 3300031239 Bacteria 8604
118 Ga0265325_10137739 3300031241 Bacteria 1163
119 Ga0265329_10022705 3300031242 Bacteria 2096
120 Ga0265327_10031865 3300031251 Bacteria 2958
121 Ga0265327_10079778 3300031251 Bacteria 1619
122 Ga0265316_10008797 3300031344 Bacteria 9330
123 Ga0307408_100000301 3300031548 Bacteria 47479
124 Ga0307514_10000355 3300031649 Bacteria 106758
125 Ga0265314_10000245 3300031711 Bacteria 79757
126 Ga0265342_10013476 3300031712 Bacteria 5481
127 Ga0307413_10022777 3300031824 Bacteria 3383
128 Ga0307410_10211239 3300031852 Bacteria 1487
129 Ga0307406_10347302 3300031901 Bacteria 1158
130 Ga0307407_10087663 3300031903 Bacteria 1900
131 Ga0307407_10174572 3300031903 Bacteria 1419
132 Ga0307409_100436545 3300031995 Bacteria 1260
133 Ga0307416_100327882 3300032002 Bacteria 1537
134 Ga0307411_10041070 3300032005 Bacteria 2940
135 Ga0307507_10087355 3300033179 Bacteria 2697
136 Ga0395905_0301883 3300037471 Bacteria 1489
137 Ga0439466_0053569 3300041411 Bacteria 1316
138 Ga0451802_0208583 3300041460 Bacteria 956
139 Ga0439431_0016515 3300041997 Bacteria 1728
140 Ga0439449_0059366 3300042007 Bacteria 1412
141 Ga0450920_007394 3300042122 Bacteria 1991
142 Ga0450923_032057 3300042125 Bacteria 1075
143 Ga0450898_014859 3300042134 Bacteria 1313
144 Ga0450898_016464 3300042134 Bacteria 1261
145 Ga0450906_011822 3300042145 Bacteria 1627
146 Ga0439460_0074683 3300042461 Bacteria 1056
147 Ga0466972_0023701 3300044658 Bacteria 3051
148 Ga0466965_0010026 3300044683 Bacteria 4408
149 Ga0466965_0011726 3300044683 Bacteria 4112
150 Ga0466965_0047917 3300044683 Bacteria 2116
151 Ga0466970_0082090 3300044765 Bacteria 1743
152 Ga0451576_0049728 3300045051 Bacteria 4400
153 Ga0451576_0296017 3300045051 Bacteria 1692
154 Ga0495638_0017069 3300046460 Bacteria 4850
155 Ga0495607_0000023 3300046501 Bacteria 159908
156 Ga0495658_0055377 3300046683 Bacteria 2259
157 Ga0496102_0003186 3300048905 Bacteria 13912
158 Ga0496104_0326593 3300048907 Bacteria 1447
159 Ga0496105_0225322 3300048908 Bacteria 1525
160 Ga0496108_0162239 3300048911 Bacteria 1932
161 Ga0496109_0005794 3300048912 Bacteria 10342
162 Ga0496109_0361131 3300048912 Bacteria 1372
163 Ga0496110_0104341 3300048913 Bacteria 2543
164 Ga0496112_0048047 3300048915 Bacteria 4185
165 Ga0496113_0079523 3300048916 Bacteria 2510
166 Ga0496116_0001152 3300048919 Bacteria 31208
167 Ga0501305_005205 3300049161 Bacteria 1565
168 Ga0501039_0058054 3300049575 Bacteria 2997
169 Ga0501041_0053881 3300049577 Bacteria 2454
170 Ga0501046_0067124 3300049580 Bacteria 2794
171 Ga0501048_0144427 3300049582 Bacteria 1683
172 Ga0501071_0056389 3300049587 Bacteria 2838
173 Ga0501072_0218913 3300049588 Bacteria 1517
174 Ga0501075_0076929 3300049591 Bacteria 2525
175 Ga0501075_0084021 3300049591 Bacteria 2411
176 Ga0501075_0108551 3300049591 Bacteria 2110
177 Ga0501076_0039219 3300049592 Bacteria 3719
178 Ga0501077_0019250 3300049593 Bacteria 4317
179 Ga0501077_0113775 3300049593 Bacteria 1716
180 Ga0501079_0035578 3300049741 Bacteria 3834
181 Ga0501080_0172071 3300049742 Bacteria 1997
182 Ga0501081_0102989 3300049743 Bacteria 2020
183 nmdc:mga0yw44_1429_c1 3300050492 Bacteria 9479
184 nmdc:mga0k408_122915_c1 3300050493 Bacteria 1538
185 nmdc:mga0k408_71143_c1 3300050493 Bacteria 2030
186 nmdc:mga0qj67_117634_c1 3300050509 Bacteria 2148
187 nmdc:mga08y16_199942_c1 3300050511 Bacteria 2071
188 nmdc:mga08y16_539_c1 3300050511 Bacteria 35073
189 nmdc:mga08y16_667289_c1 3300050511 Bacteria 1042
190 nmdc:mga0a205_46569_c1 3300050515 Bacteria 4182
191 Ga0500593_000036 3300053117 Bacteria 47889
192 Ga0500593_000392 3300053117 Bacteria 17496
193 Ga0500618_000181 3300053125 Bacteria 52402
194 Ga0500568_0000002 3300053139 Bacteria 880601
195 Ga0500573_0011020 3300053140 Bacteria 5056
196 Ga0500616_0049856 3300053153 Bacteria 2213
197 Ga0501084_0142147 3300054114 Bacteria 2021
198 Ga0590071_002399 3300059421 Bacteria 4708
199 Ga0590074_011376 3300059423 Bacteria 1492
200 Ga0590075_029993 3300059424 Bacteria 1377
201 Ga0501082_0118488 3300060353 Bacteria 2294
202 Ga0501082_0133903 3300060353 Bacteria 2150
203 Ga0466962_0135612 3300061719 Bacteria 1191
204 Ga0530510_0036021 3300061734 Bacteria 3567
205 2551692107 2551306086 Bacteria 6843938
206 2551720499 2551306090 Bacteria 7953713
207 2643775073 2643221551 Bacteria 3750538
208 2643793518 2643221555 Bacteria 3749717
209 2643813392 2643221558 Bacteria 5460675
210 2828309886 2828305725 Bacteria 4916900
211 2842334937 2842333319 Bacteria 8899485
212 2842339210 2842333319 Bacteria 8899485
213 2842695547 2842694124 Bacteria 4063419
214 2842780242 2842775625 Bacteria 5587290
215 2857580757 2857576091 Bacteria 5465855
216 2883578496 2883577096 Bacteria 4709178
217 2906400752 2906393657 Bacteria 6790866
218 2916076320 2916068649 Bacteria 6943657
219 2928523552 2928521798 Bacteria 4960112
220 2929201307 2929199973 Bacteria 7260745
221 2933022117 2933016740 Bacteria 6355406
222 2954015833 2954011201 Bacteria 4762601
223 2958142262 2958137437 Bacteria 6050276
224 8055910074 8055909800 Bacteria 7278581
225 Ga0070668_100158825
226 JGI25406J46586_10004533
227 JGI25153J46596_10029415
228 Ga0055531_10000179
229 Ga0055531_10000489
230 Ga0065165_1000080
231 Ga0070676_10071785
232 Ga0070683_100021767
233 Ga0070677_10003522
234 Ga0070666_10085847
235 Ga0070666_10251648
236 Ga0068868_100000130
237 Ga0070687_100034938
238 Ga0070661_100005798
239 Ga0070661_100245209
240 Ga0070669_100033747
241 Ga0070671_100018913
242 Ga0070671_100378979
243 Ga0070674_100070040
244 Ga0070673_100045475
245 Ga0070667_100081536
246 Ga0070667_100323263
247 Ga0070700_100063193
248 Ga0070678_100007700
249 Ga0070678_100119434
250 Ga0068867_100129191
251 Ga0070684_100088778
252 Ga0070672_100000439
253 Ga0068855_100348859
254 Ga0070664_100246532
255 Ga0068854_100088125
256 Ga0068852_100000363
257 Ga0068852_100149746
258 Ga0068864_100184790
259 Ga0068861_100020406
260 Ga0068851_10007685
261 Ga0081538_10009005
262 Ga0081539_10000054
263 Ga0075365_10165411
264 Ga0075367_10016951
265 Ga0075366_10030878
266 Ga0075366_10095156
267 Ga0097621_100029345
268 Ga0075428_100186281
269 Ga0075431_100371073
270 Ga0075431_100570591
271 Ga0075433_10061123
272 Ga0075429_100093288
273 Ga0068865_100033344
274 Ga0105240_10030649
275 Ga0111539_10001601
276 Ga0105243_10009275
277 Ga0105248_10026345
278 Ga0105248_10198328
279 Ga0105248_10203587
280 Ga0105238_10013724
281 Ga0105249_10130998
282 Ga0157374_10010513
283 Ga0157374_10057998
284 Ga0157378_10004300
285 Ga0157378_10159735
286 Ga0163162_10018399
287 Ga0157375_10002629
288 Ga0157380_10016256
289 Ga0157380_10165257
290 Ga0157376_10021688
291 Ga0209675_1001233
292 Ga0209676_1016717
293 Ga0209758_1000105
294 Ga0209050_1005903
295 Ga0209051_1001396
296 Ga0209257_1004102
297 Ga0207697_10004438
298 Ga0207656_10002803
299 Ga0207682_10001269
300 Ga0207682_10004674
301 Ga0207642_10008383
302 Ga0207688_10001042
303 Ga0207680_10211043
304 Ga0207645_10019071
305 Ga0207662_10002289
306 Ga0207649_10151993
307 Ga0207681_10018008
308 Ga0207650_10003839
309 Ga0207659_10001756
310 Ga0207644_10128181
311 Ga0207706_10013423
312 Ga0207706_10067222
313 Ga0207669_10020844
314 Ga0207704_10032822
315 Ga0207691_10051973
316 Ga0207711_10537326
317 Ga0207661_10034195
318 Ga0207679_10022329
319 Ga0207651_10039251
320 Ga0207712_10351569
321 Ga0207668_10238232
322 Ga0207640_10067241
323 Ga0207658_10036088
324 Ga0207658_10170431
325 Ga0207677_10000637
326 Ga0207708_10047596
327 Ga0207708_10285612
328 Ga0207648_10014291
329 Ga0207676_10370423
330 Ga0207674_10014281
331 Ga0207675_100024348
332 Ga0207675_100290686
333 Ga0207683_10000845
334 Ga0207428_10000169
335 Ga0268265_10119930
336 Ga0268265_10241471
337 Ga0265318_10001485
338 Ga0307515_10000011
339 Ga0307515_10031865
340 Ga0307515_10134285
341 Ga0265328_10002304
342 Ga0265325_10137739
343 Ga0265329_10022705
344 Ga0265327_10031865
345 Ga0265327_10079778
346 Ga0265316_10008797
347 Ga0307408_100000301
348 Ga0307514_10000355
349 Ga0265314_10000245
350 Ga0265342_10013476
351 Ga0307413_10022777
352 Ga0307410_10211239
353 Ga0307406_10347302
354 Ga0307407_10087663
355 Ga0307407_10174572
356 Ga0307409_100436545
357 Ga0307416_100327882
358 Ga0307411_10041070
359 Ga0307507_10087355
360 Ga0395905_0301883
361 Ga0439466_0053569
362 Ga0451802_0208583
363 Ga0439431_0016515
364 Ga0439449_0059366
365 Ga0450920_007394
366 Ga0450923_032057
367 Ga0450898_014859
368 Ga0450898_016464
369 Ga0450906_011822
370 Ga0439460_0074683
371 Ga0466972_0023701
372 Ga0466965_0010026
373 Ga0466965_0011726
374 Ga0466965_0047917
375 Ga0466970_0082090
376 Ga0451576_0049728
377 Ga0451576_0296017
378 Ga0495638_0017069
379 Ga0495607_0000023
380 Ga0495658_0055377
381 Ga0496102_0003186
382 Ga0496104_0326593
383 Ga0496105_0225322
384 Ga0496108_0162239
385 Ga0496109_0005794
386 Ga0496109_0361131
387 Ga0496110_0104341
388 Ga0496112_0048047
389 Ga0496113_0079523
390 Ga0496116_0001152
391 Ga0501305_005205
392 Ga0501039_0058054
393 Ga0501041_0053881
394 Ga0501046_0067124
395 Ga0501048_0144427
396 Ga0501071_0056389
397 Ga0501072_0218913
398 Ga0501075_0076929
399 Ga0501075_0084021
400 Ga0501075_0108551
401 Ga0501076_0039219
402 Ga0501077_0019250
403 Ga0501077_0113775
404 Ga0501079_0035578
405 Ga0501080_0172071
406 Ga0501081_0102989
407 nmdc:mga0yw44_1429_c1
408 nmdc:mga0k408_122915_c1
409 nmdc:mga0k408_71143_c1
410 nmdc:mga0qj67_117634_c1
411 nmdc:mga08y16_199942_c1
412 nmdc:mga08y16_539_c1
413 nmdc:mga08y16_667289_c1
414 nmdc:mga0a205_46569_c1
415 Ga0500593_000036
416 Ga0500593_000392
417 Ga0500618_000181
418 Ga0500568_0000002
419 Ga0500573_0011020
420 Ga0500616_0049856
421 Ga0501084_0142147
422 Ga0590071_002399
423 Ga0590074_011376
424 Ga0590075_029993
425 Ga0501082_0118488
426 Ga0501082_0133903
427 Ga0466962_0135612
428 Ga0530510_0036021
429 2551692107
430 2551720499
431 2643775073
432 2643793518
433 2643813392
434 2828309886
435 2842334937
436 2842339210
437 2842695547
438 2842780242
439 2857580757
440 2883578496
441 2906400752
442 2916076320
443 2928523552
444 2929201307
445 2933022117
446 2954015833
447 2958142262
448 8055910074

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

71

347

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.9591 29 328
6hke-assembly1.cif.gz_A matc (rpa3494) from rhodopseudomonas palustris with bound malate 0.9561 29 320
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.956 29 328
8hkb-assembly1.cif.gz_A tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d 0.9559 32 328
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9531 28 324
ID Description Score Start End Superfamily
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9755 128 250 3.40.190.10
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9602 128 250 3.40.190.10
2f5xC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9557 29 328 3.40.190.150
2f5xC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9557 129 250 3.40.190.10
2f5xC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9502 29 328 3.40.190.150
ID Description Score Start End GO Terms
AF-A0A537USM6-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9758 21 328
AF-A0A1F4AHA8-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9755 54 324
AF-A0A1F4CWQ1-F1-model_v4 LacI family transcriptional regulator 0.9729 29 328
AF-A0A1Q4BG09-F1-model_v4 ABC transporter substrate-binding protein 0.9723 28 328
AF-A0A537TDW9-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein BugD 0.9722 72 234

Map