F340398

General Info

Members Datasets Scaffolds Average Seq Length
227 186 198 438

Family's Representative Sequence

Representative Sequence 3300050509|nmdc:mga0qj67_4708_c1|nmdc:mga0qj67_4708_c1_2359_3918
Length 519
Sequence VQPRAATLAPSSTSENYRHRLSAAAVSPFVVAGQPGPAFREFLDRSACRRAPIVKLGEEQAGGLPVVVELMIVAHSQGRWCESKMRLRHTLLGLFSVALLGAAGFLYFAEQPELPVSKPPDKASFDGALIARGAELAMIGNCNVCHTGSDGLPYAGGRPLETPFGVIHATNITPDPETGMGAWSEAAFLRAMREGVRRDGAHLYPAFPYDHFTKVTPDDLRAIYAFLMTRDPVRARTPPNTVPFPFSVRPLIAAWKLLYFVPGEHKADPVLSAELNRGAYLTEGLAHCGACHTPRNSLGAERNDRYLGGGEVENWHAPALNATSTAPVPWTREQLFTYLRTGFVAPHGVAAGPMQPVVDNLATVAEQDVKAIAAYIGAILGPPTAGRQERGPQAEPTADSRALSGQDVIAAADGAVIYAGACALCHEASGQRFSAKGIHLASSKVITMPDARNLAHVILEGIAPPHASPAARMPGFADALSDSQVAALMTYLRRTFSSQPAWSGLEDKIREARRPPKGS

Samples

Sample ID Description Type Environment
1 2503198000 Mesorhizobium opportunistum WSM2075 Isolate Nodule
2 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
3 2513237101 Bradyrhizobium murdochi WSM1741 Isolate Nodule
4 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
5 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
6 2643221547 Pseudolabrys sp. Root1462 Isolate Unclassified
7 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
8 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
9 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
10 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
11 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
12 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
13 2874604998 Bradyrhizobium sp. LMTR 3 Isolate Nodule
14 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
15 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
16 2906610324
17 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
18 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
19 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
20 2922361189 Bradyrhizobium australiense WSM 1791 Isolate Nodule
21 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
22 2958064165 Mesorhizobium sp. SARCC-RB16n Isolate Unclassified
23 3005409236 Rhizobium sp. P32RR-XVIII Isolate Rhizosphere
24 3005483717 Bradyrhizobium agreste CNPSo 4010 Isolate Unclassified
25 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
26 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
27 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
28 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
29 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
30 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
31 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
32 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
33 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
34 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
35 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
36 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
37 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
38 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
39 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
40 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
41 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
42 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
43 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
44 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
45 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
48 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
49 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
50 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
51 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
52 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
53 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
54 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
55 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
56 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
57 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
58 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
59 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
60 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
61 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
62 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
63 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
65 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
66 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
67 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
68 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
69 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
70 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
71 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
72 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
73 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
74 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
75 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
76 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
77 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
78 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
79 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
80 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
81 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
82 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
83 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
84 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
85 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
86 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
87 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
88 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
89 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
91 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
92 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
107 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
108 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
109 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
110 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
111 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
114 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
115 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
116 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
117 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
118 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
119 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
120 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
121 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
122 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
123 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
124 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
125 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
126 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
127 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
128 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
129 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
130 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
131 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
132 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
133 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
134 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
135 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
136 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
137 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
138 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
139 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
140 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
141 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
142 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
143 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
144 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
145 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
146 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
147 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
148 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
149 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
150 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
151 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
152 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
153 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
154 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
155 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
156 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
157 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
163 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
164 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
167 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
168 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
169 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
170 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
171 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
172 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
173 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
174 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
175 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
176 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
177 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
178 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
179 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
180 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
181 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
182 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
183 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
184 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
185 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule
186 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 87.61
Metatranscriptomes 0
Isolates 12.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.89
Nodule 10.13
Rhizoplane 5.73
Rhizosphere 59.47
Stem 0
Stem Tuber 0
Unclassified 12.78

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25152J39213_1004841 3300002773 Bacteria 4117
2 JGI25151J46595_10034739 3300003187 Bacteria 1923
3 JGI25165J46597_1000025 3300003214 Bacteria 333075
4 Ga0055524_1007446 3300003775 Bacteria 4644
5 Ga0055528_1000299 3300003790 Bacteria 42145
6 Ga0065165_1007435 3300005262 Bacteria 5381
7 Ga0070666_10004067 3300005335 Bacteria 8879
8 Ga0070680_100068939 3300005336 Bacteria 2903
9 Ga0070668_100010908 3300005347 Bacteria 6762
10 Ga0070671_100000059 3300005355 Bacteria 73881
11 Ga0070667_100001194 3300005367 Bacteria 23634
12 Ga0070709_10000484 3300005434 Bacteria 23482
13 Ga0070709_10002461 3300005434 Bacteria 10023
14 Ga0070709_10026841 3300005434 Bacteria 3417
15 Ga0070714_100124780 3300005435 Bacteria 2294
16 Ga0070713_100030144 3300005436 Bacteria 4304
17 Ga0070711_100052113 3300005439 Bacteria 2815
18 Ga0070711_100065312 3300005439 Bacteria 2545
19 Ga0070694_100067926 3300005444 Bacteria 2448
20 Ga0070681_10023547 3300005458 Bacteria 6193
21 Ga0070697_100016999 3300005536 Bacteria 5720
22 Ga0070686_100033835 3300005544 Bacteria 3144
23 Ga0070695_100001246 3300005545 Bacteria 13992
24 Ga0070695_100002349 3300005545 Bacteria 10849
25 Ga0070665_100041201 3300005548 Bacteria 4641
26 Ga0068859_100001082 3300005617 Bacteria 27807
27 Ga0068859_100201312 3300005617 Bacteria 2076
28 Ga0068861_100114911 3300005719 Bacteria 2162
29 Ga0068863_100002098 3300005841 Bacteria 19754
30 Ga0068858_100045118 3300005842 Bacteria 4084
31 Ga0068860_100050548 3300005843 Bacteria 3957
32 Ga0068860_100053362 3300005843 Bacteria 3843
33 Ga0068862_100037130 3300005844 Bacteria 4128
34 Ga0081455_10000052 3300005937 Bacteria 123035
35 Ga0081540_1001146 3300005983 Bacteria 23395
36 Ga0070717_10033606 3300006028 Bacteria 4138
37 Ga0075368_10000892 3300006042 Bacteria 9263
38 Ga0070715_10047761 3300006163 Bacteria 1826
39 Ga0070715_10061468 3300006163 Bacteria 1649
40 Ga0070712_100004097 3300006175 Bacteria 8954
41 Ga0070712_100007069 3300006175 Bacteria 6999
42 Ga0075367_10000085 3300006178 Bacteria 25058
43 Ga0075428_100175596 3300006844 Bacteria 2320
44 Ga0075428_100213687 3300006844 Bacteria 2084
45 Ga0075430_100034912 3300006846 Bacteria 4269
46 Ga0075431_100053372 3300006847 Bacteria 4168
47 Ga0075434_100000800 3300006871 Bacteria 24901
48 Ga0097620_100001082 3300006931 Bacteria 27807
49 Ga0097620_100201312 3300006931 Bacteria 2076
50 Ga0099822_1001863 3300006943 Bacteria 25424
51 Ga0099823_1015869 3300006944 Bacteria 7438
52 Ga0075435_100016497 3300007076 Bacteria 5568
53 Ga0105250_10081998 3300009092 Unclassified 1308
54 Ga0105240_10035952 3300009093 Bacteria 6377
55 Ga0111539_10041530 3300009094 Bacteria 5529
56 Ga0111539_10048420 3300009094 Bacteria 5075
57 Ga0111539_10281563 3300009094 Bacteria 1935
58 Ga0105247_10000063 3300009101 Bacteria 125699
59 Ga0114129_10021812 3300009147 Bacteria 9091
60 Ga0114129_10040387 3300009147 Bacteria 6577
61 Ga0114129_10076985 3300009147 Bacteria 4642
62 Ga0105248_10039962 3300009177 Bacteria 5258
63 Ga0105249_10020661 3300009553 Bacteria 5887
64 Ga0157370_10079862 3300013104 Bacteria 3080
65 Ga0157369_10010118 3300013105 Bacteria 10764
66 Ga0157378_10002024 3300013297 Bacteria 18139
67 Ga0163162_10096832 3300013306 Bacteria 3039
68 Ga0163163_10004525 3300014325 Bacteria 11865
69 Ga0157380_10142459 3300014326 Bacteria 2061
70 Ga0157379_10027089 3300014968 Bacteria 5102
71 Ga0157379_10148991 3300014968 Bacteria 2111
72 Ga0213873_10000314 3300021358 Bacteria 8243
73 Ga0213872_10017536 3300021361 Bacteria 3307
74 Ga0213875_10001421 3300021388 Bacteria 15544
75 Ga0209148_1005135 3300025254 Bacteria 3059
76 Ga0209129_1001061 3300025258 Bacteria 16229
77 Ga0209129_1002684 3300025258 Bacteria 8377
78 Ga0209233_1000053 3300025261 Bacteria 444909
79 Ga0209673_1000054 3300025273 Bacteria 279116
80 Ga0209130_1011281 3300025284 Bacteria 2400
81 Ga0209025_1001054 3300025294 Bacteria 40193
82 Ga0209025_1004101 3300025294 Bacteria 12976
83 Ga0209025_1009873 3300025294 Bacteria 6569
84 Ga0209564_1004172 3300025295 Bacteria 9031
85 Ga0209564_1017714 3300025295 Bacteria 2758
86 Ga0209256_1000605 3300025299 Bacteria 49814
87 Ga0207710_10000171 3300025900 Bacteria 67017
88 Ga0207685_10027090 3300025905 Bacteria 2001
89 Ga0207699_10002286 3300025906 Bacteria 9050
90 Ga0207699_10016761 3300025906 Bacteria 3840
91 Ga0207707_10102177 3300025912 Bacteria 2506
92 Ga0207695_10295988 3300025913 Bacteria 1510
93 Ga0207693_10002393 3300025915 Bacteria 16281
94 Ga0207693_10004118 3300025915 Bacteria 12344
95 Ga0207700_10013731 3300025928 Bacteria 5283
96 Ga0207664_10024552 3300025929 Bacteria 4531
97 Ga0207664_10041018 3300025929 Bacteria 3604
98 Ga0207665_10001976 3300025939 Bacteria 13813
99 Ga0207711_10238888 3300025941 Unclassified 1666
100 Ga0207658_10013281 3300025986 Bacteria 5624
101 Ga0207703_10002881 3300026035 Bacteria 14646
102 Ga0207641_10002992 3300026088 Bacteria 15280
103 Ga0207675_100044017 3300026118 Bacteria 4169
104 Ga0209389_1000170 3300027296 Bacteria 52587
105 Ga0209589_1000017 3300027357 Bacteria 215546
106 Ga0209489_100018 3300027361 Bacteria 215546
107 Ga0209489_101554 3300027361 Bacteria 47275
108 Ga0209700_100028 3300027363 Bacteria 215546
109 Ga0209700_100041 3300027363 Bacteria 168380
110 Ga0209813_10000170 3300027866 Bacteria 21174
111 Ga0268265_10026560 3300028380 Bacteria 4121
112 Ga0268264_10032091 3300028381 Bacteria 4309
113 Ga0307511_10005825 3300030521 Bacteria 12459
114 Ga0307511_10013859 3300030521 Bacteria 7866
115 Ga0265331_10049249 3300031250 Bacteria 2024
116 Ga0307513_10048286 3300031456 Bacteria 4621
117 Ga0307516_10113303 3300031730 Bacteria 2510
118 Ga0315911_1000018 3300033442 Bacteria 152089
119 Ga0373927_0009698 3300035695 Bacteria 6458
120 Ga0373937_0054095 3300036401 Bacteria 3683
121 Ga0373937_0063843 3300036401 Bacteria 3387
122 Ga0395898_0010740 3300037466 Bacteria 9566
123 Ga0436364_0416519 3300037853 Bacteria 115750
124 Ga0436365_1368066 3300039437 Bacteria 5035
125 Ga0436360_0192702 3300039438 Bacteria 9450
126 Ga0436361_0050089 3300039447 Bacteria 2748
127 Ga0436363_0061614 3300039450 Bacteria 8409
128 Ga0436363_1373064 3300039450 Bacteria 1292
129 Ga0436362_0105480 3300039453 Bacteria 14435
130 Ga0466966_0019070 3300044684 Bacteria 4520
131 Ga0466968_0008143 3300044735 Bacteria 4008
132 Ga0466959_0022155 3300045049 Bacteria 4694
133 Ga0495592_0018102 3300046454 Bacteria 5353
134 Ga0495603_0010064 3300046455 Bacteria 5722
135 Ga0495638_0000395 3300046460 Bacteria 53823
136 Ga0495580_0042442 3300046472 Bacteria 3241
137 Ga0495585_0000040 3300046492 Bacteria 130615
138 Ga0495606_0002482 3300046507 Bacteria 21346
139 Ga0495586_0068854 3300046535 Bacteria 1931
140 Ga0495609_0000815 3300046538 Bacteria 23257
141 Ga0495611_0016623 3300046648 Bacteria 3144
142 Ga0495635_0033889 3300046663 Bacteria 3542
143 Ga0495581_0152281 3300047315 Bacteria 1351
144 Ga0495676_0046977 3300047321 Bacteria 3497
145 Ga0495676_0083481 3300047321 Bacteria 2414
146 Ga0495673_0014850 3300047469 Bacteria 4035
147 Ga0495686_0001105 3300047472 Bacteria 32027
148 Ga0495686_0004391 3300047472 Bacteria 11622
149 Ga0495614_0078352 3300048089 Bacteria 1430
150 Ga0496102_0029579 3300048905 Bacteria 4902
151 Ga0496104_0043698 3300048907 Bacteria 4208
152 Ga0496105_0021482 3300048908 Bacteria 5222
153 Ga0496106_0013556 3300048909 Bacteria 6019
154 Ga0496109_0407845 3300048912 Unclassified 1284
155 Ga0496110_0209152 3300048913 Bacteria 1773
156 Ga0496111_0009113 3300048914 Bacteria 6605
157 Ga0496111_0052736 3300048914 Bacteria 2937
158 Ga0496112_0010674 3300048915 Bacteria 8347
159 Ga0496112_0181197 3300048915 Bacteria 2071
160 Ga0496114_0339976 3300048917 Bacteria 1327
161 Ga0496116_0041828 3300048919 Bacteria 3140
162 Ga0496117_0024820 3300048920 Bacteria 4727
163 Ga0496118_0003937 3300048921 Bacteria 18161
164 Ga0496121_0000696 3300048924 Bacteria 62514
165 Ga0496121_0018061 3300048924 Bacteria 7141
166 Ga0496122_0049914 3300048925 Bacteria 3196
167 Ga0496123_0065528 3300048926 Bacteria 2308
168 Ga0496124_0006184 3300048927 Bacteria 13118
169 Ga0496125_0083880 3300048928 Bacteria 2422
170 Ga0496126_0061040 3300048929 Bacteria 3388
171 Ga0501036_0039525 3300049572 Bacteria 3992
172 Ga0501036_0043733 3300049572 Bacteria 3794
173 Ga0501037_0036624 3300049573 Bacteria 3615
174 Ga0501038_0053213 3300049574 Bacteria 3486
175 Ga0501039_0082736 3300049575 Bacteria 2499
176 Ga0501039_0202489 3300049575 Bacteria 1561
177 Ga0501083_0006918 3300049744 Bacteria 8053
178 Ga0501044_0016502 3300049823 Bacteria 7926
179 nmdc:mga06z11_197_c1 3300050494 Bacteria 24295
180 nmdc:mga04h51_600_c1 3300050495 Bacteria 8598
181 nmdc:mga05p37_31671_c1 3300050507 Bacteria 6461
182 nmdc:mga05p37_370623_c1 3300050507 Bacteria 1680
183 nmdc:mga0qj67_191064_c1 3300050509 Bacteria 1664
184 nmdc:mga0qj67_4708_c1 3300050509 Bacteria 9912
185 nmdc:mga0qj67_7651_c1 3300050509 Bacteria 4622
186 nmdc:mga0qj67_80387_c1 3300050509 Bacteria 2611
187 nmdc:mga06r32_32303_c1 3300050510 Bacteria 4924
188 nmdc:mga06r32_41261_c1 3300050510 Bacteria 4384
189 nmdc:mga06r32_81099_c1 3300050510 Bacteria 3159
190 nmdc:mga08y16_16164_c1 3300050511 Bacteria 6666
191 nmdc:mga08y16_239008_c1 3300050511 Bacteria 1878
192 nmdc:mga0n895_215_c1 3300050512 Bacteria 36244
193 nmdc:mga0a205_10169_c1 3300050515 Bacteria 8640
194 Ga0495601_0036874 3300053077 Bacteria 3055
195 Ga0500593_002088 3300053117 Bacteria 7253
196 Ga0500568_0000523 3300053139 Bacteria 28340
197 Ga0500616_0014050 3300053153 Bacteria 4616
198 Ga0500636_0008533 3300053177 Bacteria 5940

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013306 Ga0163162_10096832 Ga0163162_100968322 341
2 3300009092 Ga0105250_10081998 Ga0105250_100819982 342
3 3300009101 Ga0105247_10000063 Ga0105247_1000006349 342
4 3300009177 Ga0105248_10039962 Ga0105248_100399622 342
5 3300014968 Ga0157379_10027089 Ga0157379_100270892 342
6 3300048912 Ga0496109_0407845 Ga0496109_0407845_56_1084 342
7 3300048915 Ga0496112_0010674 Ga0496112_0010674_4950_5978 342
8 3300048924 Ga0496121_0000696 Ga0496121_0000696_47405_48433 342
9 3300039450 Ga0436363_1373064 Ga0436363_1373064_90_1190 357
10 iso_pu_bacteria 2841957949 2841961795 360
11 3300048089 Ga0495614_0078352 Ga0495614_0078352_252_1352 363
12 3300048914 Ga0496111_0052736 Ga0496111_0052736_462_1712 393
13 3300025294 Ga0209025_1009873 Ga0209025_10098736 406
14 3300048917 Ga0496114_0339976 Ga0496114_0339976_19_1239 406
15 3300035695 Ga0373927_0009698 Ga0373927_0009698_4107_5411 407
16 3300005336 Ga0070680_100068939 Ga0070680_1000689393 410
17 3300005458 Ga0070681_10023547 Ga0070681_100235473 410
18 3300025912 Ga0207707_10102177 Ga0207707_101021771 410
19 3300005439 Ga0070711_100052113 Ga0070711_1000521134 413
20 3300046492 Ga0495585_0000040 Ga0495585_0000040_73714_75036 413
21 3300049572 Ga0501036_0043733 Ga0501036_0043733_1758_3029 413
22 3300049573 Ga0501037_0036624 Ga0501037_0036624_1835_3106 413
23 3300049575 Ga0501039_0202489 Ga0501039_0202489_279_1550 413
24 3300049823 Ga0501044_0016502 Ga0501044_0016502_4685_5956 413
25 3300036401 Ga0373937_0063843 Ga0373937_0063843_1328_2629 416
26 3300046535 Ga0495586_0068854 Ga0495586_0068854_253_1572 416
27 3300005335 Ga0070666_10004067 Ga0070666_100040676 417
28 3300005355 Ga0070671_100000059 Ga0070671_10000005941 417
29 3300005367 Ga0070667_100001194 Ga0070667_10000119416 417
30 3300005544 Ga0070686_100033835 Ga0070686_1000338352 417
31 3300005548 Ga0070665_100041201 Ga0070665_1000412012 417
32 3300005617 Ga0068859_100001082 Ga0068859_1000010822 417
33 3300005841 Ga0068863_100002098 Ga0068863_1000020986 417
34 3300005842 Ga0068858_100045118 Ga0068858_1000451184 417
35 3300005843 Ga0068860_100053362 Ga0068860_1000533623 417
36 3300006931 Ga0097620_100001082 Ga0097620_10000108226 417
37 3300009553 Ga0105249_10020661 Ga0105249_100206612 417
38 3300014325 Ga0163163_10004525 Ga0163163_100045259 417
39 3300025900 Ga0207710_10000171 Ga0207710_1000017136 417
40 3300025941 Ga0207711_10238888 Ga0207711_102388881 417
41 3300025986 Ga0207658_10013281 Ga0207658_100132813 417
42 3300026035 Ga0207703_10002881 Ga0207703_1000288111 417
43 3300026088 Ga0207641_10002992 Ga0207641_100029922 417
44 3300028381 Ga0268264_10032091 Ga0268264_100320913 417
45 3300046538 Ga0495609_0000815 Ga0495609_0000815_5737_7086 417
46 3300047315 Ga0495581_0152281 Ga0495581_0152281_79_1341 417
47 3300039437 Ga0436365_1368066 Ga0436365_1368066_1342_2613 418
48 iso_pu_bacteria 3005483717 3005486979 419
49 3300014968 Ga0157379_10148991 Ga0157379_101489912 420
50 3300030521 Ga0307511_10005825 Ga0307511_100058258 420
51 iso_pu_bacteria 2906610324 2906615777 420
52 3300005937 Ga0081455_10000052 Ga0081455_10000052102 421
53 3300039447 Ga0436361_0050089 Ga0436361_0050089_1223_2518 422
54 3300013297 Ga0157378_10002024 Ga0157378_100020249 423
55 iso_pu_bacteria 2883291878 2883292654 423
56 3300005444 Ga0070694_100067926 Ga0070694_1000679263 424
57 3300005545 Ga0070695_100002349 Ga0070695_1000023496 424
58 iso_pu_bacteria 2935916978 2935918200 424
59 3300005434 Ga0070709_10026841 Ga0070709_100268413 425
60 3300006028 Ga0070717_10033606 Ga0070717_100336063 425
61 3300006844 Ga0075428_100213687 Ga0075428_1002136872 425
62 3300021358 Ga0213873_10000314 Ga0213873_100003142 425
63 3300021361 Ga0213872_10017536 Ga0213872_100175361 425
64 3300025906 Ga0207699_10016761 Ga0207699_100167613 425
65 3300025928 Ga0207700_10013731 Ga0207700_100137312 425
66 3300025939 Ga0207665_10001976 Ga0207665_100019763 425
67 3300039438 Ga0436360_0192702 Ga0436360_0192702_6392_7696 425
68 3300039453 Ga0436362_0105480 Ga0436362_0105480_3236_4540 425
69 3300044735 Ga0466968_0008143 Ga0466968_0008143_857_2161 425
70 iso_pu_bacteria 641228493 641337237 426
71 iso_pu_bacteria 643348555 643392596 426
72 3300021388 Ga0213875_10001421 Ga0213875_100014212 427
73 3300037853 Ga0436364_0416519 Ga0436364_0416519_100468_101769 427
74 3300005983 Ga0081540_1001146 Ga0081540_100114617 429
75 3300026118 Ga0207675_100044017 Ga0207675_1000440172 429
76 3300033442 Ga0315911_1000018 Ga0315911_100001858 429
77 3300044684 Ga0466966_0019070 Ga0466966_0019070_2845_4182 429
78 3300045049 Ga0466959_0022155 Ga0466959_0022155_1714_3051 429
79 3300046648 Ga0495611_0016623 Ga0495611_0016623_261_1583 429
80 3300047321 Ga0495676_0046977 Ga0495676_0046977_1772_3094 429
81 3300047469 Ga0495673_0014850 Ga0495673_0014850_495_1817 429
82 3300053177 Ga0500636_0008533 Ga0500636_0008533_1585_2925 429
83 3300006844 Ga0075428_100175596 Ga0075428_1001755962 430
84 3300006846 Ga0075430_100034912 Ga0075430_1000349122 430
85 3300006847 Ga0075431_100053372 Ga0075431_1000533722 430
86 3300006871 Ga0075434_100000800 Ga0075434_10000080013 430
87 3300007076 Ga0075435_100016497 Ga0075435_1000164972 430
88 3300009094 Ga0111539_10041530 Ga0111539_100415303 430
89 3300009094 Ga0111539_10048420 Ga0111539_100484202 430
90 3300009094 Ga0111539_10281563 Ga0111539_102815632 430
91 3300046455 Ga0495603_0010064 Ga0495603_0010064_1392_2771 430
92 3300046472 Ga0495580_0042442 Ga0495580_0042442_1578_2957 430
93 3300047321 Ga0495676_0083481 Ga0495676_0083481_933_2312 430
94 3300050509 nmdc:mga0qj67_4708_c1 nmdc:mga0qj67_4708_c1_2359_3918 430
95 3300050509 nmdc:mga0qj67_7651_c1 nmdc:mga0qj67_7651_c1_2732_4039 430
96 3300050510 nmdc:mga06r32_32303_c1 nmdc:mga06r32_32303_c1_635_1942 430
97 3300050510 nmdc:mga06r32_41261_c1 nmdc:mga06r32_41261_c1_2221_3780 430
98 3300050511 nmdc:mga08y16_16164_c1 nmdc:mga08y16_16164_c1_2464_3816 430
99 3300050511 nmdc:mga08y16_239008_c1 nmdc:mga08y16_239008_c1_374_1684 430
100 3300050512 nmdc:mga0n895_215_c1 nmdc:mga0n895_215_c1_5909_7219 430
101 3300050515 nmdc:mga0a205_10169_c1 nmdc:mga0a205_10169_c1_1519_2829 430
102 3300009147 Ga0114129_10040387 Ga0114129_100403871 431
103 3300050507 nmdc:mga05p37_31671_c1 nmdc:mga05p37_31671_c1_3674_5008 431
104 3300050509 nmdc:mga0qj67_191064_c1 nmdc:mga0qj67_191064_c1_288_1622 431
105 3300036401 Ga0373937_0054095 Ga0373937_0054095_1238_2560 432
106 3300046454 Ga0495592_0018102 Ga0495592_0018102_3816_5138 432
107 3300046663 Ga0495635_0033889 Ga0495635_0033889_1376_2698 432
108 3300053077 Ga0495601_0036874 Ga0495601_0036874_1476_2798 432
109 3300006163 Ga0070715_10047761 Ga0070715_100477611 433
110 3300009147 Ga0114129_10076985 Ga0114129_100769853 433
111 3300014326 Ga0157380_10142459 Ga0157380_101424591 433
112 3300025905 Ga0207685_10027090 Ga0207685_100270902 433
113 iso_pu_bacteria 2643221547 2643755017 437
114 3300031250 Ga0265331_10049249 Ga0265331_100492491 438
115 3300006943 Ga0099822_1001863 Ga0099822_10018639 439
116 3300006944 Ga0099823_1015869 Ga0099823_10158693 439
117 3300027296 Ga0209389_1000170 Ga0209389_100017031 439
118 3300027357 Ga0209589_1000017 Ga0209589_100001750 439
119 3300027361 Ga0209489_100018 Ga0209489_10001850 439
120 3300027361 Ga0209489_101554 Ga0209489_10155419 439
121 3300027363 Ga0209700_100028 Ga0209700_10002850 439
122 3300027363 Ga0209700_100041 Ga0209700_10004151 439
123 iso_pu_bacteria 8056689827 8056694895 439
124 3300005617 Ga0068859_100201312 Ga0068859_1002013122 440
125 3300005719 Ga0068861_100114911 Ga0068861_1001149113 440
126 3300005843 Ga0068860_100050548 Ga0068860_1000505487 440
127 3300005844 Ga0068862_100037130 Ga0068862_1000371307 440
128 3300006042 Ga0075368_10000892 Ga0075368_100008921 440
129 3300006178 Ga0075367_10000085 Ga0075367_100000857 440
130 3300006931 Ga0097620_100201312 Ga0097620_1002013122 440
131 3300025254 Ga0209148_1005135 Ga0209148_10051353 440
132 3300027866 Ga0209813_10000170 Ga0209813_1000017031 440
133 3300028380 Ga0268265_10026560 Ga0268265_100265607 440
134 3300046507 Ga0495606_0002482 Ga0495606_0002482_9819_11195 440
135 3300050494 nmdc:mga06z11_197_c1 nmdc:mga06z11_197_c1_13660_14988 440
136 3300050495 nmdc:mga04h51_600_c1 nmdc:mga04h51_600_c1_1713_3041 440
137 3300009147 Ga0114129_10021812 Ga0114129_100218128 441
138 3300050507 nmdc:mga05p37_370623_c1 nmdc:mga05p37_370623_c1_108_1442 441
139 3300050509 nmdc:mga0qj67_80387_c1 nmdc:mga0qj67_80387_c1_621_1955 441
140 3300050510 nmdc:mga06r32_81099_c1 nmdc:mga06r32_81099_c1_476_1810 441
141 3300005434 Ga0070709_10002461 Ga0070709_100024614 442
142 3300005435 Ga0070714_100124780 Ga0070714_1001247802 442
143 3300005436 Ga0070713_100030144 Ga0070713_1000301442 442
144 3300005439 Ga0070711_100065312 Ga0070711_1000653123 442
145 3300006163 Ga0070715_10061468 Ga0070715_100614682 442
146 3300006175 Ga0070712_100007069 Ga0070712_1000070696 442
147 3300025906 Ga0207699_10002286 Ga0207699_100022865 442
148 3300025915 Ga0207693_10004118 Ga0207693_100041183 442
149 3300025929 Ga0207664_10041018 Ga0207664_100410182 442
150 3300048928 Ga0496125_0083880 Ga0496125_0083880_378_1709 442
151 iso_pu_bacteria 2513237096 2513658162 442
152 iso_pu_bacteria 2513237145 2513920346 442
153 iso_pu_bacteria 2517572143 2517889233 442
154 iso_pu_bacteria 2667528175 2671121483 442
155 iso_pu_bacteria 2906635258 2906635424 442
156 iso_pu_bacteria 2906660503 2906668555 442
157 iso_pu_bacteria 2513237101 2513694977 444
158 iso_pu_bacteria 2728368998 2728754734 444
159 iso_pu_bacteria 2791355197 2793073253 445
160 iso_pu_bacteria 2874604998 2874610415 445
161 iso_pu_bacteria 2922361189 2922363388 445
162 iso_pu_bacteria 8006964411 8006968258 445
163 iso_pu_bacteria 8006994254 8007000773 445
164 3300049572 Ga0501036_0039525 Ga0501036_0039525_1354_2694 446
165 3300049574 Ga0501038_0053213 Ga0501038_0053213_947_2287 446
166 3300049575 Ga0501039_0082736 Ga0501039_0082736_1008_2348 446
167 3300049744 Ga0501083_0006918 Ga0501083_0006918_4471_5811 446
168 3300005536 Ga0070697_100016999 Ga0070697_1000169993 447
169 3300005545 Ga0070695_100001246 Ga0070695_10000124612 447
170 3300053117 Ga0500593_002088 Ga0500593_002088_3077_4450 447
171 3300030521 Ga0307511_10013859 Ga0307511_100138599 448
172 3300048909 Ga0496106_0013556 Ga0496106_0013556_2565_3914 448
173 3300048919 Ga0496116_0041828 Ga0496116_0041828_1313_2662 448
174 3300048920 Ga0496117_0024820 Ga0496117_0024820_824_2173 448
175 3300048921 Ga0496118_0003937 Ga0496118_0003937_8818_10167 448
176 3300048924 Ga0496121_0018061 Ga0496121_0018061_4423_5772 448
177 3300048927 Ga0496124_0006184 Ga0496124_0006184_369_1718 448
178 3300048929 Ga0496126_0061040 Ga0496126_0061040_670_2019 448
179 3300046460 Ga0495638_0000395 Ga0495638_0000395_23769_25121 450
180 3300053139 Ga0500568_0000523 Ga0500568_0000523_3250_4602 450
181 3300053153 Ga0500616_0014050 Ga0500616_0014050_2526_3878 450
182 3300005434 Ga0070709_10000484 Ga0070709_100004844 451
183 3300006175 Ga0070712_100004097 Ga0070712_1000040976 451
184 3300025915 Ga0207693_10002393 Ga0207693_1000239314 451
185 3300025929 Ga0207664_10024552 Ga0207664_100245524 451
186 3300048915 Ga0496112_0181197 Ga0496112_0181197_104_1459 451
187 iso_pu_bacteria 2503198000 2503200614 451
188 3300039450 Ga0436363_0061614 Ga0436363_0061614_3197_4558 452
189 3300048905 Ga0496102_0029579 Ga0496102_0029579_2787_4151 454
190 3300048907 Ga0496104_0043698 Ga0496104_0043698_990_2354 454
191 3300048913 Ga0496110_0209152 Ga0496110_0209152_278_1642 454
192 3300048914 Ga0496111_0009113 Ga0496111_0009113_4416_5780 454
193 3300048925 Ga0496122_0049914 Ga0496122_0049914_638_2002 454
194 3300048926 Ga0496123_0065528 Ga0496123_0065528_866_2230 454
195 iso_pu_bacteria 2765235802 2765467309 454
196 iso_pu_bacteria 2904578770 2904580309 454
197 iso_pu_bacteria 2919119836 2919120015 454
198 iso_pu_bacteria 2958064165 2958069573 454
199 3300009093 Ga0105240_10035952 Ga0105240_100359523 455
200 3300013104 Ga0157370_10079862 Ga0157370_100798621 455
201 3300013105 Ga0157369_10010118 Ga0157369_100101183 455
202 3300025913 Ga0207695_10295988 Ga0207695_102959882 455
203 3300037466 Ga0395898_0010740 Ga0395898_0010740_6924_8297 455
204 iso_pu_bacteria 3005409236 3005412846 455
205 3300005347 Ga0070668_100010908 Ga0070668_1000109083 456
206 3300025258 Ga0209129_1002684 Ga0209129_10026844 456
207 3300025295 Ga0209564_1004172 Ga0209564_10041725 456
208 3300048908 Ga0496105_0021482 Ga0496105_0021482_3539_4909 456
209 3300003214 JGI25165J46597_1000025 JGI25165J46597_100002588 457
210 3300025261 Ga0209233_1000053 Ga0209233_1000053292 457
211 3300031456 Ga0307513_10048286 Ga0307513_100482863 459
212 3300031730 Ga0307516_10113303 Ga0307516_101133033 459
213 3300047472 Ga0495686_0001105 Ga0495686_0001105_5622_7040 461
214 3300047472 Ga0495686_0004391 Ga0495686_0004391_1594_2979 461
215 iso_pu_bacteria 2848858292 2848860217 462
216 3300003187 JGI25151J46595_10034739 JGI25151J46595_100347392 465
217 3300003775 Ga0055524_1007446 Ga0055524_10074463 465
218 3300003790 Ga0055528_1000299 Ga0055528_100029937 465
219 3300005262 Ga0065165_1007435 Ga0065165_10074354 465
220 3300025258 Ga0209129_1001061 Ga0209129_100106112 465
221 3300025273 Ga0209673_1000054 Ga0209673_1000054172 465
222 3300025284 Ga0209130_1011281 Ga0209130_10112813 465
223 3300025294 Ga0209025_1001054 Ga0209025_10010549 465
224 3300025294 Ga0209025_1004101 Ga0209025_10041016 465
225 3300025295 Ga0209564_1017714 Ga0209564_10177143 465
226 3300025299 Ga0209256_1000605 Ga0209256_100060513 465
227 3300002773 JGI25152J39213_1004841 JGI25152J39213_10048414 467

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00034

Cytochrom_C

Cytochrome c

130

231

0.85

PF00034

Cytochrom_C

Cytochrome c

411

496

0.81

PF13442

Cytochrome_CBB3

Cytochrome C oxidase, cbb3-type, subunit III

409

492

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
8gy3-assembly1.cif.gz_A cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans 0.8902 8 439
8gy3-assembly1.cif.gz_A cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans 0.863 8 439
7w2j-assembly1.cif.gz_C cryo-em structure of membrane-bound fructose dehydrogenase from gluconobacter japonicus 0.8307 49 439
8gy2-assembly1.cif.gz_B cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans 0.8169 41 445
8jek-assembly1.cif.gz_C cryo-em structure of k-ferricyanide oxidized membrane-bound fructose dehydrogenase from gluconobacter japonicus 0.7873 48 459
ID Description Score Start End Superfamily
4eifA00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.6794 338 420 1.10.760.10
4eifA00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.6366 338 420 1.10.760.10
4eicA00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.5392 338 425 1.10.760.10
4eicA00 Mainly Alpha;Orthogonal Bundle;Cytochrome Bc1 Complex; Chain D, domain 2;Cytochrome c-like domain 0.5079 338 425 1.10.760.10
af_O06418_206_487_3.20.20.140 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Metal-dependent hydrolases 0.4744 91 139 3.20.20.140
ID Description Score Start End GO Terms
AF-A0A536Z669-F1-model_v4 Cytochrome c 0.9577 37 193 GO:0009055
GO:0020037
GO:0046872
AF-A0A0A8RKU5-F1-model_v4 deleted 0.9575 3 293
AF-A0A1J5PHH8-F1-model_v4 Nicotinate dehydrogenase subunit B (EC 1.17.2.1) 0.9566 64 441 GO:0005506
GO:0005886
GO:0009055
GO:0016614
GO:0020037
AF-A0A2E2QPW9-F1-model_v4 Diheme cytochrome C-type 0.9563 47 226 GO:0009055
GO:0020037
GO:0046872
AF-A0A4V1UF08-F1-model_v4 C-type cytochrome 0.9552 1 185 GO:0009055
GO:0020037
GO:0046872

Feature Viewer

pLDDT pTM Quality
82.83 0.84 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map