F339753
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 227 | 172 | 454 | 343 |
Family's Representative Sequence
| Representative Sequence | 3300005937|Ga0081455_10151874|Ga0081455_101518742 |
| Length | 371 |
| Sequence | MSLPNRLPQPQESRSLAAVGTTAASDPAHETATLDDLRSTDVVLTGDRPTGPLHLGHYAGSLRTRLALQGRCQQTLLIADLQALTDNAGRPAHVAHHVLDVALDYLAVGIDPSDTTIALQSQLPALAELTMLYLNFVTVARLERNPTVKAEIELRGFARDVPAGFLCYPASQAADITGVRATLVPVGDDQLPMLEQSNEIVRRVNRLTGAEVLPECRPLLTRTPRLPGIDGRKASKSLGNAIPLTASPREIRTLVRAMYTDPDHIRVSDPGRVEGNVVFAYLDAFDPDQDAVAELKAHYQRGGLGDAALKERLEVVLESLISPMREGRLAAERQRDRVREVLMEGTAVTRKRTQAVLDDVRRAFSLTDFSA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 2 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 3 | 3300003316 | Sugarcane root Sample L1 | Metagenome | Unclassified |
| 4 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 5 | 3300003856 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz | Metagenome | Rhizosphere |
| 6 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 9 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 11 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 13 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 24 | 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 27 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 28 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 29 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 30 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 31 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 33 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 34 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 35 | 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Metagenome | Rhizosphere |
| 36 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 37 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 38 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 39 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 40 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 42 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 43 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 48 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 49 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 50 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 54 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 55 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 56 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 57 | 3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025728 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 79 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 80 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 87 | 3300027312 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300030500 | Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) | Metagenome | Rhizosphere |
| 90 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 91 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 92 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 93 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 94 | 3300033442 | Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 | Metagenome | Nodule |
| 95 | 3300035116 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 | Metagenome | Rhizosphere |
| 96 | 3300035117 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 | Metagenome | Rhizosphere |
| 97 | 3300035170 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 | Metagenome | Rhizosphere |
| 98 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 99 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 100 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 101 | 3300046452 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046457 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046491 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046492 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 108 | 3300046501 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere | Metagenome | Rhizosphere |
| 109 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 110 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 111 | 3300046513 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere | Metagenome | Rhizosphere |
| 112 | 3300046515 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere | Metagenome | Rhizosphere |
| 113 | 3300046518 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere | Metagenome | Rhizosphere |
| 114 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046520 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046525 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046542 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046559 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300046674 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300046679 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300047470 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere | Metagenome | Rhizosphere |
| 129 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 130 | 3300048088 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere | Metagenome | Rhizosphere |
| 131 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 132 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 133 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 134 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 135 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 136 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 137 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 138 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 139 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 140 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 141 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 142 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 143 | 3300053077 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere | Metagenome | Rhizosphere |
| 144 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 145 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 146 | 3300053177 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere | Metagenome | Endosphere |
| 147 | 3300059423 | Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 | Metagenome | Rhizosphere |
| 148 | 2513237096 | Bradyrhizobium pachyrhizi USDA 3259 | Isolate | Nodule |
| 149 | 2513237137 | Bradyrhizobium elkanii USDA 94 | Isolate | Nodule |
| 150 | 2513237145 | Bradyrhizobium elkanii USDA 3254 | Isolate | Nodule |
| 151 | 2617270742 | Rhizobium miluonense HAMBI 2971 | Isolate | Nodule |
| 152 | 2643221665 | Acinetobacter sp. Root1280 | Isolate | Unclassified |
| 153 | 2648501241 | Vibrio splendidus UCD-SED7 | Isolate | Rhizosphere |
| 154 | 2651869818 | Vibrio splendidus UCD-SED10 | Isolate | Rhizosphere |
| 155 | 2744054655 | Acinetobacter sp. BMW17 | Isolate | Unclassified |
| 156 | 2775507266 | Rhizobium tropici PRF 81 | Isolate | Nodule |
| 157 | 2818991448 | Rhizobium miluonense 1234 | Isolate | Unclassified |
| 158 | 2842482326 | Rhizobium lusitanum SEMIA 4060 | Isolate | Nodule |
| 159 | 2906635258 | Bradyrhizobium sp. USDA 3458 | Isolate | Unclassified |
| 160 | 2906660503 | Bradyrhizobium brasilense UFLA 03-321 | Isolate | Unclassified |
| 161 | 2916699645 | Acinetobacter ursingii M3 | Isolate | Unclassified |
| 162 | 2928515477 | Acinetobacter bereziniae 1375 | Isolate | Rhizosphere |
| 163 | 2935837841 | Bradyrhizobium sp. RT4b | Isolate | Nodule |
| 164 | 2939615513 | Lactococcus lactis 1925 | Isolate | Rhizosphere |
| 165 | 3001267043 | Bacillus sp. FJAT-49870 | Isolate | Rhizosphere |
| 166 | 3005416602 | Rhizobium sp. P40RR-XXII | Isolate | Rhizosphere |
| 167 | 8002745576 | Marinomonas spartinae USM8 | Isolate | Rhizosphere |
| 168 | 8005314921 | Rhizobium sp. P28RR-XV | Isolate | Rhizosphere |
| 169 | 8005484373 | Rhizobium tropici SARCC-755 | Isolate | Nodule |
| 170 | 8005645114 | Rhizobium tropici IGFRI Rhizo-19 | Isolate | Rhizosphere |
| 171 | 8005682033 | Rhizobium dioscoreae S-93 | Isolate | Unclassified |
| 172 | 8022948649 | Bacillus endophyticus FH5 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 88.99 |
| Metatranscriptomes | 0 |
| Isolates | 11.01 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 2.64 |
| Nodule | 6.61 |
| Rhizoplane | 1.32 |
| Rhizosphere | 82.82 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 3.96 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0081455_10151874 | 3300005937 | Unclassified | 1784 |
| 2 | JGI24740J21852_10000136 | 3300001979 | Bacteria | 28016 |
| 3 | rootH1_10114100 | 3300003316 | Bacteria | 1644 |
| 4 | rootL2_10001293 | 3300003322 | Bacteria | 2973 |
| 5 | rootL2_10023701 | 3300003322 | Bacteria | 11422 |
| 6 | Ga0058692_1000016 | 3300003856 | Bacteria | 275897 |
| 7 | Ga0070658_10034623 | 3300005327 | Bacteria | 4064 |
| 8 | Ga0070658_10054724 | 3300005327 | Bacteria | 3240 |
| 9 | Ga0070658_10158749 | 3300005327 | Bacteria | 1896 |
| 10 | Ga0070676_10157492 | 3300005328 | Bacteria | 1459 |
| 11 | Ga0070683_100010787 | 3300005329 | Bacteria | 7864 |
| 12 | Ga0070683_100021631 | 3300005329 | Bacteria | 5741 |
| 13 | Ga0070683_100062648 | 3300005329 | Bacteria | 3458 |
| 14 | Ga0070683_100079083 | 3300005329 | Bacteria | 3077 |
| 15 | Ga0070683_100149504 | 3300005329 | Bacteria | 2214 |
| 16 | Ga0070666_10130381 | 3300005335 | Bacteria | 1747 |
| 17 | Ga0070680_100000728 | 3300005336 | Bacteria | 22927 |
| 18 | Ga0070680_100132766 | 3300005336 | Bacteria | 2084 |
| 19 | Ga0070660_100000988 | 3300005339 | Bacteria | 19062 |
| 20 | Ga0070660_100105088 | 3300005339 | Bacteria | 2240 |
| 21 | Ga0070660_100146947 | 3300005339 | Bacteria | 1894 |
| 22 | Ga0070660_100217284 | 3300005339 | Bacteria | 1553 |
| 23 | Ga0070689_100015847 | 3300005340 | Bacteria | 5505 |
| 24 | Ga0070661_100010624 | 3300005344 | Bacteria | 6405 |
| 25 | Ga0070661_100186456 | 3300005344 | Bacteria | 1580 |
| 26 | Ga0070668_100012199 | 3300005347 | Bacteria | 6401 |
| 27 | Ga0070669_100041800 | 3300005353 | Bacteria | 3335 |
| 28 | Ga0070675_100012485 | 3300005354 | Bacteria | 6658 |
| 29 | Ga0070675_100175842 | 3300005354 | Bacteria | 1848 |
| 30 | Ga0070674_100041902 | 3300005356 | Bacteria | 3107 |
| 31 | Ga0070673_100192429 | 3300005364 | Bacteria | 1753 |
| 32 | Ga0070659_100019678 | 3300005366 | Bacteria | 5120 |
| 33 | Ga0070659_100123253 | 3300005366 | Bacteria | 2101 |
| 34 | Ga0070659_100222285 | 3300005366 | Bacteria | 1559 |
| 35 | Ga0070667_100000473 | 3300005367 | Bacteria | 41228 |
| 36 | Ga0070667_100304014 | 3300005367 | Bacteria | 1436 |
| 37 | Ga0070714_100276219 | 3300005435 | Bacteria | 1560 |
| 38 | Ga0070711_100013925 | 3300005439 | Bacteria | 5059 |
| 39 | Ga0070711_100043940 | 3300005439 | Bacteria | 3030 |
| 40 | Ga0070694_100008991 | 3300005444 | Bacteria | 6119 |
| 41 | Ga0070663_100004456 | 3300005455 | Bacteria | 8237 |
| 42 | Ga0070662_100052764 | 3300005457 | Bacteria | 2941 |
| 43 | Ga0070681_10001603 | 3300005458 | Bacteria | 20122 |
| 44 | Ga0070681_10033309 | 3300005458 | Bacteria | 5172 |
| 45 | Ga0070681_10070878 | 3300005458 | Bacteria | 3450 |
| 46 | Ga0070679_100005158 | 3300005530 | Bacteria | 12086 |
| 47 | Ga0070679_100008582 | 3300005530 | Bacteria | 9630 |
| 48 | Ga0070679_100008710 | 3300005530 | Bacteria | 9565 |
| 49 | Ga0070684_100055177 | 3300005535 | Bacteria | 3462 |
| 50 | Ga0070684_100108127 | 3300005535 | Bacteria | 2492 |
| 51 | Ga0070672_100014627 | 3300005543 | Bacteria | 5566 |
| 52 | Ga0070693_100147102 | 3300005547 | Bacteria | 1489 |
| 53 | Ga0070665_100204350 | 3300005548 | Bacteria | 1976 |
| 54 | Ga0070664_100015283 | 3300005564 | Bacteria | 6275 |
| 55 | Ga0070664_100079435 | 3300005564 | Bacteria | 2824 |
| 56 | Ga0068857_100001958 | 3300005577 | Bacteria | 16631 |
| 57 | Ga0068854_100013232 | 3300005578 | Bacteria | 5408 |
| 58 | Ga0068851_10012021 | 3300005834 | Bacteria | 4073 |
| 59 | Ga0068851_10085694 | 3300005834 | Bacteria | 1651 |
| 60 | Ga0068862_100030336 | 3300005844 | Bacteria | 4556 |
| 61 | Ga0081540_1005137 | 3300005983 | Bacteria | 9802 |
| 62 | Ga0075365_10041082 | 3300006038 | Bacteria | 3019 |
| 63 | Ga0070712_100097622 | 3300006175 | Bacteria | 2166 |
| 64 | Ga0097621_100169127 | 3300006237 | Bacteria | 1883 |
| 65 | Ga0068865_100006304 | 3300006881 | Bacteria | 7226 |
| 66 | Ga0079104_1000412 | 3300006946 | Bacteria | 49253 |
| 67 | Ga0079104_1020870 | 3300006946 | Bacteria | 1793 |
| 68 | Ga0105240_10000005 | 3300009093 | Bacteria | 702630 |
| 69 | Ga0105242_10273826 | 3300009176 | Bacteria | 1530 |
| 70 | Ga0105248_10133565 | 3300009177 | Bacteria | 2800 |
| 71 | Ga0105248_10176140 | 3300009177 | Bacteria | 2410 |
| 72 | Ga0105248_10213476 | 3300009177 | Bacteria | 2174 |
| 73 | Ga0105237_10021788 | 3300009545 | Bacteria | 6583 |
| 74 | Ga0105238_10190682 | 3300009551 | Bacteria | 2026 |
| 75 | Ga0105249_10002585 | 3300009553 | Bacteria | 15664 |
| 76 | Ga0105249_10058092 | 3300009553 | Bacteria | 3546 |
| 77 | Ga0105239_10012288 | 3300010375 | Bacteria | 9536 |
| 78 | Ga0105239_10069765 | 3300010375 | Unclassified | 3860 |
| 79 | Ga0157371_10003856 | 3300013102 | Bacteria | 13380 |
| 80 | Ga0157371_10165497 | 3300013102 | Bacteria | 1579 |
| 81 | Ga0157369_10028849 | 3300013105 | Bacteria | 6138 |
| 82 | Ga0157374_10091120 | 3300013296 | Bacteria | 2907 |
| 83 | Ga0163162_10001950 | 3300013306 | Bacteria | 19370 |
| 84 | Ga0157372_10012861 | 3300013307 | Bacteria | 8922 |
| 85 | Ga0157372_10450449 | 3300013307 | Bacteria | 1500 |
| 86 | Ga0157375_10030576 | 3300013308 | Bacteria | 5080 |
| 87 | Ga0209646_1005005 | 3300025246 | Bacteria | 2354 |
| 88 | Ga0207656_10068268 | 3300025321 | Bacteria | 1575 |
| 89 | Ga0207655_1002021 | 3300025728 | Bacteria | 17148 |
| 90 | Ga0207655_1002092 | 3300025728 | Bacteria | 16734 |
| 91 | Ga0207647_10019089 | 3300025904 | Bacteria | 4617 |
| 92 | Ga0207645_10003480 | 3300025907 | Bacteria | 11924 |
| 93 | Ga0207705_10196821 | 3300025909 | Bacteria | 1526 |
| 94 | Ga0207707_10023025 | 3300025912 | Bacteria | 5449 |
| 95 | Ga0207707_10053061 | 3300025912 | Bacteria | 3529 |
| 96 | Ga0207707_10053165 | 3300025912 | Bacteria | 3526 |
| 97 | Ga0207693_10151409 | 3300025915 | Bacteria | 1825 |
| 98 | Ga0207660_10001476 | 3300025917 | Bacteria | 15825 |
| 99 | Ga0207660_10016165 | 3300025917 | Bacteria | 4936 |
| 100 | Ga0207660_10183252 | 3300025917 | Bacteria | 1627 |
| 101 | Ga0207657_10004511 | 3300025919 | Bacteria | 14702 |
| 102 | Ga0207657_10026143 | 3300025919 | Bacteria | 5370 |
| 103 | Ga0207657_10205133 | 3300025919 | Bacteria | 1584 |
| 104 | Ga0207649_10144151 | 3300025920 | Bacteria | 1633 |
| 105 | Ga0207652_10016286 | 3300025921 | Bacteria | 6068 |
| 106 | Ga0207652_10064854 | 3300025921 | Bacteria | 3161 |
| 107 | Ga0207652_10102942 | 3300025921 | Bacteria | 2524 |
| 108 | Ga0207652_10400304 | 3300025921 | Bacteria | 1239 |
| 109 | Ga0207681_10021326 | 3300025923 | Bacteria | 4116 |
| 110 | Ga0207650_10019417 | 3300025925 | Bacteria | 4775 |
| 111 | Ga0207659_10012847 | 3300025926 | Bacteria | 5346 |
| 112 | Ga0207690_10026810 | 3300025932 | Bacteria | 3633 |
| 113 | Ga0207706_10014453 | 3300025933 | Bacteria | 7154 |
| 114 | Ga0207686_10278287 | 3300025934 | Bacteria | 1234 |
| 115 | Ga0207691_10095860 | 3300025940 | Bacteria | 2653 |
| 116 | Ga0207711_10173454 | 3300025941 | Bacteria | 1958 |
| 117 | Ga0207689_10011587 | 3300025942 | Bacteria | 7553 |
| 118 | Ga0207661_10029095 | 3300025944 | Bacteria | 4240 |
| 119 | Ga0207661_10048205 | 3300025944 | Bacteria | 3384 |
| 120 | Ga0207661_10075512 | 3300025944 | Bacteria | 2766 |
| 121 | Ga0207679_10006178 | 3300025945 | Bacteria | 7564 |
| 122 | Ga0207679_10092395 | 3300025945 | Bacteria | 2344 |
| 123 | Ga0207679_10176770 | 3300025945 | Bacteria | 1763 |
| 124 | Ga0207712_10002268 | 3300025961 | Bacteria | 12481 |
| 125 | Ga0207712_10013892 | 3300025961 | Bacteria | 5164 |
| 126 | Ga0207640_10071006 | 3300025981 | Bacteria | 2344 |
| 127 | Ga0207658_10000130 | 3300025986 | Bacteria | 81577 |
| 128 | Ga0207658_10078911 | 3300025986 | Bacteria | 2517 |
| 129 | Ga0207678_10004253 | 3300026067 | Bacteria | 12837 |
| 130 | Ga0207708_10013050 | 3300026075 | Bacteria | 6199 |
| 131 | Ga0207674_10003070 | 3300026116 | Bacteria | 20656 |
| 132 | Ga0207674_10006667 | 3300026116 | Bacteria | 13560 |
| 133 | Ga0207675_100004072 | 3300026118 | Bacteria | 14150 |
| 134 | Ga0209281_1000344 | 3300027111 | Bacteria | 77878 |
| 135 | Ga0209281_1000438 | 3300027111 | Bacteria | 60833 |
| 136 | Ga0209281_1010073 | 3300027111 | Bacteria | 2184 |
| 137 | Ga0209281_1015954 | 3300027111 | Bacteria | 1555 |
| 138 | Ga0209371_1003457 | 3300027312 | Bacteria | 7668 |
| 139 | Ga0268266_10235578 | 3300028379 | Bacteria | 1688 |
| 140 | Ga0268256_1003260 | 3300030500 | Bacteria | 7468 |
| 141 | Ga0307413_10142087 | 3300031824 | Bacteria | 1660 |
| 142 | Ga0307410_10152221 | 3300031852 | Bacteria | 1723 |
| 143 | Ga0307412_10213554 | 3300031911 | Bacteria | 1474 |
| 144 | Ga0307416_100197244 | 3300032002 | Bacteria | 1906 |
| 145 | Ga0315911_1000003 | 3300033442 | Bacteria | 502217 |
| 146 | Ga0373945_0021159 | 3300035116 | Bacteria | 2233 |
| 147 | Ga0373953_0134465 | 3300035117 | Bacteria | 1056 |
| 148 | Ga0373943_0001849 | 3300035170 | Bacteria | 9563 |
| 149 | Ga0373935_0000180 | 3300035692 | Bacteria | 29664 |
| 150 | Ga0373937_0001376 | 3300036401 | Bacteria | 20333 |
| 151 | Ga0466963_0067051 | 3300044694 | Bacteria | 2408 |
| 152 | Ga0495617_041526 | 3300046452 | Bacteria | 1537 |
| 153 | Ga0495590_0010066 | 3300046457 | Unclassified | 3571 |
| 154 | Ga0495638_0000028 | 3300046460 | Bacteria | 330252 |
| 155 | Ga0495582_0015143 | 3300046473 | Unclassified | 4242 |
| 156 | Ga0495584_0034165 | 3300046491 | Bacteria | 2573 |
| 157 | Ga0495585_0003535 | 3300046492 | Bacteria | 10507 |
| 158 | Ga0495594_0080723 | 3300046499 | Bacteria | 1816 |
| 159 | Ga0495607_0000001 | 3300046501 | Bacteria | 1245328 |
| 160 | Ga0495606_0012152 | 3300046507 | Bacteria | 6943 |
| 161 | Ga0495610_0017588 | 3300046512 | Unclassified | 4071 |
| 162 | Ga0495616_0121831 | 3300046513 | Unclassified | 1203 |
| 163 | Ga0495620_0012157 | 3300046515 | Unclassified | 4462 |
| 164 | Ga0495620_0027555 | 3300046515 | Bacteria | 2657 |
| 165 | Ga0495631_0000292 | 3300046518 | Bacteria | 34977 |
| 166 | Ga0495632_0020673 | 3300046519 | Bacteria | 3559 |
| 167 | Ga0495637_0000484 | 3300046520 | Bacteria | 28973 |
| 168 | Ga0495643_0019632 | 3300046522 | Bacteria | 3907 |
| 169 | Ga0495663_0017611 | 3300046525 | Bacteria | 2029 |
| 170 | Ga0495666_0106013 | 3300046526 | Bacteria | 1322 |
| 171 | Ga0495597_0001965 | 3300046542 | Bacteria | 13806 |
| 172 | Ga0495633_0003679 | 3300046558 | Bacteria | 10129 |
| 173 | Ga0495667_0000491 | 3300046559 | Bacteria | 25240 |
| 174 | Ga0495668_0005792 | 3300046616 | Bacteria | 8259 |
| 175 | Ga0495668_0104209 | 3300046616 | Unclassified | 1552 |
| 176 | Ga0495625_0168264 | 3300046660 | Bacteria | 1464 |
| 177 | Ga0495588_0230662 | 3300046674 | Bacteria | 977 |
| 178 | Ga0495623_0013166 | 3300046679 | Bacteria | 5362 |
| 179 | Ga0495670_0000001 | 3300046691 | Bacteria | 1556780 |
| 180 | Ga0495672_0000008 | 3300047320 | Bacteria | 568137 |
| 181 | Ga0495672_0002279 | 3300047320 | Bacteria | 17817 |
| 182 | Ga0495681_0020407 | 3300047470 | Bacteria | 3597 |
| 183 | Ga0495686_0004853 | 3300047472 | Bacteria | 10848 |
| 184 | Ga0495602_0027920 | 3300048088 | Bacteria | 5413 |
| 185 | Ga0496104_0124385 | 3300048907 | Bacteria | 2476 |
| 186 | Ga0496114_0100996 | 3300048917 | Bacteria | 2462 |
| 187 | Ga0496115_0456989 | 3300048918 | Unclassified | 1031 |
| 188 | Ga0496117_0000060 | 3300048920 | Bacteria | 258500 |
| 189 | Ga0496124_0014060 | 3300048927 | Bacteria | 7764 |
| 190 | Ga0496126_0000056 | 3300048929 | Bacteria | 286295 |
| 191 | Ga0496126_0057597 | 3300048929 | Bacteria | 3506 |
| 192 | Ga0495678_005307 | 3300049459 | Bacteria | 7151 |
| 193 | Ga0501038_0170518 | 3300049574 | Bacteria | 1762 |
| 194 | Ga0501076_0066811 | 3300049592 | Bacteria | 2871 |
| 195 | Ga0501044_0328084 | 3300049823 | Bacteria | 1454 |
| 196 | nmdc:mga03683_25192_c1 | 3300050489 | Bacteria | 2334 |
| 197 | nmdc:mga0yw44_35839_c1 | 3300050492 | Bacteria | 2919 |
| 198 | Ga0495601_0213633 | 3300053077 | Bacteria | 1260 |
| 199 | Ga0500618_011163 | 3300053125 | Bacteria | 2391 |
| 200 | Ga0500622_0077571 | 3300053156 | Bacteria | 1669 |
| 201 | Ga0500636_0158761 | 3300053177 | Bacteria | 1235 |
| 202 | Ga0590074_007921 | 3300059423 | Bacteria | 1771 |
| 203 | 2513657239 | 2513237096 | Bacteria | 8722461 |
| 204 | 2513857706 | 2513237137 | Bacteria | 9558895 |
| 205 | 2513919247 | 2513237145 | Bacteria | 8979722 |
| 206 | 2617385165 | 2617270742 | Bacteria | 6808054 |
| 207 | 2644365224 | 2643221665 | Bacteria | 4699229 |
| 208 | 2649120488 | 2648501241 | Bacteria | 5312320 |
| 209 | 2652973062 | 2651869818 | Bacteria | 5864031 |
| 210 | 2745160864 | 2744054655 | Bacteria | 3552603 |
| 211 | 2778174010 | 2775507266 | Bacteria | 7392367 |
| 212 | 2819612802 | 2818991448 | Bacteria | 6772224 |
| 213 | 2842484843 | 2842482326 | Bacteria | 7212537 |
| 214 | 2906640343 | 2906635258 | Bacteria | 8601019 |
| 215 | 2906667263 | 2906660503 | Bacteria | 8595048 |
| 216 | 2916701552 | 2916699645 | Bacteria | 3568996 |
| 217 | 2928515743 | 2928515477 | Bacteria | 4448421 |
| 218 | 2935843433 | 2935837841 | Bacteria | 9454360 |
| 219 | 2939616635 | 2939615513 | Bacteria | 2384962 |
| 220 | 3001267833 | 3001267043 | Bacteria | 4823521 |
| 221 | 3005420112 | 3005416602 | Bacteria | 7064308 |
| 222 | 8002747413 | 8002745576 | Bacteria | 4840272 |
| 223 | 8005317063 | 8005314921 | Bacteria | 7072929 |
| 224 | 8005485142 | 8005484373 | Bacteria | 6297373 |
| 225 | 8005645305 | 8005645114 | Bacteria | 6950293 |
| 226 | 8005683194 | 8005682033 | Bacteria | 6726518 |
| 227 | 8022952216 | 8022948649 | Bacteria | 5366783 |
| 228 | Ga0081455_10151874 | |||
| 229 | JGI24740J21852_10000136 | |||
| 230 | rootH1_10114100 | |||
| 231 | rootL2_10001293 | |||
| 232 | rootL2_10023701 | |||
| 233 | Ga0058692_1000016 | |||
| 234 | Ga0070658_10034623 | |||
| 235 | Ga0070658_10054724 | |||
| 236 | Ga0070658_10158749 | |||
| 237 | Ga0070676_10157492 | |||
| 238 | Ga0070683_100010787 | |||
| 239 | Ga0070683_100021631 | |||
| 240 | Ga0070683_100062648 | |||
| 241 | Ga0070683_100079083 | |||
| 242 | Ga0070683_100149504 | |||
| 243 | Ga0070666_10130381 | |||
| 244 | Ga0070680_100000728 | |||
| 245 | Ga0070680_100132766 | |||
| 246 | Ga0070660_100000988 | |||
| 247 | Ga0070660_100105088 | |||
| 248 | Ga0070660_100146947 | |||
| 249 | Ga0070660_100217284 | |||
| 250 | Ga0070689_100015847 | |||
| 251 | Ga0070661_100010624 | |||
| 252 | Ga0070661_100186456 | |||
| 253 | Ga0070668_100012199 | |||
| 254 | Ga0070669_100041800 | |||
| 255 | Ga0070675_100012485 | |||
| 256 | Ga0070675_100175842 | |||
| 257 | Ga0070674_100041902 | |||
| 258 | Ga0070673_100192429 | |||
| 259 | Ga0070659_100019678 | |||
| 260 | Ga0070659_100123253 | |||
| 261 | Ga0070659_100222285 | |||
| 262 | Ga0070667_100000473 | |||
| 263 | Ga0070667_100304014 | |||
| 264 | Ga0070714_100276219 | |||
| 265 | Ga0070711_100013925 | |||
| 266 | Ga0070711_100043940 | |||
| 267 | Ga0070694_100008991 | |||
| 268 | Ga0070663_100004456 | |||
| 269 | Ga0070662_100052764 | |||
| 270 | Ga0070681_10001603 | |||
| 271 | Ga0070681_10033309 | |||
| 272 | Ga0070681_10070878 | |||
| 273 | Ga0070679_100005158 | |||
| 274 | Ga0070679_100008582 | |||
| 275 | Ga0070679_100008710 | |||
| 276 | Ga0070684_100055177 | |||
| 277 | Ga0070684_100108127 | |||
| 278 | Ga0070672_100014627 | |||
| 279 | Ga0070693_100147102 | |||
| 280 | Ga0070665_100204350 | |||
| 281 | Ga0070664_100015283 | |||
| 282 | Ga0070664_100079435 | |||
| 283 | Ga0068857_100001958 | |||
| 284 | Ga0068854_100013232 | |||
| 285 | Ga0068851_10012021 | |||
| 286 | Ga0068851_10085694 | |||
| 287 | Ga0068862_100030336 | |||
| 288 | Ga0081540_1005137 | |||
| 289 | Ga0075365_10041082 | |||
| 290 | Ga0070712_100097622 | |||
| 291 | Ga0097621_100169127 | |||
| 292 | Ga0068865_100006304 | |||
| 293 | Ga0079104_1000412 | |||
| 294 | Ga0079104_1020870 | |||
| 295 | Ga0105240_10000005 | |||
| 296 | Ga0105242_10273826 | |||
| 297 | Ga0105248_10133565 | |||
| 298 | Ga0105248_10176140 | |||
| 299 | Ga0105248_10213476 | |||
| 300 | Ga0105237_10021788 | |||
| 301 | Ga0105238_10190682 | |||
| 302 | Ga0105249_10002585 | |||
| 303 | Ga0105249_10058092 | |||
| 304 | Ga0105239_10012288 | |||
| 305 | Ga0105239_10069765 | |||
| 306 | Ga0157371_10003856 | |||
| 307 | Ga0157371_10165497 | |||
| 308 | Ga0157369_10028849 | |||
| 309 | Ga0157374_10091120 | |||
| 310 | Ga0163162_10001950 | |||
| 311 | Ga0157372_10012861 | |||
| 312 | Ga0157372_10450449 | |||
| 313 | Ga0157375_10030576 | |||
| 314 | Ga0209646_1005005 | |||
| 315 | Ga0207656_10068268 | |||
| 316 | Ga0207655_1002021 | |||
| 317 | Ga0207655_1002092 | |||
| 318 | Ga0207647_10019089 | |||
| 319 | Ga0207645_10003480 | |||
| 320 | Ga0207705_10196821 | |||
| 321 | Ga0207707_10023025 | |||
| 322 | Ga0207707_10053061 | |||
| 323 | Ga0207707_10053165 | |||
| 324 | Ga0207693_10151409 | |||
| 325 | Ga0207660_10001476 | |||
| 326 | Ga0207660_10016165 | |||
| 327 | Ga0207660_10183252 | |||
| 328 | Ga0207657_10004511 | |||
| 329 | Ga0207657_10026143 | |||
| 330 | Ga0207657_10205133 | |||
| 331 | Ga0207649_10144151 | |||
| 332 | Ga0207652_10016286 | |||
| 333 | Ga0207652_10064854 | |||
| 334 | Ga0207652_10102942 | |||
| 335 | Ga0207652_10400304 | |||
| 336 | Ga0207681_10021326 | |||
| 337 | Ga0207650_10019417 | |||
| 338 | Ga0207659_10012847 | |||
| 339 | Ga0207690_10026810 | |||
| 340 | Ga0207706_10014453 | |||
| 341 | Ga0207686_10278287 | |||
| 342 | Ga0207691_10095860 | |||
| 343 | Ga0207711_10173454 | |||
| 344 | Ga0207689_10011587 | |||
| 345 | Ga0207661_10029095 | |||
| 346 | Ga0207661_10048205 | |||
| 347 | Ga0207661_10075512 | |||
| 348 | Ga0207679_10006178 | |||
| 349 | Ga0207679_10092395 | |||
| 350 | Ga0207679_10176770 | |||
| 351 | Ga0207712_10002268 | |||
| 352 | Ga0207712_10013892 | |||
| 353 | Ga0207640_10071006 | |||
| 354 | Ga0207658_10000130 | |||
| 355 | Ga0207658_10078911 | |||
| 356 | Ga0207678_10004253 | |||
| 357 | Ga0207708_10013050 | |||
| 358 | Ga0207674_10003070 | |||
| 359 | Ga0207674_10006667 | |||
| 360 | Ga0207675_100004072 | |||
| 361 | Ga0209281_1000344 | |||
| 362 | Ga0209281_1000438 | |||
| 363 | Ga0209281_1010073 | |||
| 364 | Ga0209281_1015954 | |||
| 365 | Ga0209371_1003457 | |||
| 366 | Ga0268266_10235578 | |||
| 367 | Ga0268256_1003260 | |||
| 368 | Ga0307413_10142087 | |||
| 369 | Ga0307410_10152221 | |||
| 370 | Ga0307412_10213554 | |||
| 371 | Ga0307416_100197244 | |||
| 372 | Ga0315911_1000003 | |||
| 373 | Ga0373945_0021159 | |||
| 374 | Ga0373953_0134465 | |||
| 375 | Ga0373943_0001849 | |||
| 376 | Ga0373935_0000180 | |||
| 377 | Ga0373937_0001376 | |||
| 378 | Ga0466963_0067051 | |||
| 379 | Ga0495617_041526 | |||
| 380 | Ga0495590_0010066 | |||
| 381 | Ga0495638_0000028 | |||
| 382 | Ga0495582_0015143 | |||
| 383 | Ga0495584_0034165 | |||
| 384 | Ga0495585_0003535 | |||
| 385 | Ga0495594_0080723 | |||
| 386 | Ga0495607_0000001 | |||
| 387 | Ga0495606_0012152 | |||
| 388 | Ga0495610_0017588 | |||
| 389 | Ga0495616_0121831 | |||
| 390 | Ga0495620_0012157 | |||
| 391 | Ga0495620_0027555 | |||
| 392 | Ga0495631_0000292 | |||
| 393 | Ga0495632_0020673 | |||
| 394 | Ga0495637_0000484 | |||
| 395 | Ga0495643_0019632 | |||
| 396 | Ga0495663_0017611 | |||
| 397 | Ga0495666_0106013 | |||
| 398 | Ga0495597_0001965 | |||
| 399 | Ga0495633_0003679 | |||
| 400 | Ga0495667_0000491 | |||
| 401 | Ga0495668_0005792 | |||
| 402 | Ga0495668_0104209 | |||
| 403 | Ga0495625_0168264 | |||
| 404 | Ga0495588_0230662 | |||
| 405 | Ga0495623_0013166 | |||
| 406 | Ga0495670_0000001 | |||
| 407 | Ga0495672_0000008 | |||
| 408 | Ga0495672_0002279 | |||
| 409 | Ga0495681_0020407 | |||
| 410 | Ga0495686_0004853 | |||
| 411 | Ga0495602_0027920 | |||
| 412 | Ga0496104_0124385 | |||
| 413 | Ga0496114_0100996 | |||
| 414 | Ga0496115_0456989 | |||
| 415 | Ga0496117_0000060 | |||
| 416 | Ga0496124_0014060 | |||
| 417 | Ga0496126_0000056 | |||
| 418 | Ga0496126_0057597 | |||
| 419 | Ga0495678_005307 | |||
| 420 | Ga0501038_0170518 | |||
| 421 | Ga0501076_0066811 | |||
| 422 | Ga0501044_0328084 | |||
| 423 | nmdc:mga03683_25192_c1 | |||
| 424 | nmdc:mga0yw44_35839_c1 | |||
| 425 | Ga0495601_0213633 | |||
| 426 | Ga0500618_011163 | |||
| 427 | Ga0500622_0077571 | |||
| 428 | Ga0500636_0158761 | |||
| 429 | Ga0590074_007921 | |||
| 430 | 2513657239 | |||
| 431 | 2513857706 | |||
| 432 | 2513919247 | |||
| 433 | 2617385165 | |||
| 434 | 2644365224 | |||
| 435 | 2649120488 | |||
| 436 | 2652973062 | |||
| 437 | 2745160864 | |||
| 438 | 2778174010 | |||
| 439 | 2819612802 | |||
| 440 | 2842484843 | |||
| 441 | 2906640343 | |||
| 442 | 2906667263 | |||
| 443 | 2916701552 | |||
| 444 | 2928515743 | |||
| 445 | 2935843433 | |||
| 446 | 2939616635 | |||
| 447 | 3001267833 | |||
| 448 | 3005420112 | |||
| 449 | 8002747413 | |||
| 450 | 8005317063 | |||
| 451 | 8005485142 | |||
| 452 | 8005645305 | |||
| 453 | 8005683194 | |||
| 454 | 8022952216 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2a4m-assembly1.cif.gz_A | structure of trprs ii bound to atp | 0.9838 | 8 | 337 |
| 2a4m-assembly1.cif.gz_A | structure of trprs ii bound to atp | 0.975 | 8 | 337 |
| 2g36-assembly1.cif.gz_A-2 | crystal structure of tryptophanyl-trna synthetase (ec 6.1.1.2) (tryptophan-trna ligase)(trprs) (tm0492) from thermotoga maritima at 2.50 a resolution | 0.9387 | 9 | 337 |
| 2g36-assembly1.cif.gz_A-2 | crystal structure of tryptophanyl-trna synthetase (ec 6.1.1.2) (tryptophan-trna ligase)(trprs) (tm0492) from thermotoga maritima at 2.50 a resolution | 0.9331 | 9 | 337 |
| 6ncr-assembly3.cif.gz_A | crystal structure of tryptophan-trna ligase from chlamydia trachomatis with bound l-tryptophan | 0.9305 | 7 | 335 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 1yi8B01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9828 | 8 | 337 | 3.40.50.620 |
| 1yi8C02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.9718 | 208 | 303 | 1.10.240.10 |
| 1yi8B01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs | 0.9693 | 8 | 337 | 3.40.50.620 |
| 1yi8A02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.9557 | 196 | 303 | 1.10.240.10 |
| 1yi8C02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.9525 | 208 | 303 | 1.10.240.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A059E0C2-F1-model_v4 | Tryptophan--tRNA ligase (EC 6.1.1.2) | 0.9874 | 47 | 338 |
GO:0004830
GO:0005524 GO:0005829 GO:0006436 |
| AF-A0A6A8QHC8-F1-model_v4 | Tryptophan--tRNA ligase (EC 6.1.1.2) | 0.9861 | 6 | 338 |
GO:0004830
GO:0005524 GO:0005829 GO:0006436 |
| AF-V0ARF8-F1-model_v4 | deleted | 0.9856 | 71 | 339 |
|
| AF-A0A4V2IEK9-F1-model_v4 | deleted | 0.9856 | 7 | 106 |
|
| AF-A0A7R9BUI2-F1-model_v4 | tryptophan--tRNA ligase (EC 6.1.1.2) (Tryptophanyl-tRNA synthetase) | 0.9831 | 4 | 315 |
GO:0004830
GO:0005524 GO:0005886 GO:0006436 |