F337259

General Info

Members Datasets Scaffolds Average Seq Length
224 136 448 478

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2786546517|2787436194
Length 555
Sequence VIVWFRQDLRLRDNSALAAAVRTGAPVIPLYIHAPQEEGEWPPGAASRWWLHHSLLALEGALREAGSRLILRVVAPHGPAEARSSLAVLRELIRQTGADTVLWNRRYEPAALMRDKEIKARLRDGLPGPAGESAGPPVHARSFCTALLYEPWDPRVRNKSGRPFRVFTPFWRHCLTLTPPEAPCEGPRPGDLPATAGNGWPASASLADLALLPHVDWARRFSRVWQPGEAGASAALQRFTESRLLSYTERRDFPGDAGTSRLSPHLHFGEISPRQVWHAVRVAAQERGIASESWTRWQFVTELGWREFSHHLLCHFPHTAVEPLVEDFRRFPWMPVPPGALPNVAADVSDPQSPAHLRECDRMAPAKSQAAAASPGDEARRRYLAWTRGRTGYPMVDAGMRELWATGWMHNRVRMITASFLVKHLLLPWQAGAQWFWDTLVDADLAQNTLGWQWSAGCGADAAPYFRIFNPITQGEKFDPGAAYIRRWVPELKALSDKHIHHPWDVAPDLLRHAGITLGTTYPHPIVDHAAARKAALDAFATLRGEREGGADAED

Samples

Sample ID Description Type Environment
1 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
23 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
27 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
34 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
35 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
36 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
37 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
38 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
56 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
57 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
58 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
61 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
62 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
63 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
64 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
65 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
66 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
67 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
68 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
71 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
74 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
75 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
76 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
77 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
78 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
79 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
80 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
81 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
82 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
83 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
84 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
85 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
86 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
87 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
88 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
89 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
90 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
91 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
92 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
93 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
94 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
95 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
96 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
97 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
98 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
99 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
100 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
101 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
104 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
105 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
106 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
107 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
108 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
109 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
110 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
111 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
112 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
113 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
116 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
117 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
118 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
121 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
122 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
125 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
127 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
128 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
131 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
132 2786546517 Verrucomicrobia bacterium LW23 Isolate Rhizoplane
133 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
134 2524614729 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
135 2627854209 Arenimonas oryziterrae YC6267, DSM 21050 Isolate Rhizosphere
136 2842775625 Roseomonas sp. R-71825 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.54
Metatranscriptomes 2.23
Isolates 2.23

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.23
Nodule 0
Rhizoplane 6.25
Rhizosphere 86.16
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1001186 3300002737 Bacteria 15360
2 JGI25165J46597_1000003 3300003214 Bacteria 694080
3 rootH2_10120630 3300003320 Bacteria 6782
4 Ga0070658_10008308 3300005327 Bacteria 8352
5 Ga0070690_100050122 3300005330 Bacteria 2663
6 Ga0070680_100031364 3300005336 Bacteria 4272
7 Ga0070689_100081626 3300005340 Bacteria 2539
8 Ga0070668_100192097 3300005347 Bacteria 1672
9 Ga0070711_100128189 3300005439 Bacteria 1886
10 Ga0070663_100114027 3300005455 Bacteria 2035
11 Ga0070679_100047359 3300005530 Bacteria 4285
12 Ga0068853_100005140 3300005539 Bacteria 10232
13 Ga0070696_100173752 3300005546 Bacteria 1594
14 Ga0068855_100006732 3300005563 Bacteria 13943
15 Ga0068855_100018446 3300005563 Bacteria 8385
16 Ga0068856_100006499 3300005614 Bacteria 11464
17 Ga0068856_100102174 3300005614 Bacteria 2860
18 Ga0068856_100154329 3300005614 Bacteria 2306
19 Ga0070702_100077860 3300005615 Bacteria 1978
20 Ga0068852_100011725 3300005616 Bacteria 6616
21 Ga0068852_100054372 3300005616 Bacteria 3451
22 Ga0068859_100017652 3300005617 Bacteria 7174
23 Ga0068858_100033474 3300005842 Bacteria 4768
24 Ga0068860_100012839 3300005843 Bacteria 8235
25 Ga0070716_100090771 3300006173 Bacteria 1849
26 Ga0070712_100085530 3300006175 Bacteria 2296
27 Ga0097620_100017652 3300006931 Bacteria 7174
28 Ga0105240_10013898 3300009093 Bacteria 11024
29 Ga0105240_10088176 3300009093 Bacteria 3797
30 Ga0105243_10015906 3300009148 Bacteria 5691
31 Ga0105241_10007358 3300009174 Bacteria 8099
32 Ga0105248_10003482 3300009177 Bacteria 17471
33 Ga0105238_10005804 3300009551 Bacteria 12224
34 Ga0105238_10009904 3300009551 Bacteria 9555
35 Ga0105238_10081945 3300009551 Bacteria 3216
36 Ga0157370_10004955 3300013104 Bacteria 15070
37 Ga0157370_10066273 3300013104 Bacteria 3415
38 Ga0157369_10122321 3300013105 Bacteria 2760
39 Ga0157378_10083010 3300013297 Bacteria 2899
40 Ga0157372_10231360 3300013307 Bacteria 2143
41 Ga0157375_10000006 3300013308 Bacteria 384086
42 Ga0157380_10000731 3300014326 Bacteria 20478
43 Ga0157379_10025113 3300014968 Bacteria 5290
44 Ga0206350_10921605 3300020080 Bacteria 2966
45 Ga0209233_1000015 3300025261 Bacteria 980563
46 Ga0209675_1002894 3300025291 Bacteria 8498
47 Ga0207688_10039740 3300025901 Bacteria 2613
48 Ga0207647_10000501 3300025904 Bacteria 31381
49 Ga0207707_10041630 3300025912 Bacteria 4011
50 Ga0207695_10090630 3300025913 Bacteria 3072
51 Ga0207693_10051799 3300025915 Bacteria 3220
52 Ga0207693_10080375 3300025915 Bacteria 2552
53 Ga0207663_10076124 3300025916 Bacteria 2179
54 Ga0207657_10008452 3300025919 Bacteria 10443
55 Ga0207709_10052614 3300025935 Bacteria 2502
56 Ga0207669_10040199 3300025937 Bacteria 2711
57 Ga0207665_10101219 3300025939 Bacteria 2012
58 Ga0207711_10132495 3300025941 Bacteria 2236
59 Ga0207667_10006605 3300025949 Bacteria 14022
60 Ga0207667_10036427 3300025949 Bacteria 5274
61 Ga0207667_10074270 3300025949 Bacteria 3532
62 Ga0207703_10051507 3300026035 Bacteria 3337
63 Ga0207703_10055869 3300026035 Bacteria 3213
64 Ga0207639_10003753 3300026041 Bacteria 10222
65 Ga0207702_10107044 3300026078 Bacteria 2479
66 Ga0207702_10162455 3300026078 Bacteria 2041
67 Ga0268264_10006869 3300028381 Bacteria 9554
68 Ga0265319_1000031 3300028563 Bacteria 124456
69 Ga0265319_1007710 3300028563 Bacteria 4806
70 Ga0265318_10002069 3300028577 Bacteria 10993
71 Ga0265323_10003105 3300028653 Bacteria 7387
72 Ga0265323_10004431 3300028653 Bacteria 6050
73 Ga0265322_10001206 3300028654 Bacteria 8819
74 Ga0265338_10000329 3300028800 Bacteria 86337
75 Ga0265338_10000690 3300028800 Bacteria 58002
76 Ga0265338_10028025 3300028800 Bacteria 5632
77 Ga0265338_10058088 3300028800 Bacteria 3418
78 Ga0265338_10160269 3300028800 Bacteria 1738
79 Ga0265330_10009598 3300031235 Bacteria 4592
80 Ga0265330_10018028 3300031235 Bacteria 3245
81 Ga0265320_10001419 3300031240 Bacteria 17414
82 Ga0265320_10005830 3300031240 Bacteria 7848
83 Ga0265325_10045944 3300031241 Bacteria 2267
84 Ga0265329_10007086 3300031242 Bacteria 4369
85 Ga0265340_10013978 3300031247 Bacteria 4207
86 Ga0265340_10027279 3300031247 Bacteria 2880
87 Ga0265339_10054924 3300031249 Bacteria 2162
88 Ga0265331_10011862 3300031250 Bacteria 4753
89 Ga0265327_10000114 3300031251 Bacteria 174833
90 Ga0265327_10004561 3300031251 Bacteria 12204
91 Ga0265327_10016166 3300031251 Bacteria 4761
92 Ga0265316_10006493 3300031344 Bacteria 11164
93 Ga0265316_10059553 3300031344 Bacteria 2969
94 Ga0265316_10060314 3300031344 Bacteria 2948
95 Ga0265313_10000533 3300031595 Bacteria 39787
96 Ga0265313_10007013 3300031595 Bacteria 7814
97 Ga0265313_10044640 3300031595 Bacteria 2162
98 Ga0316575_10000955 3300031665 Bacteria 8919
99 Ga0316575_10019082 3300031665 Bacteria 2618
100 Ga0316579_10000278 3300031691 Bacteria 15806
101 Ga0316579_10002865 3300031691 Bacteria 6601
102 Ga0316579_10022708 3300031691 Bacteria 2809
103 Ga0265314_10000380 3300031711 Bacteria 60805
104 Ga0265314_10008022 3300031711 Bacteria 9103
105 Ga0265314_10052176 3300031711 Bacteria 2844
106 Ga0265342_10000417 3300031712 Bacteria 46743
107 Ga0265342_10015822 3300031712 Bacteria 4951
108 Ga0265342_10018288 3300031712 Bacteria 4543
109 Ga0316576_10000305 3300031727 Bacteria 21761
110 Ga0316576_10000866 3300031727 Bacteria 15344
111 Ga0316576_10001617 3300031727 Bacteria 12304
112 Ga0316576_10012582 3300031727 Bacteria 5596
113 Ga0316576_10016012 3300031727 Bacteria 5052
114 Ga0316576_10024555 3300031727 Bacteria 4209
115 Ga0316576_10055930 3300031727 Bacteria 2880
116 Ga0316578_10000374 3300031728 Bacteria 14259
117 Ga0316578_10001244 3300031728 Bacteria 10148
118 Ga0316578_10005733 3300031728 Bacteria 6056
119 Ga0316578_10010962 3300031728 Bacteria 4722
120 Ga0316578_10012231 3300031728 Bacteria 4521
121 Ga0316577_10000439 3300031733 Bacteria 16228
122 Ga0316577_10027372 3300031733 Bacteria 3178
123 Ga0307410_10038476 3300031852 Bacteria 3134
124 Ga0316583_10009057 3300032133 Bacteria 3589
125 Ga0316585_10000033 3300032137 Bacteria 20771
126 Ga0316585_10005315 3300032137 Bacteria 3629
127 Ga0316585_10033358 3300032137 Bacteria 1624
128 Ga0316580_10000116 3300032139 Bacteria 14915
129 Ga0316580_10001828 3300032139 Bacteria 5699
130 Ga0316593_10000690 3300032168 Bacteria 6580
131 Ga0316596_1000078 3300033541 Bacteria 11479
132 Ga0316596_1000978 3300033541 Bacteria 5476
133 Ga0316596_1005789 3300033541 Bacteria 2843
134 Ga0373954_0006339 3300035118 Bacteria 5157
135 Ga0316574_0000042 3300035398 Bacteria 31161
136 Ga0316574_0018402 3300035398 Bacteria 4104
137 Ga0316574_0035994 3300035398 Bacteria 3029
138 Ga0316574_0074739 3300035398 Bacteria 2145
139 Ga0316574_0076518 3300035398 Bacteria 2120
140 Ga0373935_0042071 3300035692 Bacteria 2872
141 Ga0373927_0030735 3300035695 Bacteria 3503
142 Ga0373947_0100456 3300035725 Bacteria 1818
143 Ga0316582_0002284 3300036647 Bacteria 8940
144 Ga0316582_0013266 3300036647 Bacteria 4633
145 Ga0316582_0014803 3300036647 Bacteria 4441
146 Ga0316582_0016957 3300036647 Bacteria 4201
147 Ga0316582_0051752 3300036647 Bacteria 2607
148 Ga0316584_0001467 3300036712 Bacteria 14160
149 Ga0316584_0022788 3300036712 Bacteria 4570
150 Ga0373925_0020675 3300037068 Bacteria 4795
151 Ga0400484_38286 3300038725 Bacteria 6005
152 Ga0400490_44655 3300038726 Bacteria 35811
153 Ga0400490_58662 3300038726 Bacteria 21234
154 Ga0400491_01296 3300038727 Bacteria 2485
155 Ga0400491_06101 3300038727 Bacteria 2642
156 Ga0400483_244873 3300039062 Bacteria 3608
157 Ga0400487_65555 3300039110 Bacteria 72965
158 Ga0436361_0077930 3300039447 Bacteria 1745
159 Ga0436361_0952225 3300039447 Bacteria 7741
160 Ga0451577_0000187 3300042876 Bacteria 131592
161 Ga0451577_0010304 3300042876 Bacteria 8948
162 Ga0451577_0014351 3300042876 Bacteria 7386
163 Ga0451577_0039809 3300042876 Bacteria 4222
164 Ga0451577_0079212 3300042876 Bacteria 2929
165 Ga0451577_0083426 3300042876 Bacteria 2851
166 Ga0466969_0010603 3300044656 Bacteria 4884
167 Ga0466966_0008468 3300044684 Bacteria 6809
168 Ga0466961_0002431 3300044693 Bacteria 11554
169 Ga0466964_0001560 3300044706 Bacteria 7892
170 Ga0453684_0000046 3300044712 Bacteria 575242
171 Ga0453684_0016575 3300044712 Bacteria 11502
172 Ga0453684_0017025 3300044712 Bacteria 11291
173 Ga0453684_0040843 3300044712 Bacteria 6289
174 Ga0453684_0053800 3300044712 Bacteria 5251
175 Ga0453684_0145205 3300044712 Bacteria 2827
176 Ga0453684_0261809 3300044712 Bacteria 1980
177 Ga0466971_0000593 3300044719 Bacteria 14350
178 Ga0466970_0028883 3300044765 Bacteria 2916
179 Ga0466957_0027787 3300044842 Bacteria 3364
180 Ga0466959_0006384 3300045049 Bacteria 8162
181 Ga0451576_0076247 3300045051 Bacteria 3490
182 Ga0451576_0244454 3300045051 Bacteria 1875
183 Ga0451576_0265412 3300045051 Bacteria 1795
184 Ga0495592_0136790 3300046454 Bacteria 1708
185 Ga0495638_0000932 3300046460 Bacteria 29683
186 Ga0495628_0028798 3300046516 Bacteria 4511
187 Ga0495630_0016489 3300046517 Bacteria 5400
188 Ga0495666_0031227 3300046526 Bacteria 2610
189 Ga0495625_0002352 3300046660 Bacteria 20624
190 Ga0495684_0026175 3300047471 Bacteria 4482
191 Ga0496100_0004224 3300048903 Bacteria 7590
192 Ga0496101_0011388 3300048904 Bacteria 5901
193 Ga0496101_0134673 3300048904 Bacteria 1879
194 Ga0496102_0003893 3300048905 Bacteria 12644
195 Ga0496103_0037905 3300048906 Bacteria 2956
196 Ga0496103_0080334 3300048906 Bacteria 2050
197 Ga0496104_0013757 3300048907 Bacteria 7298
198 Ga0496104_0281962 3300048907 Bacteria 1575
199 Ga0496106_0001742 3300048909 Bacteria 16245
200 Ga0496106_0085531 3300048909 Bacteria 2428
201 Ga0496107_0044722 3300048910 Bacteria 3183
202 Ga0496114_0002054 3300048917 Bacteria 15322
203 Ga0496114_0029336 3300048917 Bacteria 4520
204 Ga0496121_0000527 3300048924 Bacteria 72759
205 Ga0496121_0020077 3300048924 Bacteria 6638
206 Ga0501034_0021634 3300049571 Bacteria 6551
207 Ga0501034_0084391 3300049571 Bacteria 3178
208 Ga0501047_0006788 3300049581 Bacteria 10754
209 Ga0501047_0050115 3300049581 Bacteria 4032
210 Ga0501047_0099288 3300049581 Bacteria 2790
211 Ga0501047_0134048 3300049581 Bacteria 2357
212 Ga0501080_0067142 3300049742 Bacteria 3336
213 Ga0501083_0002801 3300049744 Bacteria 12037
214 Ga0501035_0014458 3300049822 Bacteria 7285
215 Ga0501035_0159626 3300049822 Bacteria 1953
216 Ga0501044_0011750 3300049823 Bacteria 9486
217 Ga0501044_0169395 3300049823 Bacteria 2156
218 Ga0500559_0010061 3300053136 Bacteria 4072
219 Ga0466962_0000344 3300061719 Bacteria 19918
220 2787436194 2786546517 Bacteria 6614109
221 2524610347 2524023250 Bacteria 5457705
222 2525555650 2524614729 Bacteria 3091755
223 2630650664 2627854209 Bacteria 3093011
224 2842778358 2842775625 Bacteria 5587290
225 JGI25162J39368_1001186
226 JGI25165J46597_1000003
227 rootH2_10120630
228 Ga0070658_10008308
229 Ga0070690_100050122
230 Ga0070680_100031364
231 Ga0070689_100081626
232 Ga0070668_100192097
233 Ga0070711_100128189
234 Ga0070663_100114027
235 Ga0070679_100047359
236 Ga0068853_100005140
237 Ga0070696_100173752
238 Ga0068855_100006732
239 Ga0068855_100018446
240 Ga0068856_100006499
241 Ga0068856_100102174
242 Ga0068856_100154329
243 Ga0070702_100077860
244 Ga0068852_100011725
245 Ga0068852_100054372
246 Ga0068859_100017652
247 Ga0068858_100033474
248 Ga0068860_100012839
249 Ga0070716_100090771
250 Ga0070712_100085530
251 Ga0097620_100017652
252 Ga0105240_10013898
253 Ga0105240_10088176
254 Ga0105243_10015906
255 Ga0105241_10007358
256 Ga0105248_10003482
257 Ga0105238_10005804
258 Ga0105238_10009904
259 Ga0105238_10081945
260 Ga0157370_10004955
261 Ga0157370_10066273
262 Ga0157369_10122321
263 Ga0157378_10083010
264 Ga0157372_10231360
265 Ga0157375_10000006
266 Ga0157380_10000731
267 Ga0157379_10025113
268 Ga0206350_10921605
269 Ga0209233_1000015
270 Ga0209675_1002894
271 Ga0207688_10039740
272 Ga0207647_10000501
273 Ga0207707_10041630
274 Ga0207695_10090630
275 Ga0207693_10051799
276 Ga0207693_10080375
277 Ga0207663_10076124
278 Ga0207657_10008452
279 Ga0207709_10052614
280 Ga0207669_10040199
281 Ga0207665_10101219
282 Ga0207711_10132495
283 Ga0207667_10006605
284 Ga0207667_10036427
285 Ga0207667_10074270
286 Ga0207703_10051507
287 Ga0207703_10055869
288 Ga0207639_10003753
289 Ga0207702_10107044
290 Ga0207702_10162455
291 Ga0268264_10006869
292 Ga0265319_1000031
293 Ga0265319_1007710
294 Ga0265318_10002069
295 Ga0265323_10003105
296 Ga0265323_10004431
297 Ga0265322_10001206
298 Ga0265338_10000329
299 Ga0265338_10000690
300 Ga0265338_10028025
301 Ga0265338_10058088
302 Ga0265338_10160269
303 Ga0265330_10009598
304 Ga0265330_10018028
305 Ga0265320_10001419
306 Ga0265320_10005830
307 Ga0265325_10045944
308 Ga0265329_10007086
309 Ga0265340_10013978
310 Ga0265340_10027279
311 Ga0265339_10054924
312 Ga0265331_10011862
313 Ga0265327_10000114
314 Ga0265327_10004561
315 Ga0265327_10016166
316 Ga0265316_10006493
317 Ga0265316_10059553
318 Ga0265316_10060314
319 Ga0265313_10000533
320 Ga0265313_10007013
321 Ga0265313_10044640
322 Ga0316575_10000955
323 Ga0316575_10019082
324 Ga0316579_10000278
325 Ga0316579_10002865
326 Ga0316579_10022708
327 Ga0265314_10000380
328 Ga0265314_10008022
329 Ga0265314_10052176
330 Ga0265342_10000417
331 Ga0265342_10015822
332 Ga0265342_10018288
333 Ga0316576_10000305
334 Ga0316576_10000866
335 Ga0316576_10001617
336 Ga0316576_10012582
337 Ga0316576_10016012
338 Ga0316576_10024555
339 Ga0316576_10055930
340 Ga0316578_10000374
341 Ga0316578_10001244
342 Ga0316578_10005733
343 Ga0316578_10010962
344 Ga0316578_10012231
345 Ga0316577_10000439
346 Ga0316577_10027372
347 Ga0307410_10038476
348 Ga0316583_10009057
349 Ga0316585_10000033
350 Ga0316585_10005315
351 Ga0316585_10033358
352 Ga0316580_10000116
353 Ga0316580_10001828
354 Ga0316593_10000690
355 Ga0316596_1000078
356 Ga0316596_1000978
357 Ga0316596_1005789
358 Ga0373954_0006339
359 Ga0316574_0000042
360 Ga0316574_0018402
361 Ga0316574_0035994
362 Ga0316574_0074739
363 Ga0316574_0076518
364 Ga0373935_0042071
365 Ga0373927_0030735
366 Ga0373947_0100456
367 Ga0316582_0002284
368 Ga0316582_0013266
369 Ga0316582_0014803
370 Ga0316582_0016957
371 Ga0316582_0051752
372 Ga0316584_0001467
373 Ga0316584_0022788
374 Ga0373925_0020675
375 Ga0400484_38286
376 Ga0400490_44655
377 Ga0400490_58662
378 Ga0400491_01296
379 Ga0400491_06101
380 Ga0400483_244873
381 Ga0400487_65555
382 Ga0436361_0077930
383 Ga0436361_0952225
384 Ga0451577_0000187
385 Ga0451577_0010304
386 Ga0451577_0014351
387 Ga0451577_0039809
388 Ga0451577_0079212
389 Ga0451577_0083426
390 Ga0466969_0010603
391 Ga0466966_0008468
392 Ga0466961_0002431
393 Ga0466964_0001560
394 Ga0453684_0000046
395 Ga0453684_0016575
396 Ga0453684_0017025
397 Ga0453684_0040843
398 Ga0453684_0053800
399 Ga0453684_0145205
400 Ga0453684_0261809
401 Ga0466971_0000593
402 Ga0466970_0028883
403 Ga0466957_0027787
404 Ga0466959_0006384
405 Ga0451576_0076247
406 Ga0451576_0244454
407 Ga0451576_0265412
408 Ga0495592_0136790
409 Ga0495638_0000932
410 Ga0495628_0028798
411 Ga0495630_0016489
412 Ga0495666_0031227
413 Ga0495625_0002352
414 Ga0495684_0026175
415 Ga0496100_0004224
416 Ga0496101_0011388
417 Ga0496101_0134673
418 Ga0496102_0003893
419 Ga0496103_0037905
420 Ga0496103_0080334
421 Ga0496104_0013757
422 Ga0496104_0281962
423 Ga0496106_0001742
424 Ga0496106_0085531
425 Ga0496107_0044722
426 Ga0496114_0002054
427 Ga0496114_0029336
428 Ga0496121_0000527
429 Ga0496121_0020077
430 Ga0501034_0021634
431 Ga0501034_0084391
432 Ga0501047_0006788
433 Ga0501047_0050115
434 Ga0501047_0099288
435 Ga0501047_0134048
436 Ga0501080_0067142
437 Ga0501083_0002801
438 Ga0501035_0014458
439 Ga0501035_0159626
440 Ga0501044_0011750
441 Ga0501044_0169395
442 Ga0500559_0010061
443 Ga0466962_0000344
444 2787436194
445 2524610347
446 2525555650
447 2630650664
448 2842778358

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03441

FAD_binding_7

FAD binding domain of DNA photolyase

299

542

0.93

PF00875

DNA_photolyase

DNA photolyase

1

188

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.9438 1 470
2e0i-assembly2.cif.gz_B crystal structure of archaeal photolyase from sulfolobus tokodaii with two fad molecules: implication of a novel light-harvesting cofactor 0.9395 3 469
4u63-assembly1.cif.gz_A crystal structure of a bacterial class iii photolyase from agrobacterium tumefaciens at 1.67a resolution 0.9379 1 470
2e0i-assembly2.cif.gz_B crystal structure of archaeal photolyase from sulfolobus tokodaii with two fad molecules: implication of a novel light-harvesting cofactor 0.9311 3 469
1owo-assembly1.cif.gz_A data4:photoreduced dna photolyase / received x-rays dose 1.2 exp15 photons/mm2 0.9298 1 472
ID Description Score Start End Superfamily
2vtbD03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9685 306 426 1.10.579.10
1u3dA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9681 4 127 3.40.50.620
1owoA03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9609 291 469 1.10.579.10
2e0iC03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9576 291 467 1.10.579.10
1owoA03 Mainly Alpha;Orthogonal Bundle;DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3;DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.9503 291 469 1.10.579.10
ID Description Score Start End GO Terms
AF-B9BF68-F1-model_v4 deleted 0.9902 1 471
AF-B9BF68-F1-model_v4 deleted 0.986 1 471
AF-A0A2M7CUK5-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9841 1 178 GO:0003677
GO:0003904
GO:0009416
GO:0071949
AF-A0A3D2STY5-F1-model_v4 Deoxyribodipyrimidine photolyase 0.9772 286 468 GO:0003677
GO:0003904
GO:0006139
GO:0006950
GO:0009416
GO:0071949
AF-A0A2W5I9Y6-F1-model_v4 deleted 0.9737 315 467

Map