F340467

General Info

Members Datasets Scaffolds Average Seq Length
227 158 454 478

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2747842501|2748017255
Length 529
Sequence MRTQMFGLIAMTLPLAACAQQTAPAPAAKASAPIAANRSTTPAPQLVAGLPDFTNLVEQVGPGVVNIETTITRKDAMARSARGGRGGQGGMPGQGGMPDDEQMPEFFKRFFGPDFQMPGGPRQGPGQGGGDDDGGIAGKSMGSGFIISADGYVLTNHHVVDGASEVTVKLTDRREFKAKVVGSDEQFDVALLKIEAKGLPTVRLGDSNTLKPGQWVVAIGSPFGLDHSVTAGIVSATGRSNPYADQRYVPFIQTDVAINQGNSGGPLLNTRGEVVGINSQIFSASGGYMGISFAIPIDLAFSAAEQIKATGRVSRGMLGVQVGAIDSLKAQGLGLPDSRGALVNDIPAGSPAAKAGVEVGDVIRAVNGKPIEVASDLPPMIGLMPPGAKVNLDILRDGKPRQVSVVLAPLQDGSEDAAPRTAAADAKPEAPASVALLGLQVADLTAAERSRLGLEAGEGVRIAAVTGVAARSTQPPLSPGLLIARVGRTKVGSVAELNRALSSYKKGDVVMLLVTDGKATSYVALKAGG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
6 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
7 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
8 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
9 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
10 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
11 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
12 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
15 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
16 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
20 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
21 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
22 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
23 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
24 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
33 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
34 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
35 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
36 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
37 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
38 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
39 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
40 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
42 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
44 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
46 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
48 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
50 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
61 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
62 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
63 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
64 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
65 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
66 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
67 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
68 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
73 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
74 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
75 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
76 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
77 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
80 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
81 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
82 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
83 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
84 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
85 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
86 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
87 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
88 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
91 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
92 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
93 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
94 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
95 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
96 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
97 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
98 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
99 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
100 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
110 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
115 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
116 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
117 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
118 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
119 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
120 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
121 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
122 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
123 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
124 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
125 2818991457 Xanthomonas translucens 569 Isolate Unclassified
126 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
127 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
128 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
129 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
130 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
131 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
132 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
133 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
134 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
135 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
136 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
137 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
138 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
139 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
140 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
141 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
142 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
143 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
144 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
145 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
146 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
147 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
148 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
149 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
150 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
151 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
152 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
153 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
154 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
155 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
156 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
157 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
158 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.94
Metatranscriptomes 0
Isolates 18.06

Biome Distribution

Category Percentage (%)
Aerial Root 0.44
Bulb 0
Endosphere 18.06
Nodule 0.44
Rhizoplane 1.76
Rhizosphere 48.46
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_341226 2162886007 Bacteria 1868
2 JGI25152J39213_1000018 3300002773 Bacteria 109715
3 JGI25151J46595_10000111 3300003187 Bacteria 111802
4 JGI25153J46596_10000085 3300003215 Bacteria 111802
5 Ga0055526_1001785 3300003771 Bacteria 14939
6 Ga0055537_1000306 3300003773 Bacteria 33928
7 Ga0055536_1004392 3300003781 Bacteria 7232
8 Ga0055536_1011905 3300003781 Bacteria 3280
9 Ga0055536_1011920 3300003781 Bacteria 3277
10 Ga0055534_1000388 3300003784 Bacteria 27515
11 Ga0055528_1001434 3300003790 Bacteria 14584
12 Ga0055530_10013515 3300003791 Bacteria 2782
13 Ga0055530_10013701 3300003791 Bacteria 2749
14 Ga0055531_10004339 3300003794 Bacteria 8673
15 Ga0055531_10015927 3300003794 Bacteria 3277
16 Ga0058692_1000011 3300003856 Bacteria 321321
17 Ga0058692_1000024 3300003856 Bacteria 219702
18 Ga0065704_10111165 3300005289 Bacteria 1963
19 Ga0070666_10006175 3300005335 Bacteria 7369
20 Ga0070668_100043942 3300005347 Bacteria 3426
21 Ga0070669_100022958 3300005353 Bacteria 4463
22 Ga0070685_10000308 3300005466 Bacteria 30701
23 Ga0070665_100008106 3300005548 Bacteria 10634
24 Ga0070665_100124333 3300005548 Bacteria 2581
25 Ga0075365_10056570 3300006038 Bacteria 2608
26 Ga0075364_10000037 3300006051 Bacteria 47111
27 Ga0075364_10034231 3300006051 Bacteria 3276
28 Ga0075434_100046428 3300006871 Bacteria 4310
29 Ga0105251_10001213 3300009011 Bacteria 22282
30 Ga0105251_10004227 3300009011 Bacteria 9925
31 Ga0105244_10015737 3300009036 Bacteria 4330
32 Ga0105240_10001717 3300009093 Bacteria 36977
33 Ga0105243_10027110 3300009148 Bacteria 4388
34 Ga0105238_10048807 3300009551 Bacteria 4265
35 Ga0105028_100971 3300009993 Bacteria 3013
36 Ga0105239_10145279 3300010375 Bacteria 2645
37 Ga0157373_10077462 3300013100 Bacteria 2346
38 Ga0157371_10000588 3300013102 Bacteria 43132
39 Ga0157371_10042706 3300013102 Bacteria 3232
40 Ga0157370_10054606 3300013104 Bacteria 3808
41 Ga0163162_10000016 3300013306 Bacteria 250836
42 Ga0182008_10000509 3300014497 Bacteria 29220
43 Ga0182008_10019541 3300014497 Bacteria 3496
44 Ga0182006_1014793 3300015261 Bacteria 3356
45 Ga0182007_10000191 3300015262 Bacteria 41295
46 Ga0182005_1005813 3300015265 Bacteria 3826
47 Ga0163161_10001189 3300017792 Bacteria 19555
48 Ga0163161_10043733 3300017792 Bacteria 3226
49 Ga0207425_1000028 3300025245 Bacteria 286333
50 Ga0209129_1000065 3300025258 Bacteria 232568
51 Ga0209565_1000023 3300025263 Bacteria 388244
52 Ga0209673_1000866 3300025273 Bacteria 39283
53 Ga0209130_1017450 3300025284 Bacteria 1709
54 Ga0209675_1000048 3300025291 Bacteria 221457
55 Ga0209676_1000034 3300025292 Bacteria 460125
56 Ga0209676_1000091 3300025292 Bacteria 251328
57 Ga0209676_1000117 3300025292 Bacteria 203251
58 Ga0209025_1000002 3300025294 Bacteria 1393142
59 Ga0209564_1000106 3300025295 Bacteria 216131
60 Ga0209758_1000003 3300025297 Bacteria 1398533
61 Ga0209050_1000175 3300025298 Bacteria 146845
62 Ga0209050_1000206 3300025298 Bacteria 131913
63 Ga0209050_1017608 3300025298 Bacteria 2833
64 Ga0209256_1007787 3300025299 Bacteria 5168
65 Ga0209051_1001280 3300025303 Bacteria 22332
66 Ga0209257_1000062 3300025304 Bacteria 362413
67 Ga0209257_1000320 3300025304 Bacteria 100514
68 Ga0209257_1000492 3300025304 Bacteria 71085
69 Ga0209257_1000745 3300025304 Bacteria 49164
70 Ga0207713_1001220 3300025735 Bacteria 21475
71 Ga0207695_10000033 3300025913 Bacteria 507477
72 Ga0207694_10000487 3300025924 Bacteria 35975
73 Ga0207694_10019316 3300025924 Bacteria 5152
74 Ga0207709_10000841 3300025935 Bacteria 23530
75 Ga0207668_10012078 3300025972 Bacteria 5274
76 Ga0207683_10111398 3300026121 Bacteria 2451
77 Ga0209371_1000007 3300027312 Bacteria 1050654
78 Ga0209371_1000016 3300027312 Bacteria 646301
79 Ga0268266_10044831 3300028379 Bacteria 3781
80 Ga0265324_10000010 3300029957 Bacteria 252917
81 Ga0268256_1000008 3300030500 Bacteria 1050654
82 Ga0268256_1000015 3300030500 Bacteria 646300
83 Ga0307508_10006422 3300031616 Bacteria 11053
84 Ga0265314_10033500 3300031711 Bacteria 3766
85 Ga0316576_10015292 3300031727 Bacteria 5148
86 Ga0316578_10065491 3300031728 Bacteria 2145
87 Ga0316577_10075043 3300031733 Bacteria 1888
88 Ga0307413_10014684 3300031824 Bacteria 3988
89 Ga0307412_10039576 3300031911 Bacteria 3045
90 Ga0307414_10018104 3300032004 Bacteria 4326
91 Ga0307414_10040298 3300032004 Bacteria 3153
92 Ga0307414_10107708 3300032004 Bacteria 2112
93 Ga0316574_0023479 3300035398 Bacteria 3681
94 Ga0316574_0038497 3300035398 Bacteria 2936
95 Ga0395905_0117142 3300037471 Bacteria 2503
96 Ga0439436_0010736 3300041404 Bacteria 2791
97 Ga0439465_0000408 3300041413 Bacteria 12500
98 Ga0439431_0002243 3300041997 Bacteria 4263
99 Ga0439445_0001846 3300042004 Bacteria 4657
100 Ga0439445_0027315 3300042004 Bacteria 1465
101 Ga0439449_0000369 3300042007 Bacteria 16554
102 Ga0439449_0014265 3300042007 Bacteria 2987
103 Ga0439449_0025351 3300042007 Bacteria 2217
104 Ga0466970_0025875 3300044765 Bacteria 3074
105 Ga0495638_0004358 3300046460 Bacteria 10718
106 Ga0495643_0011587 3300046522 Bacteria 5361
107 Ga0495663_0006515 3300046525 Bacteria 3223
108 Ga0495633_0009816 3300046558 Bacteria 5260
109 Ga0495633_0009822 3300046558 Bacteria 5258
110 Ga0495625_0051821 3300046660 Bacteria 2940
111 Ga0495625_0141809 3300046660 Bacteria 1620
112 Ga0495660_0050790 3300046810 Bacteria 2258
113 Ga0495672_0000704 3300047320 Bacteria 36769
114 Ga0495686_0052185 3300047472 Bacteria 2564
115 Ga0496104_0071542 3300048907 Bacteria 3298
116 Ga0496105_0019368 3300048908 Bacteria 5489
117 Ga0496106_0016812 3300048909 Bacteria 5412
118 Ga0496114_0024461 3300048917 Bacteria 4931
119 Ga0496116_0034459 3300048919 Bacteria 3571
120 Ga0496116_0034622 3300048919 Bacteria 3561
121 Ga0496116_0051815 3300048919 Bacteria 2723
122 Ga0496117_0002384 3300048920 Bacteria 23906
123 Ga0496117_0008191 3300048920 Bacteria 9973
124 Ga0496117_0033987 3300048920 Bacteria 3849
125 Ga0496117_0040790 3300048920 Bacteria 3409
126 Ga0496118_0001072 3300048921 Bacteria 42721
127 Ga0496118_0008467 3300048921 Bacteria 10626
128 Ga0496118_0016367 3300048921 Bacteria 6807
129 Ga0496118_0016618 3300048921 Bacteria 6742
130 Ga0496118_0029245 3300048921 Bacteria 4624
131 Ga0496118_0062003 3300048921 Bacteria 2764
132 Ga0496118_0089690 3300048921 Bacteria 2121
133 Ga0496119_0003019 3300048922 Bacteria 17817
134 Ga0496119_0010017 3300048922 Bacteria 8021
135 Ga0496119_0045988 3300048922 Bacteria 2730
136 Ga0496120_0002446 3300048923 Bacteria 18787
137 Ga0496120_0005492 3300048923 Bacteria 10089
138 Ga0496121_0050539 3300048924 Bacteria 3511
139 Ga0496121_0068730 3300048924 Bacteria 2864
140 Ga0496122_0000560 3300048925 Bacteria 76145
141 Ga0496122_0004663 3300048925 Bacteria 16836
142 Ga0496122_0004932 3300048925 Bacteria 16181
143 Ga0496122_0034128 3300048925 Bacteria 4170
144 Ga0496122_0062936 3300048925 Bacteria 2712
145 Ga0496123_0000647 3300048926 Bacteria 58089
146 Ga0496123_0004607 3300048926 Bacteria 14348
147 Ga0496123_0037323 3300048926 Bacteria 3431
148 Ga0496123_0047412 3300048926 Bacteria 2903
149 Ga0496123_0052869 3300048926 Bacteria 2689
150 Ga0496123_0077304 3300048926 Bacteria 2044
151 Ga0496124_0000018 3300048927 Bacteria 442940
152 Ga0496124_0004012 3300048927 Bacteria 17520
153 Ga0496124_0007400 3300048927 Bacteria 11678
154 Ga0496124_0072848 3300048927 Bacteria 2843
155 Ga0496124_0075017 3300048927 Bacteria 2794
156 Ga0496124_0091697 3300048927 Bacteria 2475
157 Ga0496124_0150856 3300048927 Bacteria 1823
158 Ga0496125_0008533 3300048928 Bacteria 10711
159 Ga0496125_0027877 3300048928 Bacteria 5111
160 Ga0496125_0035278 3300048928 Bacteria 4392
161 Ga0496125_0049703 3300048928 Bacteria 3480
162 Ga0496125_0060123 3300048928 Bacteria 3056
163 Ga0496125_0064072 3300048928 Bacteria 2925
164 Ga0496125_0073940 3300048928 Bacteria 2645
165 Ga0496126_0003166 3300048929 Bacteria 21193
166 Ga0496126_0060316 3300048929 Bacteria 3412
167 Ga0496126_0132810 3300048929 Bacteria 2149
168 Ga0501031_0006041 3300049568 Bacteria 7902
169 Ga0501032_0022442 3300049569 Bacteria 4374
170 Ga0501034_0000598 3300049571 Bacteria 56882
171 Ga0501034_0010186 3300049571 Bacteria 9807
172 Ga0501034_0032530 3300049571 Bacteria 5295
173 Ga0501036_0011924 3300049572 Bacteria 7205
174 Ga0501037_0002138 3300049573 Bacteria 14302
175 Ga0501038_0007136 3300049574 Bacteria 10323
176 Ga0501046_0000003 3300049580 Bacteria 496142
177 Ga0501047_0032159 3300049581 Bacteria 5063
178 Ga0501071_0079854 3300049587 Bacteria 2392
179 Ga0501225_0017708 3300049705 Bacteria 1977
180 Ga0501080_0002950 3300049742 Bacteria 14958
181 Ga0501035_0007542 3300049822 Bacteria 10167
182 Ga0501044_0010361 3300049823 Bacteria 10116
183 nmdc:mga00v17_103016_c1 3300050491 Bacteria 1804
184 nmdc:mga0yw44_9677_c1 3300050492 Bacteria 4892
185 nmdc:mga0n895_15453_c1 3300050512 Bacteria 6961
186 Ga0500634_0000054 3300053161 Bacteria 51788
187 2748017255 2747842501 Bacteria 5293829
188 2578457450 2576861471 Bacteria 4648976
189 2643908132 2643221579 Bacteria 4443405
190 2643915665 2643221581 Bacteria 3893603
191 2747950217 2747842428 Bacteria 4689383
192 2765580034 2765235840 Bacteria 4663337
193 2816518923 2816332141 Bacteria 4436036
194 2819660258 2818991457 Bacteria 5323295
195 2842395265 2842391507 Bacteria 4486072
196 2842759464 2842757796 Bacteria 3981385
197 2842781401 2842780639 Bacteria 4337790
198 2852649875 2852649853 Bacteria 4036942
199 2852684923 2852684882 Bacteria 5463342
200 2857444650 2857442823 Bacteria 4562550
201 2874222721 2874220319 Bacteria 4594709
202 2895502566 2895498888 Bacteria 5283788
203 2895514105 2895511927 Bacteria 6802080
204 2895524417 2895522137 Bacteria 3284416
205 2895526514 2895525241 Bacteria 3388457
206 2919093268 2919089067 Bacteria 4560942
207 2919130465 2919130084 Bacteria 5301837
208 2919138135 2919134579 Bacteria 4480386
209 2923518807 2923516293 Bacteria 3716336
210 2928500010 2928496128 Bacteria 4631123
211 2929198528 2929195423 Bacteria 5325372
212 2931383816 2931380184 Bacteria 4455911
213 2937613075 2937610967 Bacteria 4618818
214 2939591278 2939589442 Bacteria 4214238
215 2939625785 2939622612 Bacteria 4698046
216 2939628156 2939626828 Bacteria 4695272
217 2941476780 2941475908 Bacteria 4145589
218 2961049486 2961047084 Bacteria 4594415
219 2961066385 2961064222 Bacteria 4749990
220 2974308072 2974307012 Bacteria 4172388
221 2977248804 2977247770 Bacteria 4160543
222 2984516721 2984514374 Bacteria 4172479
223 2987608309 2987605356 Bacteria 4187822
224 8002872419 8002869464 Bacteria 3588529
225 8021624919 8021622325 Bacteria 4844743
226 8021629685 8021626552 Bacteria 4665214
227 8021651868 8021648035 Bacteria 4772378
228 SwRhRL2b_contig_341226
229 JGI25152J39213_1000018
230 JGI25151J46595_10000111
231 JGI25153J46596_10000085
232 Ga0055526_1001785
233 Ga0055537_1000306
234 Ga0055536_1004392
235 Ga0055536_1011905
236 Ga0055536_1011920
237 Ga0055534_1000388
238 Ga0055528_1001434
239 Ga0055530_10013515
240 Ga0055530_10013701
241 Ga0055531_10004339
242 Ga0055531_10015927
243 Ga0058692_1000011
244 Ga0058692_1000024
245 Ga0065704_10111165
246 Ga0070666_10006175
247 Ga0070668_100043942
248 Ga0070669_100022958
249 Ga0070685_10000308
250 Ga0070665_100008106
251 Ga0070665_100124333
252 Ga0075365_10056570
253 Ga0075364_10000037
254 Ga0075364_10034231
255 Ga0075434_100046428
256 Ga0105251_10001213
257 Ga0105251_10004227
258 Ga0105244_10015737
259 Ga0105240_10001717
260 Ga0105243_10027110
261 Ga0105238_10048807
262 Ga0105028_100971
263 Ga0105239_10145279
264 Ga0157373_10077462
265 Ga0157371_10000588
266 Ga0157371_10042706
267 Ga0157370_10054606
268 Ga0163162_10000016
269 Ga0182008_10000509
270 Ga0182008_10019541
271 Ga0182006_1014793
272 Ga0182007_10000191
273 Ga0182005_1005813
274 Ga0163161_10001189
275 Ga0163161_10043733
276 Ga0207425_1000028
277 Ga0209129_1000065
278 Ga0209565_1000023
279 Ga0209673_1000866
280 Ga0209130_1017450
281 Ga0209675_1000048
282 Ga0209676_1000034
283 Ga0209676_1000091
284 Ga0209676_1000117
285 Ga0209025_1000002
286 Ga0209564_1000106
287 Ga0209758_1000003
288 Ga0209050_1000175
289 Ga0209050_1000206
290 Ga0209050_1017608
291 Ga0209256_1007787
292 Ga0209051_1001280
293 Ga0209257_1000062
294 Ga0209257_1000320
295 Ga0209257_1000492
296 Ga0209257_1000745
297 Ga0207713_1001220
298 Ga0207695_10000033
299 Ga0207694_10000487
300 Ga0207694_10019316
301 Ga0207709_10000841
302 Ga0207668_10012078
303 Ga0207683_10111398
304 Ga0209371_1000007
305 Ga0209371_1000016
306 Ga0268266_10044831
307 Ga0265324_10000010
308 Ga0268256_1000008
309 Ga0268256_1000015
310 Ga0307508_10006422
311 Ga0265314_10033500
312 Ga0316576_10015292
313 Ga0316578_10065491
314 Ga0316577_10075043
315 Ga0307413_10014684
316 Ga0307412_10039576
317 Ga0307414_10018104
318 Ga0307414_10040298
319 Ga0307414_10107708
320 Ga0316574_0023479
321 Ga0316574_0038497
322 Ga0395905_0117142
323 Ga0439436_0010736
324 Ga0439465_0000408
325 Ga0439431_0002243
326 Ga0439445_0001846
327 Ga0439445_0027315
328 Ga0439449_0000369
329 Ga0439449_0014265
330 Ga0439449_0025351
331 Ga0466970_0025875
332 Ga0495638_0004358
333 Ga0495643_0011587
334 Ga0495663_0006515
335 Ga0495633_0009816
336 Ga0495633_0009822
337 Ga0495625_0051821
338 Ga0495625_0141809
339 Ga0495660_0050790
340 Ga0495672_0000704
341 Ga0495686_0052185
342 Ga0496104_0071542
343 Ga0496105_0019368
344 Ga0496106_0016812
345 Ga0496114_0024461
346 Ga0496116_0034459
347 Ga0496116_0034622
348 Ga0496116_0051815
349 Ga0496117_0002384
350 Ga0496117_0008191
351 Ga0496117_0033987
352 Ga0496117_0040790
353 Ga0496118_0001072
354 Ga0496118_0008467
355 Ga0496118_0016367
356 Ga0496118_0016618
357 Ga0496118_0029245
358 Ga0496118_0062003
359 Ga0496118_0089690
360 Ga0496119_0003019
361 Ga0496119_0010017
362 Ga0496119_0045988
363 Ga0496120_0002446
364 Ga0496120_0005492
365 Ga0496121_0050539
366 Ga0496121_0068730
367 Ga0496122_0000560
368 Ga0496122_0004663
369 Ga0496122_0004932
370 Ga0496122_0034128
371 Ga0496122_0062936
372 Ga0496123_0000647
373 Ga0496123_0004607
374 Ga0496123_0037323
375 Ga0496123_0047412
376 Ga0496123_0052869
377 Ga0496123_0077304
378 Ga0496124_0000018
379 Ga0496124_0004012
380 Ga0496124_0007400
381 Ga0496124_0072848
382 Ga0496124_0075017
383 Ga0496124_0091697
384 Ga0496124_0150856
385 Ga0496125_0008533
386 Ga0496125_0027877
387 Ga0496125_0035278
388 Ga0496125_0049703
389 Ga0496125_0060123
390 Ga0496125_0064072
391 Ga0496125_0073940
392 Ga0496126_0003166
393 Ga0496126_0060316
394 Ga0496126_0132810
395 Ga0501031_0006041
396 Ga0501032_0022442
397 Ga0501034_0000598
398 Ga0501034_0010186
399 Ga0501034_0032530
400 Ga0501036_0011924
401 Ga0501037_0002138
402 Ga0501038_0007136
403 Ga0501046_0000003
404 Ga0501047_0032159
405 Ga0501071_0079854
406 Ga0501225_0017708
407 Ga0501080_0002950
408 Ga0501035_0007542
409 Ga0501044_0010361
410 nmdc:mga00v17_103016_c1
411 nmdc:mga0yw44_9677_c1
412 nmdc:mga0n895_15453_c1
413 Ga0500634_0000054
414 2748017255
415 2578457450
416 2643908132
417 2643915665
418 2747950217
419 2765580034
420 2816518923
421 2819660258
422 2842395265
423 2842759464
424 2842781401
425 2852649875
426 2852684923
427 2857444650
428 2874222721
429 2895502566
430 2895514105
431 2895524417
432 2895526514
433 2919093268
434 2919130465
435 2919138135
436 2923518807
437 2928500010
438 2929198528
439 2931383816
440 2937613075
441 2939591278
442 2939625785
443 2939628156
444 2941476780
445 2961049486
446 2961066385
447 2974308072
448 2977248804
449 2984516721
450 2987608309
451 8002872419
452 8021624919
453 8021629685
454 8021651868

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13180

PDZ_2

PDZ domain

316

407

0.95

PF13365

Trypsin_2

Trypsin-like peptidase domain

142

277

0.95

PF17820

PDZ_6

PDZ domain

342

396

0.89

PF00595

PDZ

PDZ domain

306

395

0.88

PF00089

Trypsin

Trypsin

120

303

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
8auk-assembly1.cif.gz_E cryo-em structure of human birc6 in complex with htra2. 0.9279 57 273
7vge-assembly1.cif.gz_B structure of the pdz deleted variant of htra2 protease (s306a) 0.9264 57 273
7vge-assembly2.cif.gz_E structure of the pdz deleted variant of htra2 protease (s306a) 0.9186 57 273
3sti-assembly1.cif.gz_B crystal structure of the protease domain of degq from escherichia coli 0.9167 53 286
3nwu-assembly1.cif.gz_B substrate induced remodeling of the active site regulates htra1 activity 0.9113 57 273
ID Description Score Start End Superfamily
af_P0C0V0_287_387_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9443 290 389 2.30.42.10
2z9iA03 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9359 289 385 2.30.42.10
3pv2B02 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9302 286 385 2.30.42.10
3pv2B01 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.93 55 284 2.40.10.120
3gdvC03 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9267 290 388 2.30.42.10
ID Description Score Start End GO Terms
AF-A0A2P6W8M2-F1-model_v4 Trypsin 0.9782 57 218 GO:0004252
GO:0006508
AF-A0A1V5E998-F1-model_v4 Putative periplasmic serine endoprotease DegP-like (EC 3.4.21.107) 0.9687 289 387 GO:0004197
GO:0006508
GO:0030313
GO:0042597
AF-A0A531LWR1-F1-model_v4 PDZ domain-containing protein 0.953 286 386
AF-A0A519BU81-F1-model_v4 Trypsin 0.945 56 284 GO:0004252
GO:0006508
AF-A0A6L6CTJ0-F1-model_v4 PDZ domain-containing protein 0.9434 290 387

Map